jgi.p|Nanoce1779_2|116994, mRNA_6936 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|116994
Unique NamemRNA_6936
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1457
Alignment locationscaffold_17:472544..474000 +

Link to JBrowse

Properties
Property NameValue
TranscriptId117080
TrackFilteredModels2
ProteinId116994
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:472544..474000 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|116994gene_6936Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|116994mRNA_6936-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6936CDS_6936Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6936 ID=mRNA_6936|Name=jgi.p|Nanoce1779_2|116994|organism=Nannochloropsis oceanica|type=mRNA|length=1457bp
GCAGGGAGAGGATGGGGATAGACTTAGGTGAGATCATCTCTTAATAACCT
GGTGAGCCACACACAGACATGACCATAGCAGCGGAAAGCTGACAAGGACT
GTCCTTGTCCCGCATGCAATGCTACCATGTCTAACTTGGCTGTGAGAGCT
GTAGACGTGGACGCTTCCAAGTTGCATCATCGCCGACGAGACGGCAACAA
CCGAGCAACCATAAGCCTCCTCCCCCTAATGCATTTCCCAAACCGCTCGC
ACACACAGCCGCGCCAGCAGCAACTATGTCTTGATAACGACCTCCATGTC
CTCGTCCTTGTGCTCCACTCCGAAAATGCTGCCACCCTTCCTTCTCCTTT
CCTTCATCCTCATCCTCCTCCTCCTCCTTCCTCCATCCCTAGCCTTCCTC
CCCCCAGTCCTCCTCTGCTCCTCCTCTTCTTCCACAACCACCACCACCAC
CTCAACAAGCCTGGACGCCGGTCTCTCCTGGCGAACCGATGAGATCTATC
ACTCCCAACCGGACTTCCCAGTCCTCTTTCTAGCTACACGCAACGAGACG
TATGCCCGTGAAGTCGAACGGCATTTTGGGGGCCAGGGTTACTTTGTCCG
TTCCAGTCGTACCCTCACCCGGCTAGCCAAAATGGTCAAGACTACGAGGC
CAGAAGGGATCTTGATAAGCGATCACTTGTCCACGTCACATATTTTGGGT
TTCTTAGCTAATTTGAGGGATTTGCCTGATTTGTGGTTAATCCCAATTTT
CATTGTGCATGACCTTCCTTCACCTACTGCTGCTACTGCTGCTGTTGGAG
GAAGCGATGGTACTGCTGTAGACGGCGAGGGATCGGGGAAACAAGAGGTT
GACAGCAGCAGCAGCAAGAGCAGCCGGCATCGGATACGGAAGAAAAAGTC
CCTCCAAGACGACATCATTGATGCAGATTACACCCCTCCTTCCCTCGCTT
CCTCATCCTCACCTCTTTCCCAAAAAGATCAAGAACAAAGACAACAGCAA
TGGCGACAATACCACCTCGAGATGCTCCGTCTCGGTGTTCGTGGCATCAT
CACCCCTTCCTCACCTCCCCTCCCCGAGCTCCAAGCCTTGCTCGACGGGG
CAAAAGTCACCCGGGGACGAGTCGAAAATTTAGTCTCTACTCTGCAGGGA
GGAGTTCTCCACCTCTCGCAACACCAGAAGCGTCTTCTCCCTTCCACAAT
TACGCTTGAAGGCCCCCCGCCTCGTTTCACGAACACGGAGCAGGAGGTTT
TAAATTTGTTAAGTCGGGGGATGACGGACCAGCAGATAGCTTACTCCTTG
GGCTGTACAAGCGCGACGGTGGGGAATGCAGTGAGAGGGTTGTTGAAAAA
ATTGGAGGTGGATCTGAGGGGGGAGCTTATCCGGGTAGCAATGGATAATG
ATTTGCTGACTGAATAGTGGGTCCTCTTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTC
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protein sequence of jgi.p|Nanoce1779_2|116994

