jgi.p|Nanoce1779_2|596815, mRNA_6929 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596815
Unique NamemRNA_6929
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1767
Alignment locationscaffold_17:453260..455026 -

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Properties
Property NameValue
TranscriptId596901
TrackFilteredModels2
ProteinId596815
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:453260..455026 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596815gene_6929Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596815mRNA_6929-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6929CDS_6929Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6929 ID=mRNA_6929|Name=jgi.p|Nanoce1779_2|596815|organism=Nannochloropsis oceanica|type=mRNA|length=1767bp
GAGGAGGAGGGGAGGGAGGGAGGGAGGGGGGAAGGGGAACGGGGGTTGAC
GTGGAAGCGTTCTTGAGGGTGTTGGTTGCCGTGACAGAGAGTGATGCGGA
TGGATACGTGGTGACAGATGCGAGTCAGACGGGCGGACATAGTCTGTGGA
CATTTATTGTGAGATTGCTGGGGCCGCCGTGCTTGGGCCTTAAACCCCTT
ACAGAGGCCAACACCTGGTTCGCCCTCGCCAAGGGGATGACGCGGATGAA
GGAGAGTGGGGAAGAGGGAGAGAGATTGCTAGCGCGACTGAAGGGGGGCA
AGGAGTGGAAGAGGGAATGCACGGTGCGGCCACATCCAATACGGATACCA
CGGGGAGGGGGGGGCGAGGTGAAAGTGGTGGAGGAGGGGGAGGGGAAAGG
GGAGGAGGAGGGGAAAGGGAATGACTCGGGAGAGGGGTTGGAGGAGGAGA
AGGAGGGGAATGAAAAGGAGGGAGCGATGGCCAACAGCAATGCAATGGAG
GCGGAGAGAAAATCCTCTTCTTCCTCTTCCTCCGATTCCGACGAGGCCTC
CTCCTCCAGCACCGCCGCCGCCGCCACCATTACCGCTGCTGCGTCCCCCC
CCACCCCCGCCATCTCCTCTTCGACCCCCTTCCCTTCCACCGGCATTCGA
AAAGTCCGTGGCACATTCCTGACAGGGATCACCCTTCGTCCCCCGGGGCC
TGGACTGGAAGCAGCTCTGTCCAATGCGATTCGAGAGCTCGCCCCTACAT
TCCCGCCTGAGCAGTACAGAGACGCTTTTGAGGCTTATAACACCTTGTGG
GAGTCTCACGAGACATTGCCAATGTCGCAATTGGTACCCCTAAGCTCGAC
TCACCCCATGGCCTCTGGGCAGGATGGTTGTAGTGTGGGCAGTGGCAGCG
GTGGAGGTCGGGGCGGAGGGAGGGGAAAGTATGCTTCCGGTACTTCTACG
TCAGGAGGTTGTGCGGATTATGATGGCAGGAAGGTGGCGCGGGGTCGCAA
GCGCAAGACTCAATCGGAGGGACCAGGAGCAAGAGTAGATGAACGAACAG
GGGCAGAGGAGGCAGCAATGGAAGAAGGAGGAGATGGAGGAGGGGCGGGC
GAGAGCGGGAAAGGCAAGGTGTTTAAGAGGGATAAGGCCACGACCAGCAA
GGCGGGCAAGAACGAGGACATGTCTGGTAATAACGCTCAGCACTTCGCGT
CTTCTGCTTCTACCCCCTCCTCATCTTCCACGTATACTCCTCCCCTCGGC
ATGGGGGCGAGTGCAATTCACCCTCTGATCGTCCGGGCGGATGGGGAGGG
AGGGGCGGAGGGACAGGAGGTGGTGTTGCCACCAGTCTTGCCTTTGCCTT
CGTCAGTCCGTCATATCGAGAGTTCCATTATGGTGGAAATGTAGAGACGT
ATTGAGGAAGGAGTAGGAATTGAGAAGGCTGATATGTAGACGAGGGAAGA
AAAGGAAAGGAGAAGAAGAGAGAGGACGATGTAAAGAAGAGAAAGTGCAG
GAGAAGCGGAATTTTGGATGGATCCACATGATAATGAAAATGAGTAAGAG
TGAGTCTTCTTGAATAAGAATATGCAATTGAGACCGGAGAATCGGAGCCA
TTTATATACATATACATACCGACATCAAAATACCAACACCACGACATCGC
AAAGGATGGGGCATACACGAATGCGCACCCAGCAAAAGCGACGAATACAT
CAGAAGAAGCAAAACCAAGCAGCCGATGTCATGTTCTGTGAGCTCTTCGA
TCTCTGGTGTATAGTTT
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protein sequence of jgi.p|Nanoce1779_2|596815

