|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 596926 |
| Track | FilteredModels2 |
| ProteinId | 596840 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_17 | supercontig | scaffold_17:470709..472533 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6935 ID=mRNA_6935|Name=jgi.p|Nanoce1779_2|596840|organism=Nannochloropsis oceanica|type=mRNA|length=1205bp
ACAGGCACCTCTAGGATGTCCAACCCAGCAGCAAGAAGAAGAGCAGCAGC
AGTAGTAGCTGCCCGCGCCAGCCCCCATCTGTCCCCTCGCCTCCTCCTCC
TTTTCCTGATTGTGACCATTACAGCGACGCACGCTTTTCTCCCTTCCTAC
CTCCCGTCCTTCTCCTCCTCCCACTCCCGCAGCCCCACCTGTCTCAATGC
CGGAGGGGGCAACAGTCTCAACCGCGAGGAACTACGGAAATCCCTCGTCG
CCGAAGGGGTCGAAGACATTCTTGCTGCCCGTGCCGTCGAGGCAGCTGAT
AAAGCCCTGACGAACTGGGAGATGCAAGTCCTCGAGTTTTGTCGTCCCCC
TGAAGTAGCAACCATCAAAAGGGTTTTGGAGCGTGTGGCTGACTTAGCCA
TCACGCCCGACGGCGGATTCCCTCAAGCAGAGCGCCAACGTGTGTTTTTC
GCCCGGACAGTTGACTACGAGCTCGACCAGGAGCAAGAACGCCGGGAGAG
AGAAGCATACTTCACCTCGGTGTCGGTGGAGGGCAATTTCATTTTTGACA
AGGCGAGCCATAGGGATTTCTTGGGGGCTTTGTTGGGGACGGGGATAACA
AGGGAGAAGGTGGGTGACATTTTACTGCAAGGCGAACGAGGCGCTCACGT
AATCATGGCTCCGGAGGTAGCCGAATACGTCATGACCGCGTTGGCATCCG
TGCGGAGTGTGCCTGTGAAAAACAAGGCCATCCCTCTGAAAGAGTTGGGG
GTAAGGCCCCCGGTGACCAAGGAGATGCAATCGGTGGAGGCTTCCATGCG
TCTGGATGCAGTGGCCAGCGCCGGGATGGGCATGAGCCGGAGCAAGCTCA
AGGATATGATTGAGAGCGGCGACGTTCTAGTAAATTGGAAGGAGACGAAA
TCCGCCAACTCGTTGTTGAAAGGCGGTGACATCGTCACCATCCGTGGAAA
AGGCCGTCTGGAGGTCAACGAGGTTGAGACGACGAGCAAAGGCAAATTCC
GCGTCAAGATGACCAAGTTTATCTAGGCGTCATCTAAGACCCGATGGGAT
CAGGTCGAGGGATGGAATGACGGGAGTGTGGGATCGAGGAGGGAGGGGAG
GGTAAGAGGGAGGCTTACCCATCAAGCAGCAGCAGCAGCAGCAGCAGCAG
TAGCAGTTGCGATCATGACCATCACAGAGACCCTTCATCCTTAGGCATGC
GGGAG back to topprotein sequence of jgi.p|Nanoce1779_2|596840 >mRNA_6935-protein ID=mRNA_6935-protein|Name=jgi.p|Nanoce1779_2|596840|organism=Nannochloropsis oceanica|type=polypeptide|length=337bp
MSNPAARRRAAAVVAARASPHLSPRLLLLFLIVTITATHAFLPSYLPSFS
SSHSRSPTCLNAGGGNSLNREELRKSLVAEGVEDILAARAVEAADKALTN
WEMQVLEFCRPPEVATIKRVLERVADLAITPDGGFPQAERQRVFFARTVD
YELDQEQERREREAYFTSVSVEGNFIFDKASHRDFLGALLGTGITREKVG
DILLQGERGAHVIMAPEVAEYVMTALASVRSVPVKNKAIPLKELGVRPPV
TKEMQSVEASMRLDAVASAGMGMSRSKLKDMIESGDVLVNWKETKSANSL
