Properties
| Property Name | Value |
|---|
| TranscriptId | 544659 |
| Track | FilteredModels2 |
| ProteinId | 544573 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_17 | supercontig | scaffold_17:479847..481529 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6939 ID=mRNA_6939|Name=jgi.p|Nanoce1779_2|544573|organism=Nannochloropsis oceanica|type=mRNA|length=1425bp
ACAGACATACAAACTTAATAAGCTGAAGCTAGACAAGACAAGTTACATGC
CTAACAAAGCCAGCAACAAGAAAAAAACTCTCATCCCGGTTACGGTGCTC
ACGGGCTTCTTGGGGAGCGGTAAAACGACCCTGCTAAATCACATTATGAC
GGCGCAGCATGGGAAGCGTATCGCTGTCATTGAGAATGAGTTTGGGGAGG
TGGGCGTCGACGACTCCCTTGTGAAGCGCAAGGATTTCGGAACAGAGGAC
ATTGTGGAGATGAACAATGGCTGCATTTGCTGCACTGTCCGCGGGGACCT
GATCCGCATCCTCACGGACCTCTTCAAGCGCAAAGCCGGAAAGTTTGACC
ATATCCTCATCGAGACGACGGGGTTGGCCGACCCAGCTCCGGTCGCCCAA
ACATTCTTTGTGCATGATGAGCTTCAGTCCAAATTGCGCCTGGATGCTAT
TCTCACGGTGGTGGACTCCAAGCATCTTATCCAGCACCTCGATGACCCTC
GTCCGGAAGGCGTGGAAAACGAGGCAGTGGAGCAGCTCGCCTTTGCTGAT
CGAGTCCTCCTCAATAAGATTGATCTCGCCACAGACGCCGAGCTGATGGA
GGTCGAAAAGCGCATCAAAGCTGTCAACAACTTTGCGCCTATCATACGCA
CCCAAAATGCTGTGGTCAACCTAGACAAAGTCCTGGACCTCAAAGCATTT
GACCTGAAGCGGGTCTTAGACTTCGACCCGGAGTTCCTCGGGGATCAGGA
GCATGAACATGACCAGAGCGTCACCTCGGTAGGCTTCAGACTGGCCGGAG
ACATGAATTTGGGACAACTTGAACGTTGGCTGTCCGTCCTCCTCCGCGAT
AAGGGCACGGAACTCTTCCGCTACAAGGGCGTTCTGTCCGTTAAGGGCTT
CGATGCGCCCTGGATTTTCCAAGGGGTCCATATGCTCTTTGGTGCCTCCA
TGGACGATCAAGAGTGGAAGTGCGTCCAGGATCGGACGAACCGTTTTGTC
TTCATTGGCCGCAACCTGAACCGCACCGAGCTCACCGAGGGTTTTGCGGC
ATGTCTTGTCACCAAGCCCCTGCGCTTTGAGGTTGGGACTCGGGTCCGCT
GCCACGTGGATGAGAATCAATGGGAGCTGGGCGAGGTGATCAAGCAGTGG
AACGACGGTAACCCCTACCGGGTCCGACTCCACAACGGGATAGAGATCTG
GGCTCCTATTGATAACGATGGAGCCATCCGCCTCGCGTGTCGTGCGGAGA
CTCGCATGAATAAGTGAGGTCTATTGAATTTGAGATCGACGGATGTAGAC
GCTATTTCCGTATTTTGTCATACGATTGTGCTTTTTGATGGTCATCAAAC
GGGATGATCGAGACATAAATCTTCAGAGTTCTATAAGTATATTGGAAGAT
ACAAAGTGTAGCCCCCAAAATACGC back to topprotein sequence of jgi.p|Nanoce1779_2|544573 >mRNA_6939-protein ID=mRNA_6939-protein|Name=jgi.p|Nanoce1779_2|544573|organism=Nannochloropsis oceanica|type=polypeptide|length=407bp
