jgi.p|Nanoce1779_2|596827, mRNA_6932 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596827
Unique NamemRNA_6932
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1010
Alignment locationscaffold_17:462638..463647 -

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Properties
Property NameValue
TranscriptId596913
TrackFilteredModels2
ProteinId596827
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:462638..463647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596827gene_6932Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596827mRNA_6932-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6932CDS_6932Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6932 ID=mRNA_6932|Name=jgi.p|Nanoce1779_2|596827|organism=Nannochloropsis oceanica|type=mRNA|length=1010bp
AGAATCGAAGATGATAGGACGACGCTCCCTTCTTTTCGTGGCTGCCGCGG
CCTTGTGCGCGGGCCTCTGCGCCGCGTTTGTTCCTGGGGCTCCCTTGCCC
AGTAGCGCCATCTCCGTCACCAGCACCATCAGACGCGAGACCATCGTGGT
ACGTAGACAGGCATATCGCAAGAAGAGATAGCACACGAGGGCTAGAAGAG
GAAGGGGTGGGGTCGGTTGGGCTGGGTGGGCGCATTAATTACTGTTGTAG
ATCATCATTCGTGAGAGGTGCCTTGGATTGCAGAAATTACCCCCTAAATG
CCGCATTCCATTTCCTACTCTCTCCCTAATACTCGACTTGTAGCCTTCCA
TTTCTCGATAACACCGTCCCTTCCTTCTCCTTTTCTTAGATGGGCAATCA
CCGTTCCTCCCAAGCCGCCCGCCGTCGGACCTCCTTCCTGAAGCACGTCA
AGGCTCCCCTACACACCCGCCGCACCATCATGAGCTCCCCCTTAAGCAAG
GAGCTGCGTGCTGAGCATGGGGGCGTGAGATCCATTCCGGTGCGCACAGG
GGACGAGGTGGTGGTGACGGCAGGCGATCACAGGAAGAAAGTGGGGAAGG
TCATTGGAGTAGACCGCAAGAAGTACTACATCCACGTGGAGGGAATCACG
CGCGAGAAATCGGGGGCGAAGGAGGCAGGGAAGACGAGCACCACCATTCC
GGTGCCCATCCGTGCGTCGAGCGTGAAGATCACCAAGCTGTATCTCGATG
CGAGCCGTGAGGCGATCTTGAAGCGGAAGGCCGCGGGGAGGGCAGAGCTG
GCGGCGCGCAAGAATAGTCTCAAGATTGCGGAGCCAGGGCAAGATCCGGC
TTGGACGGAATATCAGACCACCCTGACATCTATTTTGGACGGGTCGGCAT
AAGCTATATAAGAGGAGGAGGGAGGGAGGGGAGGAGGGAGTGGAGGAGTG
GGACGACCTACACAAAAATCATCTCTCATACGTTTTAAATATACACTGTG
ATGAGAGGGA
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protein sequence of jgi.p|Nanoce1779_2|596827