LKGGDIVTIRGKGRLEVNEVETTSKGKFRVKMTKFI* back to topmRNA from alignment at scaffold_17:470709..472533- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6935 ID=mRNA_6935|Name=jgi.p|Nanoce1779_2|596840|organism=Nannochloropsis oceanica|type=mRNA|length=1825bp|location=Sequence derived from alignment at scaffold_17:470709..472533- (Nannochloropsis oceanica)
ACAGGCACCTCTAGGATGTCCAACCCAGCAGCAAGAAGAAGAGCAGCAGC
AGTAGTAGCTGCCCGCGCCAGCCCCCATCTGTCCCCTCGCCTCCTCCTCC
TTTTCCTGATTGTGACCATTACAGCGACGCACGCTTTTCTCCCTTCCTAC
CTCCCGTCCTTCTCCTCCTCCCACTCCCGCAGCCCCACCTGTCTCAATGC
CGGAGGGGGCAACAGTCTCAACCGCGAGGAACTACGGAAATCCCTCGTCG
CCGAAGGGGTCGAAGACATTCTTGCTGCCCGTGCCGTCGAGGCAGCTGAT
AAAGCCCTGACGAACTGGGAGATGCAAGTCCTCGAGTTTTGTCGTCCCCC
TGAAGTAGCAACCATCAAAAGGGTTTTGGAGCGTGTGGCTGACTTAGCCA
TCACGCCCGACGGCGGATTCCCTCAAGCAGAGCGCCAACGTGTGTTTTTC
GCCCGGACAGTTGACTACGAGCTCGACCAGGAGCAAGAACGCCGGGAGAG
AGAAGCATACTTCACCTCGGTGTCGGTGGAGGGCAATTTCATTTTTGACA
AGGCGAGCCATAGGGATTTCTTGGGGGCTTTGTTGGGGACGGGGATAACA
AGGGAGAAGGTAAAAGGAACAAGAAAGAAAACAGACAGGCAGGCAGAAAG
GCAGGGAGAGGGGAAGAGGGGGAGGGCAGGAAGAAGGAAAAGATGGGACT
TGTGTCGTCAACTTCGAAGCGGGCCTTTTCTCCCCCTTTACCACGACCTC
TCATGTCATCTCTTTGCATTCTTAGGTGGGTGACATTTTACTGCAAGGCG
AACGAGGCGCTCACGTAATCATGGCTCCGGAGGTAGCCGAATACGTCATG
ACCGCGTTGGCATCCGTGCGGAGTGTGCCTGTGAAAAACAAGGCCATCCC
TCTGAAAGAGTTGGGGGTAAGGCCCCCGGTGACCAAGGAGGTAAGAAGTG
GAATAGGGAAGGGTCGTGAGAGGGCGGACGGGAACTAGCGACCGATGGCT
AGAAGAGGAGGAGACGTCGTGAAGAATACTCGGCTTTCTCGTCCTGAAGG
CGTGCGTATTTGTACATGCTCGCTTGTCGTCTTCACTTGTTCGGACACAC
CTTCCTTCCTCGCTCTTTCTTCCACACACAGATGCAATCGGTGGAGGCTT
CCATGCGTCTGGATGCAGTGGCCAGCGCCGGGATGGGCATGAGCCGGAGC
AAGCTCAAGGTAGGTAGGTAGGCCACATCTCCACGGGCCCCGGGGACACT
CACACCTTTCCCTTCCCCTTTCCCCCTTCACCCTTTCTTTTTTGTGCACG
AAAATGATTTTGGCATTGCTTAGGGTGTCTTGTTCTGGTGCATGTATTCC
TTTTCTACTGCCCTATCTGGCAGCCAAAAATGTGCTTCCGTCGAGCTAAA
ATTTTATCTCCAACTCAACATTTCTTTTCCTCCTTCCATTCCTCCCTCCC
GCCCTCCTCCCTTTTCTCGTAGGATATGATTGAGAGCGGCGACGTTCTAG
TAAATTGGAAGGAGACGAAATCCGCCAACTCGTTGTTGAAAGGCGGTGAC
ATCGTCACCATCCGTGGAAAAGGCCGTCTGGAGGTCAACGAGGTTGAGAC
GACGAGCAAAGGCAAATTCCGCGTCAAGATGACCAAGTTTATCTAGGCGT
CATCTAAGACCCGATGGGATCAGGTCGAGGGATGGAATGACGGGAGTGTG
GGATCGAGGAGGGAGGGGAGGGTAAGAGGGAGGCTTACCCATCAAGCAGC
AGCAGCAGCAGCAGCAGCAGTAGCAGTTGCGATCATGACCATCACAGAGA