MPNKASNKKKTLIPVTVLTGFLGSGKTTLLNHIMTAQHGKRIAVIENEFG
EVGVDDSLVKRKDFGTEDIVEMNNGCICCTVRGDLIRILTDLFKRKAGKF
DHILIETTGLADPAPVAQTFFVHDELQSKLRLDAILTVVDSKHLIQHLDD
PRPEGVENEAVEQLAFADRVLLNKIDLATDAELMEVEKRIKAVNNFAPII
RTQNAVVNLDKVLDLKAFDLKRVLDFDPEFLGDQEHEHDQSVTSVGFRLA
GDMNLGQLERWLSVLLRDKGTELFRYKGVLSVKGFDAPWIFQGVHMLFGA
SMDDQEWKCVQDRTNRFVFIGRNLNRTELTEGFAACLVTKPLRFEVGTRV
RCHVDENQWELGEVIKQWNDGNPYRVRLHNGIEIWAPIDNDGAIRLACRA
ETRMNK* back to topmRNA from alignment at scaffold_17:479847..481529- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6939 ID=mRNA_6939|Name=jgi.p|Nanoce1779_2|544573|organism=Nannochloropsis oceanica|type=mRNA|length=1683bp|location=Sequence derived from alignment at scaffold_17:479847..481529- (Nannochloropsis oceanica)
ACAGACATACAAACTTAATAAGCTGAAGCTAGACAAGACAAGTTACATGC
CTAACAAAGCCAGCAACAAGAAAAAAACTCTCATCCCGGTTACGGTGCTC
ACGGGCTTCTTGGGGAGCGGTAAAACGGTAGGTGTCAGTATATACGCCGA
CTGGCAACTTGCCTTTCTCTGTACTTATGATGAATATCATACGCATGATC
AATAGACCCTGCTAAATCACATTATGACGGCGCAGCATGGGAAGCGTATC
GCTGTCATTGAGAATGAGTTTGGGGAGGTGGGCGTCGACGACTCCCTTGT
GAAGCGCAAGGATTTCGGAACAGAGGACATTGTGGAGATGAACAATGGCT
GTAAGTTATTACGTCAATTCATCCCCAAAAAAGCCACTCGTTCACTTTAC
CTGTCTCACCAAACCCCACCAGGCATTTGCTGCACTGTCCGCGGGGACCT
GATCCGCATCCTCACGGACCTCTTCAAGCGCAAAGCCGGAAAGTTTGACC
ATATCCTCATCGAGACGACGGGGTTGGCCGACCCAGCTCCGGTCGCCCAA
ACATTCTTTGTGCATGATGAGCTTCAGGTATGTAGGCTAGTCGGCTTTTC
CGAGTCCGGCATTCCTGTCTGCATCCGCCCATAGCACGCACAAAATCGTT
TCCCCCCCTCCGTTCCCCCGTAATGTGTTACACAGTCCAAATTGCGCCTG
GATGCTATTCTCACGGTGGTGGACTCCAAGCATCTTATCCAGCACCTCGA
TGACCCTCGTCCGGAAGGCGTGGAAAACGAGGCAGTGGAGCAGCTCGCCT
TTGCTGATCGAGTCCTCCTCAATAAGATTGATCTCGCCACAGACGCCGAG
CTGATGGAGGTCGAAAAGCGCATCAAAGCTGTCAACAACTTTGCGCCTAT
CATACGCACCCAAAATGCTGTGGTCAACCTAGACAAAGTCCTGGACCTCA
AAGCATTTGACCTGAAGCGGGTCTTAGACTTCGACCCGGAGTTCCTCGGG
GATCAGGAGCATGAACATGACCAGAGCGTCACCTCGGTAGGCTTCAGACT
GGCCGGAGACATGAATTTGGGACAACTTGAACGTTGGCTGTCCGTCCTCC
TCCGCGATAAGGGCACGGAACTCTTCCGCTACAAGGGCGTTCTGTCCGTT
