jgi.p|Nanoce1779_2|631891, mRNA_6930 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|631891
Unique NamemRNA_6930
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1344
Alignment locationscaffold_17:455612..456955 -

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Properties
Property NameValue
TranscriptId631977
TrackFilteredModels2
ProteinId631891
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:455612..456955 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631891gene_6930Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6930CDS_6930Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|631891mRNA_6930-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6930 ID=mRNA_6930|Name=jgi.p|Nanoce1779_2|631891|organism=Nannochloropsis oceanica|type=mRNA|length=1344bp
GAAATCGTGAGTAATGTGTATGATAAAAGGGGGGAGGGAGGGAGGGAGGC
ATGGAAGAAGGCCCTTGTCATCATCTCTACCTTACGCCCCTTCCAACTTC
CTTGTTGCTGTGCTTCATGACCAAAGCACGAGAAGATTCTTCTCCGGTTC
CCGGCCTCGGATTGCCCTGGTGCCATGCTCCTTGTTCCGTGGCATCAGTC
AAGCGTTTGGAGGCCATAGGTTTGGAAATGCAGCATGTCTTTGGCTCGTT
GGATTTCAAGCACCCTATCAAGCCACATGCGGGATTGACGCCTGCCTCTG
GCTGCTGCACCGTATTCTCTGAACCCCCCCCAAAAAAAGCAACAACCTTT
TTGACCTCTAACTGAGCCTTGCTCCCATGCAACAGATTCACCTATGCCAG
AAGACACGTCCCGCAAGACCAATGCATTAGAAGAAGAAGAGCTGGCCATC
GAGATAAACGAAAACAACCATGGTGCGACGCCCACAGCTCCCCAGGCCGC
AGGGTCATGTTCTGTAGCGTCCACCAACACAACCTCACCGGGGAGTGCTC
CCGGTACTGGTGGTGTTGCTGCTGCTCCTCCTACAGGCACTGCCACCACA
AGCGGCAGCAAGAGTAGCACCACTGCGTTCGATGGTATTGACAACAAGAA
TGACCAGGGAGCGACCACAATCAATTTCCCCACCACCCTTCCCCCCCCTC
CTCCCCCGCCCCTCGGCGTTGTTTCCACCGCCCTCCCTCACCGGCACTCC
ATGCGCTACTTGCTTTACCCACACTACAAGCCTCGGCCTCTGCGTCTCCC
TGTTGATATTGATGCCTTACTTCTTGTGGTCGGTGCTCTCGTAGTGCCCA
ATCCGAAAGGGTTTATCGTCACAGATGAGACGCTGGTGCACGGCCACTCC
CTCTGGCGTTTCCTTGTCCGGTTGTTTGGGTCCTCGTGCCTGGGAAGATC
AGAGGCAAATGAGAGTGGGACGTGGCGGAGTCTGACCAGGGCGTTGTCTC
AATGGGGGGACAAGAAGCCGGAAAGGCTTGACGCTCTGTTGGGGGCGACT
AGGTGGGAAAGGGAATGTCGGACAAGCGAGTACTTTATGCGCTTGCCTCG
GGGAGACCTGGGGGAACCGATTGCAGTAAAGGGGACCTTTATCGTGGGAA
TTTCATTGAAGAATCCGTTAAGCGACCCTTCATTTCACCCTCAGTTCCAA
GCAGCGTTAAATGCAGTGGCTCCGGGATTAAGCCCAGCGAGGTACATGAT
GATTGTCGAGCAGTATCTGTCGACGGTGTGGATGAGTCATGAAGCCCTCG
ATATCGAGAGGGCGATTTGTGTGCACAATCGTCTGGCGGGGGGG
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protein sequence of jgi.p|Nanoce1779_2|631891

