jgi.p|Nanoce1779_2|573816, mRNA_693 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573816
Unique NamemRNA_693
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1390
Alignment locationscaffold_2:207835..209224 +

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Properties
Property NameValue
TranscriptId573902
TrackFilteredModels2
ProteinId573816
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:207835..209224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573816gene_693Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573816mRNA_693-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_693CDS_693Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_693 ID=mRNA_693|Name=jgi.p|Nanoce1779_2|573816|organism=Nannochloropsis oceanica|type=mRNA|length=1390bp
TTGTTATTGCTTTTGGCTTTCGCGGCACCATTTCTGCAGCGGTTATCATG
CTTGCTTTCTTCTCAGCCTCGGTCGCCGCCGCAGGCGAGCTGGTGACTAA
GGGCACGACCTGGCCTCTCGTCGCCGCGGCCTCGACTTTCTCCACCTCTG
CGGAAGTGATCTCCTGTAAGGCGTCGCGTAGATACATCACCTCGGCCAAG
TATTCATCACGCTCTGATGTCAATTCAACCAGGATTTTGGCCCTGGGGGA
GCGCATCTTCTCTTTTAAGCTTGTCACGGTGGAGCGCAAGGTCACCAGCT
CCTGCTGTAAGGACTTGATAGCCGTGCTCCTTTCCTGGTGCTGCCTAATC
TTGTGGACTTCCTGCCGAAGGGGCGTTGAGATGAGTGCTGCTGGCTTCTT
ATTATTTGTGAGTAGGACCTCAATGTGTCTGTCGCGCCGTTTCACTTCGG
CTTCCAGGCGTTGGGTCTTGGTTTGGAGGAGCAGGGTTTTTTCCCTGCTT
TGTCGCAGTCCAAGCTTGAGCCGACGATTTTCGTGGCGTAAACTTTCAAA
GTCGTGAATATAGGGATTTTTTGATTCCGATGCCGCGGAGATGTAAGATG
GGATGGTGAAGGGTTTCCGCTTCGCAATCGCATGGGCGATAGTGTGAGCT
GCATGTTTGGCAGGACTAAACGGACTCAAGGGCAGATGCTGGGTGCTGGG
CCGGTAAGGCGATGAGAATGGCTGCATGATCTTGCTCTGAAGGGAATGCA
CCTTCAATAAATTTTGAGTTGCTCAGAAATTGATCTTAAGAAGGAGATAT
GAGGGCTCAATGAACTGACTAGTAAGACCATTCTACTTGAATTTTGCCTT
CATTTTGGCAAAAAAATCGAGGGGTGAAGGGGGCAGTACTGCAGGACCAC
AACGTCAAGGATTTGCTATCCTTTCGCTTTCATCTCGATGACTGCGGGTA
AGCTGTGCCACCAGCGAAAAAAAGTGTATGGCGTGACCATCAAAAGAAGA
CAAAAATTGGATGATGGGCCAGCCGTTGAGGGGCAGGACGTTTTGCGTTA
TTAGAAAATTATCGATCGCGCAAAAGAAGGCAACACCGAATCGCGTTGGT
CCAGTCTTGATTCAACTGTCGTCACTGTGGGGTGTTTCTATCATTCAAAG
CGCTGCTTGGGCAGCATGCGCATGCACCTACCACCCGCGCCCACATGTTG
CCGGCATATTTTGACGTTCGCGCTGGCAACGGATGTCACGTTTTCGCATC
GATTAATCCACAACCCGATTTTCTGCGAGGATGTAGATAAGCAACACCAC
GAATTTAAGACGCCTGTCGGTTTCGACTATGACGACTGGATTGGCTGGGC
TGCCGAACTACTGTGTCGCTTTGCGACAGAGCAAGGAGAT
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protein sequence of jgi.p|Nanoce1779_2|573816

