jgi.p|Nanoce1779_2|596829, mRNA_6934 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596829
Unique NamemRNA_6934
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1571
Alignment locationscaffold_17:464370..465940 -

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Properties
Property NameValue
TranscriptId596915
TrackFilteredModels2
ProteinId596829
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:464370..465940 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596829gene_6934Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596829mRNA_6934-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6934CDS_6934Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6934 ID=mRNA_6934|Name=jgi.p|Nanoce1779_2|596829|organism=Nannochloropsis oceanica|type=mRNA|length=1571bp
GTTGGAGTTGTTGGTGTGCGCGGAGGCGAAAAAGGTGGACTTGTTGAGGG
CGGGAGGGAGGGAGGGAGGAAGTGGGATGGTGGATGTGATGTATTGTTTT
GCGATAAACGACTTCAGGAACGCCACTGGATTCATGGCCAGAGAACTTCC
CGAGGTTTTCGCCGCTGCCATTGCTGGTACTACTACTTCTGCGGCTGATG
CTGCTTCTGCCGCTTGGAACAGTGGGGGTGAGTGGTCCGCGACAGATTTC
ACAAAGTTGTTGTGGGCGTGTGTATCTTTGATGGAAAAAGGAGGAGTAGG
GAGAGATGGTGGAGGAGGTGGAGCAGGAGCTGGAGCCGGAGGAGGTAAAG
AACAACAGTTCCTGCAGCAGCAACATCTGCTCAGCGCCTTGGCGGGAAGG
ACGTGTGTCCGCGTTCTTGAGACCCTTTCACCCTCCTCCTCCTGCTCCCT
CCCTCCCTCCCTCCTCGTTCAGCTTGCCTGGTCTCTGGCTACTCTCGGCC
ATTACGACCCCGATCTGTTTACAGTCCTCTCCCACTCCGTCCTTCCTGTC
CACCTTCCCTCCCTCTCCCTGTCGGAGATGGCTTCCCTGTCCTGGTCGTT
TGCATCCATAGGGCATCATGTCCAAAGCCGATTTTTCGACCGCGTGGTGA
TGGTGCTGGAGCAGCAACACGCCCATTTCAGCCTGAAAGATTTGGCGATG
TGTTTGTGGGCTGTTGCCTTGACGGGTTATGAATGCTTGGGGGTGTTTGC
GGGGGACAGGAAGGAAGGAGGGATGGAGGAATGGCAAGGGGGCTGGGTGA
AGGAGAAGGAGGAAGAGTTGAGGGCCATGAGACCGAGTGAGGTGGTGAAA
TTCTTTTGGGCGTTGGCGAAGCTGTTGCCGCGTCAAAATAACATGATTTC
TGAGGAAGGGAAGAAAGGGACGTTGACTCTGAGGGAGGAGTTGCTGAATG
CGATCTGTCAAGATCTGAGGACTAAGCTTGCGACGTTTTCACCACAGGAT
TTAGTGATGACTACGTGGGCATTGGCGCGTTTGTACGGCCCTATAGGCCC
TTCTGACTCGGCCCTCGCCCCTACGTCTTCAACGAAGAAGCTTTTATCGC
ATTTATGCAAGCAGCTGCCTGCAAGATTGCCTTTTTTTACGGCAACAGAG
CTTGCGAGTCTGCTACTATCTCTGGGCACTCTCCACCAGCCCCGAGACAC
GCTTTGGAACTTATTCAAAAAGGAGGTGGAGCGACGGTTGAAAATGCTGT
TGGATTCAGAAGAAGTGGGGATAAGTGGAGGAGGGGAAAGGGGAAGGAAT
GAAGAAGGAGAGGTGGATGGCTTTTTCCATTTGGCACGGTGTCAGGCGGC
GTTGTCGGTGTGGAAAGGTACGGATGGAGATGGTGGTGGGATATGTTAAT
GGATGGACAGCAGAGTAGACAGCAACTGGCCAAATCTCAGGCATAGATGT