CCCTTCATCCTTAGGCATGCGGGAG back to topCoding sequence (CDS) from alignment at scaffold_17:470709..472533- >mRNA_6935 ID=mRNA_6935|Name=jgi.p|Nanoce1779_2|596840|organism=Nannochloropsis oceanica|type=CDS|length=4044bp|location=Sequence derived from alignment at scaffold_17:470709..472533- (Nannochloropsis oceanica)
GATATGATTGAGAGCGGCGACGTTCTAGTAAATTGGAAGGAGACGAAATC
CGCCAACTCGTTGTTGAAAGGCGGTGACATCGTCACCATCCGTGGAAAAG
GCCGTCTGGAGGTCAACGAGGTTGAGACGACGAGCAAAGGCAAATTCCGC
GTCAAGATGACCAAGTTTATCTAGATGCAATCGGTGGAGGCTTCCATGCG
TCTGGATGCAGTGGCCAGCGCCGGGATGGGCATGAGCCGGAGCAAGCTCA
AGGTGGGTGACATTTTACTGCAAGGCGAACGAGGCGCTCACGTAATCATG
GCTCCGGAGGTAGCCGAATACGTCATGACCGCGTTGGCATCCGTGCGGAG
TGTGCCTGTGAAAAACAAGGCCATCCCTCTGAAAGAGTTGGGGGTAAGGC
CCCCGGTGACCAAGGAGATGTCCAACCCAGCAGCAAGAAGAAGAGCAGCA
GCAGTAGTAGCTGCCCGCGCCAGCCCCCATCTGTCCCCTCGCCTCCTCCT
CCTTTTCCTGATTGTGACCATTACAGCGACGCACGCTTTTCTCCCTTCCT
ACCTCCCGTCCTTCTCCTCCTCCCACTCCCGCAGCCCCACCTGTCTCAAT
GCCGGAGGGGGCAACAGTCTCAACCGCGAGGAACTACGGAAATCCCTCGT
CGCCGAAGGGGTCGAAGACATTCTTGCTGCCCGTGCCGTCGAGGCAGCTG
ATAAAGCCCTGACGAACTGGGAGATGCAAGTCCTCGAGTTTTGTCGTCCC
CCTGAAGTAGCAACCATCAAAAGGGTTTTGGAGCGTGTGGCTGACTTAGC
CATCACGCCCGACGGCGGATTCCCTCAAGCAGAGCGCCAACGTGTGTTTT
TCGCCCGGACAGTTGACTACGAGCTCGACCAGGAGCAAGAACGCCGGGAG
AGAGAAGCATACTTCACCTCGGTGTCGGTGGAGGGCAATTTCATTTTTGA
CAAGGCGAGCCATAGGGATTTCTTGGGGGCTTTGTTGGGGACGGGGATAA
CAAGGGAGAAGGATATGATTGAGAGCGGCGACGTTCTAGTAAATTGGAAG
GAGACGAAATCCGCCAACTCGTTGTTGAAAGGCGGTGACATCGTCACCAT
CCGTGGAAAAGGCCGTCTGGAGGTCAACGAGGTTGAGACGACGAGCAAAG
GCAAATTCCGCGTCAAGATGACCAAGTTTATCTAGATGCAATCGGTGGAG
GCTTCCATGCGTCTGGATGCAGTGGCCAGCGCCGGGATGGGCATGAGCCG
GAGCAAGCTCAAGGTGGGTGACATTTTACTGCAAGGCGAACGAGGCGCTC
ACGTAATCATGGCTCCGGAGGTAGCCGAATACGTCATGACCGCGTTGGCA
TCCGTGCGGAGTGTGCCTGTGAAAAACAAGGCCATCCCTCTGAAAGAGTT
GGGGGTAAGGCCCCCGGTGACCAAGGAGATGTCCAACCCAGCAGCAAGAA
GAAGAGCAGCAGCAGTAGTAGCTGCCCGCGCCAGCCCCCATCTGTCCCCT
CGCCTCCTCCTCCTTTTCCTGATTGTGACCATTACAGCGACGCACGCTTT
TCTCCCTTCCTACCTCCCGTCCTTCTCCTCCTCCCACTCCCGCAGCCCCA
CCTGTCTCAATGCCGGAGGGGGCAACAGTCTCAACCGCGAGGAACTACGG
AAATCCCTCGTCGCCGAAGGGGTCGAAGACATTCTTGCTGCCCGTGCCGT
CGAGGCAGCTGATAAAGCCCTGACGAACTGGGAGATGCAAGTCCTCGAGT
TTTGTCGTCCCCCTGAAGTAGCAACCATCAAAAGGGTTTTGGAGCGTGTG
GCTGACTTAGCCATCACGCCCGACGGCGGATTCCCTCAAGCAGAGCGCCA
ACGTGTGTTTTTCGCCCGGACAGTTGACTACGAGCTCGACCAGGAGCAAG