>mRNA_693-protein ID=mRNA_693-protein|Name=jgi.p|Nanoce1779_2|573816|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp
MLAFFSASVAAAGELVTKGTTWPLVAAASTFSTSAEVISCKASRRYITSA
KYSSRSDVNSTRILALGERIFSFKLVTVERKVTSSCCKDLIAVLLSWCCL
ILWTSCRRGVEMSAAGFLLFVSRTSMCLSRRFTSASRRWVLVWRSRVFSL
LCRSPSLSRRFSWRKLSKS*
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mRNA from alignment at scaffold_2:207835..209224+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_693 ID=mRNA_693|Name=jgi.p|Nanoce1779_2|573816|organism=Nannochloropsis oceanica|type=mRNA|length=1390bp|location=Sequence derived from alignment at scaffold_2:207835..209224+ (Nannochloropsis oceanica)
TTGTTATTGCTTTTGGCTTTCGCGGCACCATTTCTGCAGCGGTTATCATG
CTTGCTTTCTTCTCAGCCTCGGTCGCCGCCGCAGGCGAGCTGGTGACTAA
GGGCACGACCTGGCCTCTCGTCGCCGCGGCCTCGACTTTCTCCACCTCTG
CGGAAGTGATCTCCTGTAAGGCGTCGCGTAGATACATCACCTCGGCCAAG
TATTCATCACGCTCTGATGTCAATTCAACCAGGATTTTGGCCCTGGGGGA
GCGCATCTTCTCTTTTAAGCTTGTCACGGTGGAGCGCAAGGTCACCAGCT
CCTGCTGTAAGGACTTGATAGCCGTGCTCCTTTCCTGGTGCTGCCTAATC
TTGTGGACTTCCTGCCGAAGGGGCGTTGAGATGAGTGCTGCTGGCTTCTT
ATTATTTGTGAGTAGGACCTCAATGTGTCTGTCGCGCCGTTTCACTTCGG
CTTCCAGGCGTTGGGTCTTGGTTTGGAGGAGCAGGGTTTTTTCCCTGCTT
TGTCGCAGTCCAAGCTTGAGCCGACGATTTTCGTGGCGTAAACTTTCAAA
GTCGTGAATATAGGGATTTTTTGATTCCGATGCCGCGGAGATGTAAGATG
GGATGGTGAAGGGTTTCCGCTTCGCAATCGCATGGGCGATAGTGTGAGCT
GCATGTTTGGCAGGACTAAACGGACTCAAGGGCAGATGCTGGGTGCTGGG
CCGGTAAGGCGATGAGAATGGCTGCATGATCTTGCTCTGAAGGGAATGCA
CCTTCAATAAATTTTGAGTTGCTCAGAAATTGATCTTAAGAAGGAGATAT
GAGGGCTCAATGAACTGACTAGTAAGACCATTCTACTTGAATTTTGCCTT
CATTTTGGCAAAAAAATCGAGGGGTGAAGGGGGCAGTACTGCAGGACCAC
AACGTCAAGGATTTGCTATCCTTTCGCTTTCATCTCGATGACTGCGGGTA
AGCTGTGCCACCAGCGAAAAAAAGTGTATGGCGTGACCATCAAAAGAAGA
CAAAAATTGGATGATGGGCCAGCCGTTGAGGGGCAGGACGTTTTGCGTTA
TTAGAAAATTATCGATCGCGCAAAAGAAGGCAACACCGAATCGCGTTGGT
CCAGTCTTGATTCAACTGTCGTCACTGTGGGGTGTTTCTATCATTCAAAG
CGCTGCTTGGGCAGCATGCGCATGCACCTACCACCCGCGCCCACATGTTG
CCGGCATATTTTGACGTTCGCGCTGGCAACGGATGTCACGTTTTCGCATC
GATTAATCCACAACCCGATTTTCTGCGAGGATGTAGATAAGCAACACCAC
GAATTTAAGACGCCTGTCGGTTTCGACTATGACGACTGGATTGGCTGGGC
TGCCGAACTACTGTGTCGCTTTGCGACAGAGCAAGGAGAT
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Coding sequence (CDS) from alignment at scaffold_2:207835..209224+

>mRNA_693 ID=mRNA_693|Name=jgi.p|Nanoce1779_2|573816|organism=Nannochloropsis oceanica|type=CDS|length=510bp|location=Sequence derived from alignment at scaffold_2:207835..209224+ (Nannochloropsis oceanica)
ATGCTTGCTTTCTTCTCAGCCTCGGTCGCCGCCGCAGGCGAGCTGGTGAC
TAAGGGCACGACCTGGCCTCTCGTCGCCGCGGCCTCGACTTTCTCCACCT
CTGCGGAAGTGATCTCCTGTAAGGCGTCGCGTAGATACATCACCTCGGCC
AAGTATTCATCACGCTCTGATGTCAATTCAACCAGGATTTTGGCCCTGGG
GGAGCGCATCTTCTCTTTTAAGCTTGTCACGGTGGAGCGCAAGGTCACCA
GCTCCTGCTGTAAGGACTTGATAGCCGTGCTCCTTTCCTGGTGCTGCCTA
ATCTTGTGGACTTCCTGCCGAAGGGGCGTTGAGATGAGTGCTGCTGGCTT
CTTATTATTTGTGAGTAGGACCTCAATGTGTCTGTCGCGCCGTTTCACTT
CGGCTTCCAGGCGTTGGGTCTTGGTTTGGAGGAGCAGGGTTTTTTCCCTG
CTTTGTCGCAGTCCAAGCTTGAGCCGACGATTTTCGTGGCGTAAACTTTC
AAAGTCGTGA
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Synonyms
Publications