jgi.p|Nanoce1779_2|139716, mRNA_694 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|139716
Unique NamemRNA_694
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length673
Alignment locationscaffold_2:208781..209453 +

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Properties
Property NameValue
TranscriptId139802
TrackFilteredModels2
ProteinId139716
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:208781..209453 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|139716gene_694Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|139716mRNA_694-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_694CDS_694Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_694 ID=mRNA_694|Name=jgi.p|Nanoce1779_2|139716|organism=Nannochloropsis oceanica|type=mRNA|length=673bp
GGTAAGCTGTGCCACCAGCGAAAAAAAGTGTATGGCGTGACCATCAAAAG
AAGACAAAAATTGGATGATGGGCCAGCCGTTGAGGGGCAGGACGTTTTGC
GTTATTAGAAAATTATCGATCGCGCAAAAGAAGGCAACACCGAATCGCGT
TGGTCCAGTCTTGATTCAACTGTCGTCACTGTGGGGTGTTTCTATCATTC
AAAGCGCTGCTTGGGCAGCATGCGCATGCACCTACCACCCGCGCCCACAT
GTTGCCGGCATATTTTGACGTTCGCGCTGGCAACGGATGTCACGTTTTCG
CATCGATTAATCCACAACCCGATTTTCTGCGAGGATGTAGATAAGCAACA
CCACGAATTTAAGACGCCTGTCGGTTTCGACTATGACGACTGGATTGGCT
GGGCTGCCGAACTACTGTGTCGCTTTGCGACAGAGCAAGGAGATCCGGTC
AATTTTCTTACAGTACTTGTTAGTGCAGAGGGTCTTCATATGGGGCATCA
TCTTTTGGCCCGCACCCCGCACTGCAGAAAGCGCTGGAAGATTCAACCGA
ATGCAGAACCTCCAAGGAACTAGTTTGGAGCCGGTCTCTGGTACCAAGGG
GAGGTCGAGGAGGCATGGAGGCAGAAAGGGCCCTGCGATGAATAGCGGAC
TCATTTTAGACCATGCAAATAAT
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protein sequence of jgi.p|Nanoce1779_2|139716

>mRNA_694-protein ID=mRNA_694-protein|Name=jgi.p|Nanoce1779_2|139716|organism=Nannochloropsis oceanica|type=polypeptide|length=118bp
MRMHLPPAPTCCRHILTFALATDVTFSHRLIHNPIFCEDVDKQHHEFKTP
VGFDYDDWIGWAAELLCRFATEQGDPVNFLTVLVSAEGLHMGHHLLARTP
HCRKRWKIQPNAEPPRN*
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mRNA from alignment at scaffold_2:208781..209453+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_694 ID=mRNA_694|Name=jgi.p|Nanoce1779_2|139716|organism=Nannochloropsis oceanica|type=mRNA|length=673bp|location=Sequence derived from alignment at scaffold_2:208781..209453+ (Nannochloropsis oceanica)
GGTAAGCTGTGCCACCAGCGAAAAAAAGTGTATGGCGTGACCATCAAAAG
AAGACAAAAATTGGATGATGGGCCAGCCGTTGAGGGGCAGGACGTTTTGC
GTTATTAGAAAATTATCGATCGCGCAAAAGAAGGCAACACCGAATCGCGT
TGGTCCAGTCTTGATTCAACTGTCGTCACTGTGGGGTGTTTCTATCATTC
AAAGCGCTGCTTGGGCAGCATGCGCATGCACCTACCACCCGCGCCCACAT
GTTGCCGGCATATTTTGACGTTCGCGCTGGCAACGGATGTCACGTTTTCG
CATCGATTAATCCACAACCCGATTTTCTGCGAGGATGTAGATAAGCAACA
CCACGAATTTAAGACGCCTGTCGGTTTCGACTATGACGACTGGATTGGCT
GGGCTGCCGAACTACTGTGTCGCTTTGCGACAGAGCAAGGAGATCCGGTC
AATTTTCTTACAGTACTTGTTAGTGCAGAGGGTCTTCATATGGGGCATCA
TCTTTTGGCCCGCACCCCGCACTGCAGAAAGCGCTGGAAGATTCAACCGA
ATGCAGAACCTCCAAGGAACTAGTTTGGAGCCGGTCTCTGGTACCAAGGG
GAGGTCGAGGAGGCATGGAGGCAGAAAGGGCCCTGCGATGAATAGCGGAC
TCATTTTAGACCATGCAAATAAT
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Coding sequence (CDS) from alignment at scaffold_2:208781..209453+

>mRNA_694 ID=mRNA_694|Name=jgi.p|Nanoce1779_2|139716|organism=Nannochloropsis oceanica|type=CDS|length=354bp|location=Sequence derived from alignment at scaffold_2:208781..209453+ (Nannochloropsis oceanica)
ATGCGCATGCACCTACCACCCGCGCCCACATGTTGCCGGCATATTTTGAC
GTTCGCGCTGGCAACGGATGTCACGTTTTCGCATCGATTAATCCACAACC
CGATTTTCTGCGAGGATGTAGATAAGCAACACCACGAATTTAAGACGCCT
GTCGGTTTCGACTATGACGACTGGATTGGCTGGGCTGCCGAACTACTGTG
TCGCTTTGCGACAGAGCAAGGAGATCCGGTCAATTTTCTTACAGTACTTG
TTAGTGCAGAGGGTCTTCATATGGGGCATCATCTTTTGGCCCGCACCCCG
CACTGCAGAAAGCGCTGGAAGATTCAACCGAATGCAGAACCTCCAAGGAA
CTAG
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Synonyms
Publications