ATAAGAGCACCGGGAATGGTGAGCGTGGGATGGGGGAATGAAGGGTTGGA
AAAGGAGGGGAGGGAAGGAATCCATGTAAATACTCAATAAAAAGCAGAAT
GAAAGCAACAATGTAATGGAT
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protein sequence of jgi.p|Nanoce1779_2|596829

>mRNA_6934-protein ID=mRNA_6934-protein|Name=jgi.p|Nanoce1779_2|596829|organism=Nannochloropsis oceanica|type=polypeptide|length=441bp
MVDVMYCFAINDFRNATGFMARELPEVFAAAIAGTTTSAADAASAAWNSG
GEWSATDFTKLLWACVSLMEKGGVGRDGGGGGAGAGAGGGKEQQFLQQQH
LLSALAGRTCVRVLETLSPSSSCSLPPSLLVQLAWSLATLGHYDPDLFTV
LSHSVLPVHLPSLSLSEMASLSWSFASIGHHVQSRFFDRVVMVLEQQHAH
FSLKDLAMCLWAVALTGYECLGVFAGDRKEGGMEEWQGGWVKEKEEELRA
MRPSEVVKFFWALAKLLPRQNNMISEEGKKGTLTLREELLNAICQDLRTK
LATFSPQDLVMTTWALARLYGPIGPSDSALAPTSSTKKLLSHLCKQLPAR
LPFFTATELASLLLSLGTLHQPRDTLWNLFKKEVERRLKMLLDSEEVGIS
GGGERGRNEEGEVDGFFHLARCQAALSVWKGTDGDGGGIC*
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mRNA from alignment at scaffold_17:464370..465940-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6934 ID=mRNA_6934|Name=jgi.p|Nanoce1779_2|596829|organism=Nannochloropsis oceanica|type=mRNA|length=1571bp|location=Sequence derived from alignment at scaffold_17:464370..465940- (Nannochloropsis oceanica)
GTTGGAGTTGTTGGTGTGCGCGGAGGCGAAAAAGGTGGACTTGTTGAGGG
CGGGAGGGAGGGAGGGAGGAAGTGGGATGGTGGATGTGATGTATTGTTTT
GCGATAAACGACTTCAGGAACGCCACTGGATTCATGGCCAGAGAACTTCC
CGAGGTTTTCGCCGCTGCCATTGCTGGTACTACTACTTCTGCGGCTGATG
CTGCTTCTGCCGCTTGGAACAGTGGGGGTGAGTGGTCCGCGACAGATTTC
ACAAAGTTGTTGTGGGCGTGTGTATCTTTGATGGAAAAAGGAGGAGTAGG
GAGAGATGGTGGAGGAGGTGGAGCAGGAGCTGGAGCCGGAGGAGGTAAAG
AACAACAGTTCCTGCAGCAGCAACATCTGCTCAGCGCCTTGGCGGGAAGG
ACGTGTGTCCGCGTTCTTGAGACCCTTTCACCCTCCTCCTCCTGCTCCCT
CCCTCCCTCCCTCCTCGTTCAGCTTGCCTGGTCTCTGGCTACTCTCGGCC
ATTACGACCCCGATCTGTTTACAGTCCTCTCCCACTCCGTCCTTCCTGTC
CACCTTCCCTCCCTCTCCCTGTCGGAGATGGCTTCCCTGTCCTGGTCGTT
TGCATCCATAGGGCATCATGTCCAAAGCCGATTTTTCGACCGCGTGGTGA
TGGTGCTGGAGCAGCAACACGCCCATTTCAGCCTGAAAGATTTGGCGATG
TGTTTGTGGGCTGTTGCCTTGACGGGTTATGAATGCTTGGGGGTGTTTGC
GGGGGACAGGAAGGAAGGAGGGATGGAGGAATGGCAAGGGGGCTGGGTGA
AGGAGAAGGAGGAAGAGTTGAGGGCCATGAGACCGAGTGAGGTGGTGAAA
TTCTTTTGGGCGTTGGCGAAGCTGTTGCCGCGTCAAAATAACATGATTTC
TGAGGAAGGGAAGAAAGGGACGTTGACTCTGAGGGAGGAGTTGCTGAATG
CGATCTGTCAAGATCTGAGGACTAAGCTTGCGACGTTTTCACCACAGGAT
TTAGTGATGACTACGTGGGCATTGGCGCGTTTGTACGGCCCTATAGGCCC