AAGGGCTTCGATGCGCCCTGGATTTTCCAAGGGGTCCATATGCTCTTTGG
TGCCTCCATGGACGATCAAGAGTGGAAGTGCGTCCAGGATCGGACGAACC
GTTTTGTCTTCATTGGCCGCAACCTGAACCGCACCGAGCTCACCGAGGGT
TTTGCGGCATGTCTTGTCACCAAGCCCCTGCGCTTTGAGGTTGGGACTCG
GGTCCGCTGCCACGTGGATGAGAATCAATGGGAGCTGGGCGAGGTGATCA
AGCAGTGGAACGACGGTAACCCCTACCGGGTCCGACTCCACAACGGGATA
GAGATCTGGGCTCCTATTGATAACGATGGAGCCATCCGCCTCGCGTGTCG
TGCGGAGACTCGCATGAATAAGTGAGGTCTATTGAATTTGAGATCGACGG
ATGTAGACGCTATTTCCGTATTTTGTCATACGATTGTGCTTTTTGATGGT
CATCAAACGGGATGATCGAGACATAAATCTTCAGAGTTCTATAAGTATAT
TGGAAGATACAAAGTGTAGCCCCCAAAATACGC back to topCoding sequence (CDS) from alignment at scaffold_17:479847..481529- >mRNA_6939 ID=mRNA_6939|Name=jgi.p|Nanoce1779_2|544573|organism=Nannochloropsis oceanica|type=CDS|length=4884bp|location=Sequence derived from alignment at scaffold_17:479847..481529- (Nannochloropsis oceanica)
TCCAAATTGCGCCTGGATGCTATTCTCACGGTGGTGGACTCCAAGCATCT
TATCCAGCACCTCGATGACCCTCGTCCGGAAGGCGTGGAAAACGAGGCAG
TGGAGCAGCTCGCCTTTGCTGATCGAGTCCTCCTCAATAAGATTGATCTC
GCCACAGACGCCGAGCTGATGGAGGTCGAAAAGCGCATCAAAGCTGTCAA
CAACTTTGCGCCTATCATACGCACCCAAAATGCTGTGGTCAACCTAGACA
AAGTCCTGGACCTCAAAGCATTTGACCTGAAGCGGGTCTTAGACTTCGAC
CCGGAGTTCCTCGGGGATCAGGAGCATGAACATGACCAGAGCGTCACCTC
GGTAGGCTTCAGACTGGCCGGAGACATGAATTTGGGACAACTTGAACGTT
GGCTGTCCGTCCTCCTCCGCGATAAGGGCACGGAACTCTTCCGCTACAAG
GGCGTTCTGTCCGTTAAGGGCTTCGATGCGCCCTGGATTTTCCAAGGGGT
CCATATGCTCTTTGGTGCCTCCATGGACGATCAAGAGTGGAAGTGCGTCC
AGGATCGGACGAACCGTTTTGTCTTCATTGGCCGCAACCTGAACCGCACC
GAGCTCACCGAGGGTTTTGCGGCATGTCTTGTCACCAAGCCCCTGCGCTT
TGAGGTTGGGACTCGGGTCCGCTGCCACGTGGATGAGAATCAATGGGAGC
TGGGCGAGGTGATCAAGCAGTGGAACGACGGTAACCCCTACCGGGTCCGA
CTCCACAACGGGATAGAGATCTGGGCTCCTATTGATAACGATGGAGCCAT
CCGCCTCGCGTGTCGTGCGGAGACTCGCATGAATAAGTGAGCATTTGCTG
CACTGTCCGCGGGGACCTGATCCGCATCCTCACGGACCTCTTCAAGCGCA
AAGCCGGAAAGTTTGACCATATCCTCATCGAGACGACGGGGTTGGCCGAC
CCAGCTCCGGTCGCCCAAACATTCTTTGTGCATGATGAGCTTCAGACCCT
GCTAAATCACATTATGACGGCGCAGCATGGGAAGCGTATCGCTGTCATTG
AGAATGAGTTTGGGGAGGTGGGCGTCGACGACTCCCTTGTGAAGCGCAAG