>mRNA_6932-protein ID=mRNA_6932-protein|Name=jgi.p|Nanoce1779_2|596827|organism=Nannochloropsis oceanica|type=polypeptide|length=171bp
MGNHRSSQAARRRTSFLKHVKAPLHTRRTIMSSPLSKELRAEHGGVRSIP
VRTGDEVVVTAGDHRKKVGKVIGVDRKKYYIHVEGITREKSGAKEAGKTS
TTIPVPIRASSVKITKLYLDASREAILKRKAAGRAELAARKNSLKIAEPG
QDPAWTEYQTTLTSILDGSA*
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mRNA from alignment at scaffold_17:462638..463647-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6932 ID=mRNA_6932|Name=jgi.p|Nanoce1779_2|596827|organism=Nannochloropsis oceanica|type=mRNA|length=1010bp|location=Sequence derived from alignment at scaffold_17:462638..463647- (Nannochloropsis oceanica)
AGAATCGAAGATGATAGGACGACGCTCCCTTCTTTTCGTGGCTGCCGCGG
CCTTGTGCGCGGGCCTCTGCGCCGCGTTTGTTCCTGGGGCTCCCTTGCCC
AGTAGCGCCATCTCCGTCACCAGCACCATCAGACGCGAGACCATCGTGGT
ACGTAGACAGGCATATCGCAAGAAGAGATAGCACACGAGGGCTAGAAGAG
GAAGGGGTGGGGTCGGTTGGGCTGGGTGGGCGCATTAATTACTGTTGTAG
ATCATCATTCGTGAGAGGTGCCTTGGATTGCAGAAATTACCCCCTAAATG
CCGCATTCCATTTCCTACTCTCTCCCTAATACTCGACTTGTAGCCTTCCA
TTTCTCGATAACACCGTCCCTTCCTTCTCCTTTTCTTAGATGGGCAATCA
CCGTTCCTCCCAAGCCGCCCGCCGTCGGACCTCCTTCCTGAAGCACGTCA
AGGCTCCCCTACACACCCGCCGCACCATCATGAGCTCCCCCTTAAGCAAG
GAGCTGCGTGCTGAGCATGGGGGCGTGAGATCCATTCCGGTGCGCACAGG
GGACGAGGTGGTGGTGACGGCAGGCGATCACAGGAAGAAAGTGGGGAAGG
TCATTGGAGTAGACCGCAAGAAGTACTACATCCACGTGGAGGGAATCACG
CGCGAGAAATCGGGGGCGAAGGAGGCAGGGAAGACGAGCACCACCATTCC
GGTGCCCATCCGTGCGTCGAGCGTGAAGATCACCAAGCTGTATCTCGATG
CGAGCCGTGAGGCGATCTTGAAGCGGAAGGCCGCGGGGAGGGCAGAGCTG
GCGGCGCGCAAGAATAGTCTCAAGATTGCGGAGCCAGGGCAAGATCCGGC
TTGGACGGAATATCAGACCACCCTGACATCTATTTTGGACGGGTCGGCAT
AAGCTATATAAGAGGAGGAGGGAGGGAGGGGAGGAGGGAGTGGAGGAGTG
GGACGACCTACACAAAAATCATCTCTCATACGTTTTAAATATACACTGTG
ATGAGAGGGA
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Coding sequence (CDS) from alignment at scaffold_17:462638..463647-

>mRNA_6932 ID=mRNA_6932|Name=jgi.p|Nanoce1779_2|596827|organism=Nannochloropsis oceanica|type=CDS|length=513bp|location=Sequence derived from alignment at scaffold_17:462638..463647- (Nannochloropsis oceanica)
ATGGGCAATCACCGTTCCTCCCAAGCCGCCCGCCGTCGGACCTCCTTCCT
GAAGCACGTCAAGGCTCCCCTACACACCCGCCGCACCATCATGAGCTCCC
CCTTAAGCAAGGAGCTGCGTGCTGAGCATGGGGGCGTGAGATCCATTCCG
GTGCGCACAGGGGACGAGGTGGTGGTGACGGCAGGCGATCACAGGAAGAA
AGTGGGGAAGGTCATTGGAGTAGACCGCAAGAAGTACTACATCCACGTGG
AGGGAATCACGCGCGAGAAATCGGGGGCGAAGGAGGCAGGGAAGACGAGC
ACCACCATTCCGGTGCCCATCCGTGCGTCGAGCGTGAAGATCACCAAGCT
GTATCTCGATGCGAGCCGTGAGGCGATCTTGAAGCGGAAGGCCGCGGGGA
GGGCAGAGCTGGCGGCGCGCAAGAATAGTCTCAAGATTGCGGAGCCAGGG
CAAGATCCGGCTTGGACGGAATATCAGACCACCCTGACATCTATTTTGGA
CGGGTCGGCATAA
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Synonyms
Publications