jgi.p|Nanoce1779_2|596856, mRNA_6940 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596856
Unique NamemRNA_6940
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length472
Alignment locationscaffold_17:482986..483677 -

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Properties
Property NameValue
TranscriptId596942
TrackFilteredModels2
ProteinId596856
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:482986..483677 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596856gene_6940Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596856mRNA_6940-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6940CDS_6940Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6940 ID=mRNA_6940|Name=jgi.p|Nanoce1779_2|596856|organism=Nannochloropsis oceanica|type=mRNA|length=472bp
CAACAGCACAACAATGCCAGCAAACGCCACAGCCACCGATGTTTCCACGG
GAAACCCCAACCTGCCAATCAATGAAGAGCAGAAGCAGGTAGAGGAGCAG
CAAAGAGCCGCACGGGAGCAGCAAATCGCCATCCTCCAGCAGTTTGTGGA
CTCGGGTGGGAAGGACCGCCTCAAGGCCGTTCTGCGCGAGCGCCTGCAAG
GGGCTGGGTGGAAGGAAGAGGTAAAGGAGCTTTGCAAGGAAGTGATGCGG
AATAATTGCATCGAAGGCGTGACAGTAGACGAGCTAGTGGCCTTGACAAT
GCCAAGGGCAAGAGCAACAATACCGGACAACCTACGAGTAGAAGCGCTCA
AAGCCATTCGGGAATCCTTGCGGACTGATGTTGGATGAGCTGCCATGCCC
GTTAGAGAGAAACACACAAGCATTCAATTGTACAGCCAAAAGAAGAAGCA
AATGATGTATCGATATGACAAA
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protein sequence of jgi.p|Nanoce1779_2|596856

>mRNA_6940-protein ID=mRNA_6940-protein|Name=jgi.p|Nanoce1779_2|596856|organism=Nannochloropsis oceanica|type=polypeptide|length=125bp
MPANATATDVSTGNPNLPINEEQKQVEEQQRAAREQQIAILQQFVDSGGK
DRLKAVLRERLQGAGWKEEVKELCKEVMRNNCIEGVTVDELVALTMPRAR
ATIPDNLRVEALKAIRESLRTDVG*
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mRNA from alignment at scaffold_17:482986..483677-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6940 ID=mRNA_6940|Name=jgi.p|Nanoce1779_2|596856|organism=Nannochloropsis oceanica|type=mRNA|length=692bp|location=Sequence derived from alignment at scaffold_17:482986..483677- (Nannochloropsis oceanica)
CAACAGCACAACAATGCCAGCAAACGCCACAGCCACCGATGTTTCCACGG
GAAAGTAAGTATTTGTCTATCCAAATCCTGCATCGCATCCATCTCACTCC
CAACCCACCGCACTCATGCACGCCCCTAAACATGCACGCCACACAGCCCC
AACCTGCCAATCAATGAAGAGCAGAAGCAGGTAGAGGAGCAGCAAAGAGC
CGCACGGGAGCAGCAAATCGCCATCCTCCAGCAGTTTGTGGACTCGGGTG
GGAAGGACCGCCTCAAGGCCGTTCTGCGCGAGCGCCTGCAAGGGGCTGGG
TGGAAGGAAGAGGTAAAGGAGCTTTGCAAGGAAGTGATGCGGAATAATTG
CATCGAAGGCGTGACAGTAGACGAGCTAGTGGCCTTGACAATGCCAAGGG
CAAGAGGTACGAGAGGGGGGGAAGGGTGGTTGGCAAATATACGGAAATGG
AGGGGTGGTGGTTGGTACAGAAAGGTTGCGGATAGCATGCCTAATCTCAT
TTCTATTCATATCCGCACACTGACATAATCATAGCAACAATACCGGACAA
CCTACGAGTAGAAGCGCTCAAAGCCATTCGGGAATCCTTGCGGACTGATG
TTGGATGAGCTGCCATGCCCGTTAGAGAGAAACACACAAGCATTCAATTG
TACAGCCAAAAGAAGAAGCAAATGATGTATCGATATGACAAA
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Coding sequence (CDS) from alignment at scaffold_17:482986..483677-

>mRNA_6940 ID=mRNA_6940|Name=jgi.p|Nanoce1779_2|596856|organism=Nannochloropsis oceanica|type=CDS|length=1125bp|location=Sequence derived from alignment at scaffold_17:482986..483677- (Nannochloropsis oceanica)
CAACAATACCGGACAACCTACGAGTAGAAGCGCTCAAAGCCATTCGGGAA
TCCTTGCGGACTGATGTTGGATGACCCCAACCTGCCAATCAATGAAGAGC
AGAAGCAGGTAGAGGAGCAGCAAAGAGCCGCACGGGAGCAGCAAATCGCC
ATCCTCCAGCAGTTTGTGGACTCGGGTGGGAAGGACCGCCTCAAGGCCGT
TCTGCGCGAGCGCCTGCAAGGGGCTGGGTGGAAGGAAGAGGTAAAGGAGC
TTTGCAAGGAAGTGATGCGGAATAATTGCATCGAAGGCGTGACAGTAGAC
GAGCTAGTGGCCTTGACAATGCCAAGGGCAAGAGATGCCAGCAAACGCCA
CAGCCACCGATGTTTCCACGGGAAACAACAATACCGGACAACCTACGAGT
AGAAGCGCTCAAAGCCATTCGGGAATCCTTGCGGACTGATGTTGGATGAC
CCCAACCTGCCAATCAATGAAGAGCAGAAGCAGGTAGAGGAGCAGCAAAG
AGCCGCACGGGAGCAGCAAATCGCCATCCTCCAGCAGTTTGTGGACTCGG
GTGGGAAGGACCGCCTCAAGGCCGTTCTGCGCGAGCGCCTGCAAGGGGCT
GGGTGGAAGGAAGAGGTAAAGGAGCTTTGCAAGGAAGTGATGCGGAATAA
TTGCATCGAAGGCGTGACAGTAGACGAGCTAGTGGCCTTGACAATGCCAA
GGGCAAGAGATGCCAGCAAACGCCACAGCCACCGATGTTTCCACGGGAAA
CAACAATACCGGACAACCTACGAGTAGAAGCGCTCAAAGCCATTCGGGAA
TCCTTGCGGACTGATGTTGGATGACCCCAACCTGCCAATCAATGAAGAGC
AGAAGCAGGTAGAGGAGCAGCAAAGAGCCGCACGGGAGCAGCAAATCGCC
ATCCTCCAGCAGTTTGTGGACTCGGGTGGGAAGGACCGCCTCAAGGCCGT
TCTGCGCGAGCGCCTGCAAGGGGCTGGGTGGAAGGAAGAGGTAAAGGAGC
TTTGCAAGGAAGTGATGCGGAATAATTGCATCGAAGGCGTGACAGTAGAC
GAGCTAGTGGCCTTGACAATGCCAAGGGCAAGAGATGCCAGCAAACGCCA
CAGCCACCGATGTTTCCACGGGAAA
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Synonyms
Publications