Properties
| Property Name | Value |
|---|
| TranscriptId | 117080 |
| Track | FilteredModels2 |
| ProteinId | 116994 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_17 | supercontig | scaffold_17:472544..474000 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6936 ID=mRNA_6936|Name=jgi.p|Nanoce1779_2|116994|organism=Nannochloropsis oceanica|type=mRNA|length=1457bp
GCAGGGAGAGGATGGGGATAGACTTAGGTGAGATCATCTCTTAATAACCT
GGTGAGCCACACACAGACATGACCATAGCAGCGGAAAGCTGACAAGGACT
GTCCTTGTCCCGCATGCAATGCTACCATGTCTAACTTGGCTGTGAGAGCT
GTAGACGTGGACGCTTCCAAGTTGCATCATCGCCGACGAGACGGCAACAA
CCGAGCAACCATAAGCCTCCTCCCCCTAATGCATTTCCCAAACCGCTCGC
ACACACAGCCGCGCCAGCAGCAACTATGTCTTGATAACGACCTCCATGTC
CTCGTCCTTGTGCTCCACTCCGAAAATGCTGCCACCCTTCCTTCTCCTTT
CCTTCATCCTCATCCTCCTCCTCCTCCTTCCTCCATCCCTAGCCTTCCTC
CCCCCAGTCCTCCTCTGCTCCTCCTCTTCTTCCACAACCACCACCACCAC
CTCAACAAGCCTGGACGCCGGTCTCTCCTGGCGAACCGATGAGATCTATC
ACTCCCAACCGGACTTCCCAGTCCTCTTTCTAGCTACACGCAACGAGACG
TATGCCCGTGAAGTCGAACGGCATTTTGGGGGCCAGGGTTACTTTGTCCG
TTCCAGTCGTACCCTCACCCGGCTAGCCAAAATGGTCAAGACTACGAGGC
CAGAAGGGATCTTGATAAGCGATCACTTGTCCACGTCACATATTTTGGGT
TTCTTAGCTAATTTGAGGGATTTGCCTGATTTGTGGTTAATCCCAATTTT
CATTGTGCATGACCTTCCTTCACCTACTGCTGCTACTGCTGCTGTTGGAG
GAAGCGATGGTACTGCTGTAGACGGCGAGGGATCGGGGAAACAAGAGGTT
GACAGCAGCAGCAGCAAGAGCAGCCGGCATCGGATACGGAAGAAAAAGTC
CCTCCAAGACGACATCATTGATGCAGATTACACCCCTCCTTCCCTCGCTT
CCTCATCCTCACCTCTTTCCCAAAAAGATCAAGAACAAAGACAACAGCAA
TGGCGACAATACCACCTCGAGATGCTCCGTCTCGGTGTTCGTGGCATCAT
CACCCCTTCCTCACCTCCCCTCCCCGAGCTCCAAGCCTTGCTCGACGGGG
CAAAAGTCACCCGGGGACGAGTCGAAAATTTAGTCTCTACTCTGCAGGGA
GGAGTTCTCCACCTCTCGCAACACCAGAAGCGTCTTCTCCCTTCCACAAT
TACGCTTGAAGGCCCCCCGCCTCGTTTCACGAACACGGAGCAGGAGGTTT
TAAATTTGTTAAGTCGGGGGATGACGGACCAGCAGATAGCTTACTCCTTG
GGCTGTACAAGCGCGACGGTGGGGAATGCAGTGAGAGGGTTGTTGAAAAA
ATTGGAGGTGGATCTGAGGGGGGAGCTTATCCGGGTAGCAATGGATAATG
ATTTGCTGACTGAATAGTGGGTCCTCTTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTC back to topprotein sequence of jgi.p|Nanoce1779_2|116994 >mRNA_6936-protein ID=mRNA_6936-protein|Name=jgi.p|Nanoce1779_2|116994|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MSSSLCSTPKMLPPFLLLSFILILLLLLPPSLAFLPPVLLCSSSSSTTTT
TTSTSLDAGLSWRTDEIYHSQPDFPVLFLATRNETYAREVERHFGGQGYF
VRSSRTLTRLAKMVKTTRPEGILISDHLSTSHILGFLANLRDLPDLWLIP
IFIVHDLPSPTAATAAVGGSDGTAVDGEGSGKQEVDSSSSKSSRHRIRKK
KSLQDDIIDADYTPPSLASSSSPLSQKDQEQRQQQWRQYHLEMLRLGVRG
IITPSSPPLPELQALLDGAKVTRGRVENLVSTLQGGVLHLSQHQKRLLPS
TITLEGPPPRFTNTEQEVLNLLSRGMTDQQIAYSLGCTSATVGNAVRGLL
KKLEVDLRGELIRVAMDNDLLTE* back to topmRNA from alignment at scaffold_17:472544..474000+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6936 ID=mRNA_6936|Name=jgi.p|Nanoce1779_2|116994|organism=Nannochloropsis oceanica|type=mRNA|length=1457bp|location=Sequence derived from alignment at scaffold_17:472544..474000+ (Nannochloropsis oceanica)
GCAGGGAGAGGATGGGGATAGACTTAGGTGAGATCATCTCTTAATAACCT
GGTGAGCCACACACAGACATGACCATAGCAGCGGAAAGCTGACAAGGACT