TTCTGACTCGGCCCTCGCCCCTACGTCTTCAACGAAGAAGCTTTTATCGC
ATTTATGCAAGCAGCTGCCTGCAAGATTGCCTTTTTTTACGGCAACAGAG
CTTGCGAGTCTGCTACTATCTCTGGGCACTCTCCACCAGCCCCGAGACAC
GCTTTGGAACTTATTCAAAAAGGAGGTGGAGCGACGGTTGAAAATGCTGT
TGGATTCAGAAGAAGTGGGGATAAGTGGAGGAGGGGAAAGGGGAAGGAAT
GAAGAAGGAGAGGTGGATGGCTTTTTCCATTTGGCACGGTGTCAGGCGGC
GTTGTCGGTGTGGAAAGGTACGGATGGAGATGGTGGTGGGATATGTTAAT
GGATGGACAGCAGAGTAGACAGCAACTGGCCAAATCTCAGGCATAGATGT
ATAAGAGCACCGGGAATGGTGAGCGTGGGATGGGGGAATGAAGGGTTGGA
AAAGGAGGGGAGGGAAGGAATCCATGTAAATACTCAATAAAAAGCAGAAT
GAAAGCAACAATGTAATGGAT
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Coding sequence (CDS) from alignment at scaffold_17:464370..465940-

>mRNA_6934 ID=mRNA_6934|Name=jgi.p|Nanoce1779_2|596829|organism=Nannochloropsis oceanica|type=CDS|length=1323bp|location=Sequence derived from alignment at scaffold_17:464370..465940- (Nannochloropsis oceanica)
ATGGTGGATGTGATGTATTGTTTTGCGATAAACGACTTCAGGAACGCCAC
TGGATTCATGGCCAGAGAACTTCCCGAGGTTTTCGCCGCTGCCATTGCTG
GTACTACTACTTCTGCGGCTGATGCTGCTTCTGCCGCTTGGAACAGTGGG
GGTGAGTGGTCCGCGACAGATTTCACAAAGTTGTTGTGGGCGTGTGTATC
TTTGATGGAAAAAGGAGGAGTAGGGAGAGATGGTGGAGGAGGTGGAGCAG
GAGCTGGAGCCGGAGGAGGTAAAGAACAACAGTTCCTGCAGCAGCAACAT
CTGCTCAGCGCCTTGGCGGGAAGGACGTGTGTCCGCGTTCTTGAGACCCT
TTCACCCTCCTCCTCCTGCTCCCTCCCTCCCTCCCTCCTCGTTCAGCTTG
CCTGGTCTCTGGCTACTCTCGGCCATTACGACCCCGATCTGTTTACAGTC
CTCTCCCACTCCGTCCTTCCTGTCCACCTTCCCTCCCTCTCCCTGTCGGA
GATGGCTTCCCTGTCCTGGTCGTTTGCATCCATAGGGCATCATGTCCAAA
GCCGATTTTTCGACCGCGTGGTGATGGTGCTGGAGCAGCAACACGCCCAT
TTCAGCCTGAAAGATTTGGCGATGTGTTTGTGGGCTGTTGCCTTGACGGG
TTATGAATGCTTGGGGGTGTTTGCGGGGGACAGGAAGGAAGGAGGGATGG
AGGAATGGCAAGGGGGCTGGGTGAAGGAGAAGGAGGAAGAGTTGAGGGCC
ATGAGACCGAGTGAGGTGGTGAAATTCTTTTGGGCGTTGGCGAAGCTGTT
GCCGCGTCAAAATAACATGATTTCTGAGGAAGGGAAGAAAGGGACGTTGA
CTCTGAGGGAGGAGTTGCTGAATGCGATCTGTCAAGATCTGAGGACTAAG
CTTGCGACGTTTTCACCACAGGATTTAGTGATGACTACGTGGGCATTGGC
GCGTTTGTACGGCCCTATAGGCCCTTCTGACTCGGCCCTCGCCCCTACGT
CTTCAACGAAGAAGCTTTTATCGCATTTATGCAAGCAGCTGCCTGCAAGA
TTGCCTTTTTTTACGGCAACAGAGCTTGCGAGTCTGCTACTATCTCTGGG
CACTCTCCACCAGCCCCGAGACACGCTTTGGAACTTATTCAAAAAGGAGG
TGGAGCGACGGTTGAAAATGCTGTTGGATTCAGAAGAAGTGGGGATAAGT
GGAGGAGGGGAAAGGGGAAGGAATGAAGAAGGAGAGGTGGATGGCTTTTT
CCATTTGGCACGGTGTCAGGCGGCGTTGTCGGTGTGGAAAGGTACGGATG
GAGATGGTGGTGGGATATGTTAA
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Synonyms
Publications