>mRNA_6936-protein ID=mRNA_6936-protein|Name=jgi.p|Nanoce1779_2|116994|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MSSSLCSTPKMLPPFLLLSFILILLLLLPPSLAFLPPVLLCSSSSSTTTT
TTSTSLDAGLSWRTDEIYHSQPDFPVLFLATRNETYAREVERHFGGQGYF
VRSSRTLTRLAKMVKTTRPEGILISDHLSTSHILGFLANLRDLPDLWLIP
IFIVHDLPSPTAATAAVGGSDGTAVDGEGSGKQEVDSSSSKSSRHRIRKK
KSLQDDIIDADYTPPSLASSSSPLSQKDQEQRQQQWRQYHLEMLRLGVRG
IITPSSPPLPELQALLDGAKVTRGRVENLVSTLQGGVLHLSQHQKRLLPS
TITLEGPPPRFTNTEQEVLNLLSRGMTDQQIAYSLGCTSATVGNAVRGLL
KKLEVDLRGELIRVAMDNDLLTE*
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mRNA from alignment at scaffold_17:472544..474000+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6936 ID=mRNA_6936|Name=jgi.p|Nanoce1779_2|116994|organism=Nannochloropsis oceanica|type=mRNA|length=1457bp|location=Sequence derived from alignment at scaffold_17:472544..474000+ (Nannochloropsis oceanica)
GCAGGGAGAGGATGGGGATAGACTTAGGTGAGATCATCTCTTAATAACCT
GGTGAGCCACACACAGACATGACCATAGCAGCGGAAAGCTGACAAGGACT
GTCCTTGTCCCGCATGCAATGCTACCATGTCTAACTTGGCTGTGAGAGCT
GTAGACGTGGACGCTTCCAAGTTGCATCATCGCCGACGAGACGGCAACAA
CCGAGCAACCATAAGCCTCCTCCCCCTAATGCATTTCCCAAACCGCTCGC
ACACACAGCCGCGCCAGCAGCAACTATGTCTTGATAACGACCTCCATGTC
CTCGTCCTTGTGCTCCACTCCGAAAATGCTGCCACCCTTCCTTCTCCTTT
CCTTCATCCTCATCCTCCTCCTCCTCCTTCCTCCATCCCTAGCCTTCCTC
CCCCCAGTCCTCCTCTGCTCCTCCTCTTCTTCCACAACCACCACCACCAC
CTCAACAAGCCTGGACGCCGGTCTCTCCTGGCGAACCGATGAGATCTATC
ACTCCCAACCGGACTTCCCAGTCCTCTTTCTAGCTACACGCAACGAGACG
TATGCCCGTGAAGTCGAACGGCATTTTGGGGGCCAGGGTTACTTTGTCCG
TTCCAGTCGTACCCTCACCCGGCTAGCCAAAATGGTCAAGACTACGAGGC
CAGAAGGGATCTTGATAAGCGATCACTTGTCCACGTCACATATTTTGGGT
TTCTTAGCTAATTTGAGGGATTTGCCTGATTTGTGGTTAATCCCAATTTT
CATTGTGCATGACCTTCCTTCACCTACTGCTGCTACTGCTGCTGTTGGAG
GAAGCGATGGTACTGCTGTAGACGGCGAGGGATCGGGGAAACAAGAGGTT
GACAGCAGCAGCAGCAAGAGCAGCCGGCATCGGATACGGAAGAAAAAGTC
CCTCCAAGACGACATCATTGATGCAGATTACACCCCTCCTTCCCTCGCTT
CCTCATCCTCACCTCTTTCCCAAAAAGATCAAGAACAAAGACAACAGCAA
TGGCGACAATACCACCTCGAGATGCTCCGTCTCGGTGTTCGTGGCATCAT
CACCCCTTCCTCACCTCCCCTCCCCGAGCTCCAAGCCTTGCTCGACGGGG
CAAAAGTCACCCGGGGACGAGTCGAAAATTTAGTCTCTACTCTGCAGGGA
GGAGTTCTCCACCTCTCGCAACACCAGAAGCGTCTTCTCCCTTCCACAAT
TACGCTTGAAGGCCCCCCGCCTCGTTTCACGAACACGGAGCAGGAGGTTT
TAAATTTGTTAAGTCGGGGGATGACGGACCAGCAGATAGCTTACTCCTTG
GGCTGTACAAGCGCGACGGTGGGGAATGCAGTGAGAGGGTTGTTGAAAAA
ATTGGAGGTGGATCTGAGGGGGGAGCTTATCCGGGTAGCAATGGATAATG
ATTTGCTGACTGAATAGTGGGTCCTCTTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTC
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Coding sequence (CDS) from alignment at scaffold_17:472544..474000+

>mRNA_6936 ID=mRNA_6936|Name=jgi.p|Nanoce1779_2|116994|organism=Nannochloropsis oceanica|type=CDS|length=1122bp|location=Sequence derived from alignment at scaffold_17:472544..474000+ (Nannochloropsis oceanica)
ATGTCCTCGTCCTTGTGCTCCACTCCGAAAATGCTGCCACCCTTCCTTCT
CCTTTCCTTCATCCTCATCCTCCTCCTCCTCCTTCCTCCATCCCTAGCCT
TCCTCCCCCCAGTCCTCCTCTGCTCCTCCTCTTCTTCCACAACCACCACC
ACCACCTCAACAAGCCTGGACGCCGGTCTCTCCTGGCGAACCGATGAGAT
CTATCACTCCCAACCGGACTTCCCAGTCCTCTTTCTAGCTACACGCAACG
AGACGTATGCCCGTGAAGTCGAACGGCATTTTGGGGGCCAGGGTTACTTT
GTCCGTTCCAGTCGTACCCTCACCCGGCTAGCCAAAATGGTCAAGACTAC
GAGGCCAGAAGGGATCTTGATAAGCGATCACTTGTCCACGTCACATATTT
TGGGTTTCTTAGCTAATTTGAGGGATTTGCCTGATTTGTGGTTAATCCCA
ATTTTCATTGTGCATGACCTTCCTTCACCTACTGCTGCTACTGCTGCTGT
TGGAGGAAGCGATGGTACTGCTGTAGACGGCGAGGGATCGGGGAAACAAG
AGGTTGACAGCAGCAGCAGCAAGAGCAGCCGGCATCGGATACGGAAGAAA
AAGTCCCTCCAAGACGACATCATTGATGCAGATTACACCCCTCCTTCCCT
CGCTTCCTCATCCTCACCTCTTTCCCAAAAAGATCAAGAACAAAGACAAC
AGCAATGGCGACAATACCACCTCGAGATGCTCCGTCTCGGTGTTCGTGGC
ATCATCACCCCTTCCTCACCTCCCCTCCCCGAGCTCCAAGCCTTGCTCGA
CGGGGCAAAAGTCACCCGGGGACGAGTCGAAAATTTAGTCTCTACTCTGC
AGGGAGGAGTTCTCCACCTCTCGCAACACCAGAAGCGTCTTCTCCCTTCC
ACAATTACGCTTGAAGGCCCCCCGCCTCGTTTCACGAACACGGAGCAGGA
GGTTTTAAATTTGTTAAGTCGGGGGATGACGGACCAGCAGATAGCTTACT
CCTTGGGCTGTACAAGCGCGACGGTGGGGAATGCAGTGAGAGGGTTGTTG
AAAAAATTGGAGGTGGATCTGAGGGGGGAGCTTATCCGGGTAGCAATGGA
TAATGATTTGCTGACTGAATAG
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Synonyms
Publications