GTCCTTGTCCCGCATGCAATGCTACCATGTCTAACTTGGCTGTGAGAGCT
GTAGACGTGGACGCTTCCAAGTTGCATCATCGCCGACGAGACGGCAACAA
CCGAGCAACCATAAGCCTCCTCCCCCTAATGCATTTCCCAAACCGCTCGC
ACACACAGCCGCGCCAGCAGCAACTATGTCTTGATAACGACCTCCATGTC
CTCGTCCTTGTGCTCCACTCCGAAAATGCTGCCACCCTTCCTTCTCCTTT
CCTTCATCCTCATCCTCCTCCTCCTCCTTCCTCCATCCCTAGCCTTCCTC
CCCCCAGTCCTCCTCTGCTCCTCCTCTTCTTCCACAACCACCACCACCAC
CTCAACAAGCCTGGACGCCGGTCTCTCCTGGCGAACCGATGAGATCTATC
ACTCCCAACCGGACTTCCCAGTCCTCTTTCTAGCTACACGCAACGAGACG
TATGCCCGTGAAGTCGAACGGCATTTTGGGGGCCAGGGTTACTTTGTCCG
TTCCAGTCGTACCCTCACCCGGCTAGCCAAAATGGTCAAGACTACGAGGC
CAGAAGGGATCTTGATAAGCGATCACTTGTCCACGTCACATATTTTGGGT
TTCTTAGCTAATTTGAGGGATTTGCCTGATTTGTGGTTAATCCCAATTTT
CATTGTGCATGACCTTCCTTCACCTACTGCTGCTACTGCTGCTGTTGGAG
GAAGCGATGGTACTGCTGTAGACGGCGAGGGATCGGGGAAACAAGAGGTT
GACAGCAGCAGCAGCAAGAGCAGCCGGCATCGGATACGGAAGAAAAAGTC
CCTCCAAGACGACATCATTGATGCAGATTACACCCCTCCTTCCCTCGCTT
CCTCATCCTCACCTCTTTCCCAAAAAGATCAAGAACAAAGACAACAGCAA
TGGCGACAATACCACCTCGAGATGCTCCGTCTCGGTGTTCGTGGCATCAT
CACCCCTTCCTCACCTCCCCTCCCCGAGCTCCAAGCCTTGCTCGACGGGG
CAAAAGTCACCCGGGGACGAGTCGAAAATTTAGTCTCTACTCTGCAGGGA
GGAGTTCTCCACCTCTCGCAACACCAGAAGCGTCTTCTCCCTTCCACAAT
TACGCTTGAAGGCCCCCCGCCTCGTTTCACGAACACGGAGCAGGAGGTTT
TAAATTTGTTAAGTCGGGGGATGACGGACCAGCAGATAGCTTACTCCTTG
GGCTGTACAAGCGCGACGGTGGGGAATGCAGTGAGAGGGTTGTTGAAAAA
ATTGGAGGTGGATCTGAGGGGGGAGCTTATCCGGGTAGCAATGGATAATG
ATTTGCTGACTGAATAGTGGGTCCTCTTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTC back to topCoding sequence (CDS) from alignment at scaffold_17:472544..474000+ >mRNA_6936 ID=mRNA_6936|Name=jgi.p|Nanoce1779_2|116994|organism=Nannochloropsis oceanica|type=CDS|length=1122bp|location=Sequence derived from alignment at scaffold_17:472544..474000+ (Nannochloropsis oceanica)
ATGTCCTCGTCCTTGTGCTCCACTCCGAAAATGCTGCCACCCTTCCTTCT
CCTTTCCTTCATCCTCATCCTCCTCCTCCTCCTTCCTCCATCCCTAGCCT
TCCTCCCCCCAGTCCTCCTCTGCTCCTCCTCTTCTTCCACAACCACCACC
ACCACCTCAACAAGCCTGGACGCCGGTCTCTCCTGGCGAACCGATGAGAT
CTATCACTCCCAACCGGACTTCCCAGTCCTCTTTCTAGCTACACGCAACG
AGACGTATGCCCGTGAAGTCGAACGGCATTTTGGGGGCCAGGGTTACTTT
GTCCGTTCCAGTCGTACCCTCACCCGGCTAGCCAAAATGGTCAAGACTAC
GAGGCCAGAAGGGATCTTGATAAGCGATCACTTGTCCACGTCACATATTT
TGGGTTTCTTAGCTAATTTGAGGGATTTGCCTGATTTGTGGTTAATCCCA
ATTTTCATTGTGCATGACCTTCCTTCACCTACTGCTGCTACTGCTGCTGT
TGGAGGAAGCGATGGTACTGCTGTAGACGGCGAGGGATCGGGGAAACAAG
AGGTTGACAGCAGCAGCAGCAAGAGCAGCCGGCATCGGATACGGAAGAAA
AAGTCCCTCCAAGACGACATCATTGATGCAGATTACACCCCTCCTTCCCT
CGCTTCCTCATCCTCACCTCTTTCCCAAAAAGATCAAGAACAAAGACAAC
AGCAATGGCGACAATACCACCTCGAGATGCTCCGTCTCGGTGTTCGTGGC
ATCATCACCCCTTCCTCACCTCCCCTCCCCGAGCTCCAAGCCTTGCTCGA
CGGGGCAAAAGTCACCCGGGGACGAGTCGAAAATTTAGTCTCTACTCTGC
AGGGAGGAGTTCTCCACCTCTCGCAACACCAGAAGCGTCTTCTCCCTTCC
ACAATTACGCTTGAAGGCCCCCCGCCTCGTTTCACGAACACGGAGCAGGA
GGTTTTAAATTTGTTAAGTCGGGGGATGACGGACCAGCAGATAGCTTACT
CCTTGGGCTGTACAAGCGCGACGGTGGGGAATGCAGTGAGAGGGTTGTTG
AAAAAATTGGAGGTGGATCTGAGGGGGGAGCTTATCCGGGTAGCAATGGA
TAATGATTTGCTGACTGAATAG back to top
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