GATTTCGGAACAGAGGACATTGTGGAGATGAACAATGGCTATGCCTAACA
AAGCCAGCAACAAGAAAAAAACTCTCATCCCGGTTACGGTGCTCACGGGC
TTCTTGGGGAGCGGTAAAACGTCCAAATTGCGCCTGGATGCTATTCTCAC
GGTGGTGGACTCCAAGCATCTTATCCAGCACCTCGATGACCCTCGTCCGG
AAGGCGTGGAAAACGAGGCAGTGGAGCAGCTCGCCTTTGCTGATCGAGTC
CTCCTCAATAAGATTGATCTCGCCACAGACGCCGAGCTGATGGAGGTCGA
AAAGCGCATCAAAGCTGTCAACAACTTTGCGCCTATCATACGCACCCAAA
ATGCTGTGGTCAACCTAGACAAAGTCCTGGACCTCAAAGCATTTGACCTG
AAGCGGGTCTTAGACTTCGACCCGGAGTTCCTCGGGGATCAGGAGCATGA
ACATGACCAGAGCGTCACCTCGGTAGGCTTCAGACTGGCCGGAGACATGA
ATTTGGGACAACTTGAACGTTGGCTGTCCGTCCTCCTCCGCGATAAGGGC
ACGGAACTCTTCCGCTACAAGGGCGTTCTGTCCGTTAAGGGCTTCGATGC
GCCCTGGATTTTCCAAGGGGTCCATATGCTCTTTGGTGCCTCCATGGACG
ATCAAGAGTGGAAGTGCGTCCAGGATCGGACGAACCGTTTTGTCTTCATT
GGCCGCAACCTGAACCGCACCGAGCTCACCGAGGGTTTTGCGGCATGTCT
TGTCACCAAGCCCCTGCGCTTTGAGGTTGGGACTCGGGTCCGCTGCCACG
TGGATGAGAATCAATGGGAGCTGGGCGAGGTGATCAAGCAGTGGAACGAC
GGTAACCCCTACCGGGTCCGACTCCACAACGGGATAGAGATCTGGGCTCC
TATTGATAACGATGGAGCCATCCGCCTCGCGTGTCGTGCGGAGACTCGCA
TGAATAAGTGAGCATTTGCTGCACTGTCCGCGGGGACCTGATCCGCATCC
TCACGGACCTCTTCAAGCGCAAAGCCGGAAAGTTTGACCATATCCTCATC
GAGACGACGGGGTTGGCCGACCCAGCTCCGGTCGCCCAAACATTCTTTGT
GCATGATGAGCTTCAGACCCTGCTAAATCACATTATGACGGCGCAGCATG
GGAAGCGTATCGCTGTCATTGAGAATGAGTTTGGGGAGGTGGGCGTCGAC
GACTCCCTTGTGAAGCGCAAGGATTTCGGAACAGAGGACATTGTGGAGAT
GAACAATGGCTATGCCTAACAAAGCCAGCAACAAGAAAAAAACTCTCATC
CCGGTTACGGTGCTCACGGGCTTCTTGGGGAGCGGTAAAACGTCCAAATT
GCGCCTGGATGCTATTCTCACGGTGGTGGACTCCAAGCATCTTATCCAGC
ACCTCGATGACCCTCGTCCGGAAGGCGTGGAAAACGAGGCAGTGGAGCAG
CTCGCCTTTGCTGATCGAGTCCTCCTCAATAAGATTGATCTCGCCACAGA
CGCCGAGCTGATGGAGGTCGAAAAGCGCATCAAAGCTGTCAACAACTTTG
CGCCTATCATACGCACCCAAAATGCTGTGGTCAACCTAGACAAAGTCCTG
GACCTCAAAGCATTTGACCTGAAGCGGGTCTTAGACTTCGACCCGGAGTT
CCTCGGGGATCAGGAGCATGAACATGACCAGAGCGTCACCTCGGTAGGCT
TCAGACTGGCCGGAGACATGAATTTGGGACAACTTGAACGTTGGCTGTCC
GTCCTCCTCCGCGATAAGGGCACGGAACTCTTCCGCTACAAGGGCGTTCT
GTCCGTTAAGGGCTTCGATGCGCCCTGGATTTTCCAAGGGGTCCATATGC
TCTTTGGTGCCTCCATGGACGATCAAGAGTGGAAGTGCGTCCAGGATCGG
