jgi.p|Nanoce1779_2|596850, mRNA_6938 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596850
Unique NamemRNA_6938
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length590
Alignment locationscaffold_17:477007..477963 -

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Properties
Property NameValue
TranscriptId596936
TrackFilteredModels2
ProteinId596850
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:477007..477963 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596850gene_6938Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596850mRNA_6938-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6938CDS_6938Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6938 ID=mRNA_6938|Name=jgi.p|Nanoce1779_2|596850|organism=Nannochloropsis oceanica|type=mRNA|length=590bp
CTGCTGCAGCTGCAGCGGCTGCGGCTGCTGCGGCTGCTGCGGCTGCTGAC
AAAGGTATTATGCTCCCGTCCACGTCTTCTTCATTTTGGCACCGGGAGGG
TGTTGGTAGTGAAGGAAGGAAGGAGAGAGGGAGGGAGGCAGGGGAGGAAG
GATTGGGTTTGAGGAGGCTGATGGAGCAGCTGGCAAAGGGATTCCGGCAG
TGGCGGGATGGGGCCAGCCATTATCACCACCAGCATCATCCTCCTCCTCA
TCATCAGCAGCAGCACCGGCATCAGCAGCAGCAAAATATAGCGAGTCGCA
GTGTTGCTGGAAAGGGCGGGGAAGAGAAGGGGGAGGAATGGGCCGAGGAT
CACGACGGCGAGCAGGAGCAGCGACGATTGCAACAGCAGCAGCAGCAGCA
GCATTATCGTTTGGGCCGCAAATTTGAGGGGGGGGGACATGGAGAAATCT
GGCGAGCCTACTTGGTGGTGGAAGACGAGGGGGGGGGTTACAGGCTATCA
CCAGAGAGCCCTCGGCCTTCTGGCGGCACCTCCGTCTCAGCCCTGGAGGC
GACGATGTCCTCAAAGGCCTCTTACGTCAAATTTTAGAGG
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protein sequence of jgi.p|Nanoce1779_2|596850

>mRNA_6938-protein ID=mRNA_6938-protein|Name=jgi.p|Nanoce1779_2|596850|organism=Nannochloropsis oceanica|type=polypeptide|length=176bp
MLPSTSSSFWHREGVGSEGRKERGREAGEEGLGLRRLMEQLAKGFRQWRD
GASHYHHQHHPPPHHQQQHRHQQQQNIASRSVAGKGGEEKGEEWAEDHDG
EQEQRRLQQQQQQQHYRLGRKFEGGGHGEIWRAYLVVEDEGGGYRLSPES
PRPSGGTSVSALEATMSSKASYVKF*
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mRNA from alignment at scaffold_17:477007..477963-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6938 ID=mRNA_6938|Name=jgi.p|Nanoce1779_2|596850|organism=Nannochloropsis oceanica|type=mRNA|length=957bp|location=Sequence derived from alignment at scaffold_17:477007..477963- (Nannochloropsis oceanica)
CTGCTGCAGCTGCAGCGGCTGCGGCTGCTGCGGCTGCTGCGGCTGCTGAC
AAAGGTATTATGCTCCCGTCCACGTCTTCTTCATTTTGGCACCGGGAGGG
TGTTGGTAGTGAAGGAAGGAAGGAGAGAGGGAGGGAGGCAGGGGAGGAAG
GATTGGGTTTGAGGAGGCTGATGGAGCAGCTGGCAAAGGGATTCCGGCAG
TGGCGGGATGGGGCCAGCCATTATCACCACCAGCATCATCCTCCTCCTCA
TCATCAGCAGCAGCACCGGCATCAGCAGCAGCAAAATATAGCGAGTCGCA
GTGTTGCTGGAAAGGGCGGGGAAGAGAAGGGGGAGGAATGGGCCGAGGAT
CACGACGGCGAGCAGGAGCAGCGACGATTGCAACAGCAGCAGCAGCAGCA
GCATTATCGTTTGGGCCGCAAATTTGAGGGGGGGGGACATGGAGAAATCT
GGCGAGCCTACTTGGTGGTGGAAGACGAGGGGGGGGGTTACAGGCTATCA
CCAGAGAGGTATGTGATGAAGAGGATGGCGATGGGGGAAGGAGGGAGGGA
GGGAGGGAAGATAAACACGGATATTTGGAGGTGTGGAGTGAGGGAGGTGG
TATTTGGGAGGAGGTTGAGGGGCAGACCGCATGTGGCGAGGTATGTCGAG
CATTTTTACAGGAACAGCAGTAGTAGTGCAAGGGAGGGAGGGGGGATGGG
AGGGGGGGAAGGGGAGGGGCTGGAGCTATGGATCGTCTTCCACGATGAAG
GGATAAGTCTACGGCGGTACCTCTACACTCCTACTCATCCTCCTCCTTCC
TCCTCGTCCTCCTCCTCCACCATCCCACCTTCCCCCCGTTCCTCTCATCA
CGCCTCCGATCCCCTCCTCTTCGAGCCCTCGGCCTTCTGGCGGCACCTCC
GTCTCAGCCCTGGAGGCGACGATGTCCTCAAAGGCCTCTTACGTCAAATT
TTAGAGG
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Coding sequence (CDS) from alignment at scaffold_17:477007..477963-