AACGCCGGGAGAGAGAAGCATACTTCACCTCGGTGTCGGTGGAGGGCAAT
TTCATTTTTGACAAGGCGAGCCATAGGGATTTCTTGGGGGCTTTGTTGGG
GACGGGGATAACAAGGGAGAAGGATATGATTGAGAGCGGCGACGTTCTAG
TAAATTGGAAGGAGACGAAATCCGCCAACTCGTTGTTGAAAGGCGGTGAC
ATCGTCACCATCCGTGGAAAAGGCCGTCTGGAGGTCAACGAGGTTGAGAC
GACGAGCAAAGGCAAATTCCGCGTCAAGATGACCAAGTTTATCTAGATGC
AATCGGTGGAGGCTTCCATGCGTCTGGATGCAGTGGCCAGCGCCGGGATG
GGCATGAGCCGGAGCAAGCTCAAGGTGGGTGACATTTTACTGCAAGGCGA
ACGAGGCGCTCACGTAATCATGGCTCCGGAGGTAGCCGAATACGTCATGA
CCGCGTTGGCATCCGTGCGGAGTGTGCCTGTGAAAAACAAGGCCATCCCT
CTGAAAGAGTTGGGGGTAAGGCCCCCGGTGACCAAGGAGATGTCCAACCC
AGCAGCAAGAAGAAGAGCAGCAGCAGTAGTAGCTGCCCGCGCCAGCCCCC
ATCTGTCCCCTCGCCTCCTCCTCCTTTTCCTGATTGTGACCATTACAGCG
ACGCACGCTTTTCTCCCTTCCTACCTCCCGTCCTTCTCCTCCTCCCACTC
CCGCAGCCCCACCTGTCTCAATGCCGGAGGGGGCAACAGTCTCAACCGCG
AGGAACTACGGAAATCCCTCGTCGCCGAAGGGGTCGAAGACATTCTTGCT
GCCCGTGCCGTCGAGGCAGCTGATAAAGCCCTGACGAACTGGGAGATGCA
AGTCCTCGAGTTTTGTCGTCCCCCTGAAGTAGCAACCATCAAAAGGGTTT
TGGAGCGTGTGGCTGACTTAGCCATCACGCCCGACGGCGGATTCCCTCAA
GCAGAGCGCCAACGTGTGTTTTTCGCCCGGACAGTTGACTACGAGCTCGA
CCAGGAGCAAGAACGCCGGGAGAGAGAAGCATACTTCACCTCGGTGTCGG
TGGAGGGCAATTTCATTTTTGACAAGGCGAGCCATAGGGATTTCTTGGGG
GCTTTGTTGGGGACGGGGATAACAAGGGAGAAGGATATGATTGAGAGCGG
CGACGTTCTAGTAAATTGGAAGGAGACGAAATCCGCCAACTCGTTGTTGA
AAGGCGGTGACATCGTCACCATCCGTGGAAAAGGCCGTCTGGAGGTCAAC
GAGGTTGAGACGACGAGCAAAGGCAAATTCCGCGTCAAGATGACCAAGTT
TATCTAGATGCAATCGGTGGAGGCTTCCATGCGTCTGGATGCAGTGGCCA
GCGCCGGGATGGGCATGAGCCGGAGCAAGCTCAAGGTGGGTGACATTTTA
CTGCAAGGCGAACGAGGCGCTCACGTAATCATGGCTCCGGAGGTAGCCGA
ATACGTCATGACCGCGTTGGCATCCGTGCGGAGTGTGCCTGTGAAAAACA
AGGCCATCCCTCTGAAAGAGTTGGGGGTAAGGCCCCCGGTGACCAAGGAG
ATGTCCAACCCAGCAGCAAGAAGAAGAGCAGCAGCAGTAGTAGCTGCCCG
CGCCAGCCCCCATCTGTCCCCTCGCCTCCTCCTCCTTTTCCTGATTGTGA
CCATTACAGCGACGCACGCTTTTCTCCCTTCCTACCTCCCGTCCTTCTCC
TCCTCCCACTCCCGCAGCCCCACCTGTCTCAATGCCGGAGGGGGCAACAG
TCTCAACCGCGAGGAACTACGGAAATCCCTCGTCGCCGAAGGGGTCGAAG
ACATTCTTGCTGCCCGTGCCGTCGAGGCAGCTGATAAAGCCCTGACGAAC
TGGGAGATGCAAGTCCTCGAGTTTTGTCGTCCCCCTGAAGTAGCAACCAT
CAAAAGGGTTTTGGAGCGTGTGGCTGACTTAGCCATCACGCCCGACGGCG
GATTCCCTCAAGCAGAGCGCCAACGTGTGTTTTTCGCCCGGACAGTTGAC
TACGAGCTCGACCAGGAGCAAGAACGCCGGGAGAGAGAAGCATACTTCAC
CTCGGTGTCGGTGGAGGGCAATTTCATTTTTGACAAGGCGAGCCATAGGG
ATTTCTTGGGGGCTTTGTTGGGGACGGGGATAACAAGGGAGAAG back to top
|