ACGAACCGTTTTGTCTTCATTGGCCGCAACCTGAACCGCACCGAGCTCAC
CGAGGGTTTTGCGGCATGTCTTGTCACCAAGCCCCTGCGCTTTGAGGTTG
GGACTCGGGTCCGCTGCCACGTGGATGAGAATCAATGGGAGCTGGGCGAG
GTGATCAAGCAGTGGAACGACGGTAACCCCTACCGGGTCCGACTCCACAA
CGGGATAGAGATCTGGGCTCCTATTGATAACGATGGAGCCATCCGCCTCG
CGTGTCGTGCGGAGACTCGCATGAATAAGTGAGCATTTGCTGCACTGTCC
GCGGGGACCTGATCCGCATCCTCACGGACCTCTTCAAGCGCAAAGCCGGA
AAGTTTGACCATATCCTCATCGAGACGACGGGGTTGGCCGACCCAGCTCC
GGTCGCCCAAACATTCTTTGTGCATGATGAGCTTCAGACCCTGCTAAATC
ACATTATGACGGCGCAGCATGGGAAGCGTATCGCTGTCATTGAGAATGAG
TTTGGGGAGGTGGGCGTCGACGACTCCCTTGTGAAGCGCAAGGATTTCGG
AACAGAGGACATTGTGGAGATGAACAATGGCTATGCCTAACAAAGCCAGC
AACAAGAAAAAAACTCTCATCCCGGTTACGGTGCTCACGGGCTTCTTGGG
GAGCGGTAAAACGTCCAAATTGCGCCTGGATGCTATTCTCACGGTGGTGG
ACTCCAAGCATCTTATCCAGCACCTCGATGACCCTCGTCCGGAAGGCGTG
GAAAACGAGGCAGTGGAGCAGCTCGCCTTTGCTGATCGAGTCCTCCTCAA
TAAGATTGATCTCGCCACAGACGCCGAGCTGATGGAGGTCGAAAAGCGCA
TCAAAGCTGTCAACAACTTTGCGCCTATCATACGCACCCAAAATGCTGTG
GTCAACCTAGACAAAGTCCTGGACCTCAAAGCATTTGACCTGAAGCGGGT
CTTAGACTTCGACCCGGAGTTCCTCGGGGATCAGGAGCATGAACATGACC
AGAGCGTCACCTCGGTAGGCTTCAGACTGGCCGGAGACATGAATTTGGGA
CAACTTGAACGTTGGCTGTCCGTCCTCCTCCGCGATAAGGGCACGGAACT
CTTCCGCTACAAGGGCGTTCTGTCCGTTAAGGGCTTCGATGCGCCCTGGA
TTTTCCAAGGGGTCCATATGCTCTTTGGTGCCTCCATGGACGATCAAGAG
TGGAAGTGCGTCCAGGATCGGACGAACCGTTTTGTCTTCATTGGCCGCAA
CCTGAACCGCACCGAGCTCACCGAGGGTTTTGCGGCATGTCTTGTCACCA
AGCCCCTGCGCTTTGAGGTTGGGACTCGGGTCCGCTGCCACGTGGATGAG
AATCAATGGGAGCTGGGCGAGGTGATCAAGCAGTGGAACGACGGTAACCC
CTACCGGGTCCGACTCCACAACGGGATAGAGATCTGGGCTCCTATTGATA
ACGATGGAGCCATCCGCCTCGCGTGTCGTGCGGAGACTCGCATGAATAAG
TGAGCATTTGCTGCACTGTCCGCGGGGACCTGATCCGCATCCTCACGGAC
CTCTTCAAGCGCAAAGCCGGAAAGTTTGACCATATCCTCATCGAGACGAC
GGGGTTGGCCGACCCAGCTCCGGTCGCCCAAACATTCTTTGTGCATGATG
AGCTTCAGACCCTGCTAAATCACATTATGACGGCGCAGCATGGGAAGCGT
ATCGCTGTCATTGAGAATGAGTTTGGGGAGGTGGGCGTCGACGACTCCCT
TGTGAAGCGCAAGGATTTCGGAACAGAGGACATTGTGGAGATGAACAATG
GCTATGCCTAACAAAGCCAGCAACAAGAAAAAAACTCTCATCCCGGTTAC
GGTGCTCACGGGCTTCTTGGGGAGCGGTAAAACG back to top
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