>mRNA_6938 ID=mRNA_6938|Name=jgi.p|Nanoce1779_2|596850|organism=Nannochloropsis oceanica|type=CDS|length=1056bp|location=Sequence derived from alignment at scaffold_17:477007..477963- (Nannochloropsis oceanica)
CCCTCGGCCTTCTGGCGGCACCTCCGTCTCAGCCCTGGAGGCGACGATGT
CCTCAAAGGCCTCTTACGTCAAATTTTAGATGCTCCCGTCCACGTCTTCT
TCATTTTGGCACCGGGAGGGTGTTGGTAGTGAAGGAAGGAAGGAGAGAGG
GAGGGAGGCAGGGGAGGAAGGATTGGGTTTGAGGAGGCTGATGGAGCAGC
TGGCAAAGGGATTCCGGCAGTGGCGGGATGGGGCCAGCCATTATCACCAC
CAGCATCATCCTCCTCCTCATCATCAGCAGCAGCACCGGCATCAGCAGCA
GCAAAATATAGCGAGTCGCAGTGTTGCTGGAAAGGGCGGGGAAGAGAAGG
GGGAGGAATGGGCCGAGGATCACGACGGCGAGCAGGAGCAGCGACGATTG
CAACAGCAGCAGCAGCAGCAGCATTATCGTTTGGGCCGCAAATTTGAGGG
GGGGGGACATGGAGAAATCTGGCGAGCCTACTTGGTGGTGGAAGACGAGG
GGGGGGGTTACAGGCTATCACCAGAGAGCCCTCGGCCTTCTGGCGGCACC
TCCGTCTCAGCCCTGGAGGCGACGATGTCCTCAAAGGCCTCTTACGTCAA
ATTTTAGATGCTCCCGTCCACGTCTTCTTCATTTTGGCACCGGGAGGGTG
TTGGTAGTGAAGGAAGGAAGGAGAGAGGGAGGGAGGCAGGGGAGGAAGGA
TTGGGTTTGAGGAGGCTGATGGAGCAGCTGGCAAAGGGATTCCGGCAGTG
GCGGGATGGGGCCAGCCATTATCACCACCAGCATCATCCTCCTCCTCATC
ATCAGCAGCAGCACCGGCATCAGCAGCAGCAAAATATAGCGAGTCGCAGT
GTTGCTGGAAAGGGCGGGGAAGAGAAGGGGGAGGAATGGGCCGAGGATCA
CGACGGCGAGCAGGAGCAGCGACGATTGCAACAGCAGCAGCAGCAGCAGC
ATTATCGTTTGGGCCGCAAATTTGAGGGGGGGGGACATGGAGAAATCTGG
CGAGCCTACTTGGTGGTGGAAGACGAGGGGGGGGGTTACAGGCTATCACC
AGAGAG
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Synonyms
Publications