>mRNA_6930-protein ID=mRNA_6930-protein|Name=jgi.p|Nanoce1779_2|631891|organism=Nannochloropsis oceanica|type=polypeptide|length=317bp
MPEDTSRKTNALEEEELAIEINENNHGATPTAPQAAGSCSVASTNTTSPG
SAPGTGGVAAAPPTGTATTSGSKSSTTAFDGIDNKNDQGATTINFPTTLP
PPPPPPLGVVSTALPHRHSMRYLLYPHYKPRPLRLPVDIDALLLVVGALV
VPNPKGFIVTDETLVHGHSLWRFLVRLFGSSCLGRSEANESGTWRSLTRA
LSQWGDKKPERLDALLGATRWERECRTSEYFMRLPRGDLGEPIAVKGTFI
VGISLKNPLSDPSFHPQFQAALNAVAPGLSPARYMMIVEQYLSTVWMSHE
ALDIERAICVHNRLAGG
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mRNA from alignment at scaffold_17:455612..456955-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6930 ID=mRNA_6930|Name=jgi.p|Nanoce1779_2|631891|organism=Nannochloropsis oceanica|type=mRNA|length=1344bp|location=Sequence derived from alignment at scaffold_17:455612..456955- (Nannochloropsis oceanica)
GAAATCGTGAGTAATGTGTATGATAAAAGGGGGGAGGGAGGGAGGGAGGC
ATGGAAGAAGGCCCTTGTCATCATCTCTACCTTACGCCCCTTCCAACTTC
CTTGTTGCTGTGCTTCATGACCAAAGCACGAGAAGATTCTTCTCCGGTTC
CCGGCCTCGGATTGCCCTGGTGCCATGCTCCTTGTTCCGTGGCATCAGTC
AAGCGTTTGGAGGCCATAGGTTTGGAAATGCAGCATGTCTTTGGCTCGTT
GGATTTCAAGCACCCTATCAAGCCACATGCGGGATTGACGCCTGCCTCTG
GCTGCTGCACCGTATTCTCTGAACCCCCCCCAAAAAAAGCAACAACCTTT
TTGACCTCTAACTGAGCCTTGCTCCCATGCAACAGATTCACCTATGCCAG
AAGACACGTCCCGCAAGACCAATGCATTAGAAGAAGAAGAGCTGGCCATC
GAGATAAACGAAAACAACCATGGTGCGACGCCCACAGCTCCCCAGGCCGC
AGGGTCATGTTCTGTAGCGTCCACCAACACAACCTCACCGGGGAGTGCTC
CCGGTACTGGTGGTGTTGCTGCTGCTCCTCCTACAGGCACTGCCACCACA
AGCGGCAGCAAGAGTAGCACCACTGCGTTCGATGGTATTGACAACAAGAA
TGACCAGGGAGCGACCACAATCAATTTCCCCACCACCCTTCCCCCCCCTC
CTCCCCCGCCCCTCGGCGTTGTTTCCACCGCCCTCCCTCACCGGCACTCC
ATGCGCTACTTGCTTTACCCACACTACAAGCCTCGGCCTCTGCGTCTCCC
TGTTGATATTGATGCCTTACTTCTTGTGGTCGGTGCTCTCGTAGTGCCCA
ATCCGAAAGGGTTTATCGTCACAGATGAGACGCTGGTGCACGGCCACTCC
CTCTGGCGTTTCCTTGTCCGGTTGTTTGGGTCCTCGTGCCTGGGAAGATC
AGAGGCAAATGAGAGTGGGACGTGGCGGAGTCTGACCAGGGCGTTGTCTC
AATGGGGGGACAAGAAGCCGGAAAGGCTTGACGCTCTGTTGGGGGCGACT
AGGTGGGAAAGGGAATGTCGGACAAGCGAGTACTTTATGCGCTTGCCTCG
GGGAGACCTGGGGGAACCGATTGCAGTAAAGGGGACCTTTATCGTGGGAA
TTTCATTGAAGAATCCGTTAAGCGACCCTTCATTTCACCCTCAGTTCCAA
GCAGCGTTAAATGCAGTGGCTCCGGGATTAAGCCCAGCGAGGTACATGAT
GATTGTCGAGCAGTATCTGTCGACGGTGTGGATGAGTCATGAAGCCCTCG
ATATCGAGAGGGCGATTTGTGTGCACAATCGTCTGGCGGGGGGG
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Coding sequence (CDS) from alignment at scaffold_17:455612..456955-

>mRNA_6930 ID=mRNA_6930|Name=jgi.p|Nanoce1779_2|631891|organism=Nannochloropsis oceanica|type=CDS|length=951bp|location=Sequence derived from alignment at scaffold_17:455612..456955- (Nannochloropsis oceanica)
ATGCCAGAAGACACGTCCCGCAAGACCAATGCATTAGAAGAAGAAGAGCT
GGCCATCGAGATAAACGAAAACAACCATGGTGCGACGCCCACAGCTCCCC
AGGCCGCAGGGTCATGTTCTGTAGCGTCCACCAACACAACCTCACCGGGG
AGTGCTCCCGGTACTGGTGGTGTTGCTGCTGCTCCTCCTACAGGCACTGC
CACCACAAGCGGCAGCAAGAGTAGCACCACTGCGTTCGATGGTATTGACA
ACAAGAATGACCAGGGAGCGACCACAATCAATTTCCCCACCACCCTTCCC
CCCCCTCCTCCCCCGCCCCTCGGCGTTGTTTCCACCGCCCTCCCTCACCG
GCACTCCATGCGCTACTTGCTTTACCCACACTACAAGCCTCGGCCTCTGC
GTCTCCCTGTTGATATTGATGCCTTACTTCTTGTGGTCGGTGCTCTCGTA
GTGCCCAATCCGAAAGGGTTTATCGTCACAGATGAGACGCTGGTGCACGG
CCACTCCCTCTGGCGTTTCCTTGTCCGGTTGTTTGGGTCCTCGTGCCTGG
GAAGATCAGAGGCAAATGAGAGTGGGACGTGGCGGAGTCTGACCAGGGCG
TTGTCTCAATGGGGGGACAAGAAGCCGGAAAGGCTTGACGCTCTGTTGGG
GGCGACTAGGTGGGAAAGGGAATGTCGGACAAGCGAGTACTTTATGCGCT
TGCCTCGGGGAGACCTGGGGGAACCGATTGCAGTAAAGGGGACCTTTATC
GTGGGAATTTCATTGAAGAATCCGTTAAGCGACCCTTCATTTCACCCTCA
GTTCCAAGCAGCGTTAAATGCAGTGGCTCCGGGATTAAGCCCAGCGAGGT
ACATGATGATTGTCGAGCAGTATCTGTCGACGGTGTGGATGAGTCATGAA
GCCCTCGATATCGAGAGGGCGATTTGTGTGCACAATCGTCTGGCGGGGGG
G
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Synonyms
Publications