>mRNA_6929-protein ID=mRNA_6929-protein|Name=jgi.p|Nanoce1779_2|596815|organism=Nannochloropsis oceanica|type=polypeptide|length=386bp
MTRMKESGEEGERLLARLKGGKEWKRECTVRPHPIRIPRGGGGEVKVVEE
GEGKGEEEGKGNDSGEGLEEEKEGNEKEGAMANSNAMEAERKSSSSSSSD
SDEASSSSTAAAATITAAASPPTPAISSSTPFPSTGIRKVRGTFLTGITL
RPPGPGLEAALSNAIRELAPTFPPEQYRDAFEAYNTLWESHETLPMSQLV
PLSSTHPMASGQDGCSVGSGSGGGRGGGRGKYASGTSTSGGCADYDGRKV
ARGRKRKTQSEGPGARVDERTGAEEAAMEEGGDGGGAGESGKGKVFKRDK
ATTSKAGKNEDMSGNNAQHFASSASTPSSSSTYTPPLGMGASAIHPLIVR
ADGEGGAEGQEVVLPPVLPLPSSVRHIESSIMVEM*
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mRNA from alignment at scaffold_17:453260..455026-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6929 ID=mRNA_6929|Name=jgi.p|Nanoce1779_2|596815|organism=Nannochloropsis oceanica|type=mRNA|length=1767bp|location=Sequence derived from alignment at scaffold_17:453260..455026- (Nannochloropsis oceanica)
GAGGAGGAGGGGAGGGAGGGAGGGAGGGGGGAAGGGGAACGGGGGTTGAC
GTGGAAGCGTTCTTGAGGGTGTTGGTTGCCGTGACAGAGAGTGATGCGGA
TGGATACGTGGTGACAGATGCGAGTCAGACGGGCGGACATAGTCTGTGGA
CATTTATTGTGAGATTGCTGGGGCCGCCGTGCTTGGGCCTTAAACCCCTT
ACAGAGGCCAACACCTGGTTCGCCCTCGCCAAGGGGATGACGCGGATGAA
GGAGAGTGGGGAAGAGGGAGAGAGATTGCTAGCGCGACTGAAGGGGGGCA
AGGAGTGGAAGAGGGAATGCACGGTGCGGCCACATCCAATACGGATACCA
CGGGGAGGGGGGGGCGAGGTGAAAGTGGTGGAGGAGGGGGAGGGGAAAGG
GGAGGAGGAGGGGAAAGGGAATGACTCGGGAGAGGGGTTGGAGGAGGAGA
AGGAGGGGAATGAAAAGGAGGGAGCGATGGCCAACAGCAATGCAATGGAG
GCGGAGAGAAAATCCTCTTCTTCCTCTTCCTCCGATTCCGACGAGGCCTC
CTCCTCCAGCACCGCCGCCGCCGCCACCATTACCGCTGCTGCGTCCCCCC
CCACCCCCGCCATCTCCTCTTCGACCCCCTTCCCTTCCACCGGCATTCGA
AAAGTCCGTGGCACATTCCTGACAGGGATCACCCTTCGTCCCCCGGGGCC
TGGACTGGAAGCAGCTCTGTCCAATGCGATTCGAGAGCTCGCCCCTACAT
TCCCGCCTGAGCAGTACAGAGACGCTTTTGAGGCTTATAACACCTTGTGG
GAGTCTCACGAGACATTGCCAATGTCGCAATTGGTACCCCTAAGCTCGAC
TCACCCCATGGCCTCTGGGCAGGATGGTTGTAGTGTGGGCAGTGGCAGCG
GTGGAGGTCGGGGCGGAGGGAGGGGAAAGTATGCTTCCGGTACTTCTACG
TCAGGAGGTTGTGCGGATTATGATGGCAGGAAGGTGGCGCGGGGTCGCAA
GCGCAAGACTCAATCGGAGGGACCAGGAGCAAGAGTAGATGAACGAACAG
GGGCAGAGGAGGCAGCAATGGAAGAAGGAGGAGATGGAGGAGGGGCGGGC
GAGAGCGGGAAAGGCAAGGTGTTTAAGAGGGATAAGGCCACGACCAGCAA
GGCGGGCAAGAACGAGGACATGTCTGGTAATAACGCTCAGCACTTCGCGT
CTTCTGCTTCTACCCCCTCCTCATCTTCCACGTATACTCCTCCCCTCGGC
ATGGGGGCGAGTGCAATTCACCCTCTGATCGTCCGGGCGGATGGGGAGGG
AGGGGCGGAGGGACAGGAGGTGGTGTTGCCACCAGTCTTGCCTTTGCCTT
CGTCAGTCCGTCATATCGAGAGTTCCATTATGGTGGAAATGTAGAGACGT
ATTGAGGAAGGAGTAGGAATTGAGAAGGCTGATATGTAGACGAGGGAAGA
AAAGGAAAGGAGAAGAAGAGAGAGGACGATGTAAAGAAGAGAAAGTGCAG
GAGAAGCGGAATTTTGGATGGATCCACATGATAATGAAAATGAGTAAGAG
TGAGTCTTCTTGAATAAGAATATGCAATTGAGACCGGAGAATCGGAGCCA
TTTATATACATATACATACCGACATCAAAATACCAACACCACGACATCGC
AAAGGATGGGGCATACACGAATGCGCACCCAGCAAAAGCGACGAATACAT
CAGAAGAAGCAAAACCAAGCAGCCGATGTCATGTTCTGTGAGCTCTTCGA
TCTCTGGTGTATAGTTT
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Coding sequence (CDS) from alignment at scaffold_17:453260..455026-

>mRNA_6929 ID=mRNA_6929|Name=jgi.p|Nanoce1779_2|596815|organism=Nannochloropsis oceanica|type=CDS|length=1158bp|location=Sequence derived from alignment at scaffold_17:453260..455026- (Nannochloropsis oceanica)
ATGACGCGGATGAAGGAGAGTGGGGAAGAGGGAGAGAGATTGCTAGCGCG
ACTGAAGGGGGGCAAGGAGTGGAAGAGGGAATGCACGGTGCGGCCACATC
CAATACGGATACCACGGGGAGGGGGGGGCGAGGTGAAAGTGGTGGAGGAG
GGGGAGGGGAAAGGGGAGGAGGAGGGGAAAGGGAATGACTCGGGAGAGGG
GTTGGAGGAGGAGAAGGAGGGGAATGAAAAGGAGGGAGCGATGGCCAACA
GCAATGCAATGGAGGCGGAGAGAAAATCCTCTTCTTCCTCTTCCTCCGAT
TCCGACGAGGCCTCCTCCTCCAGCACCGCCGCCGCCGCCACCATTACCGC
TGCTGCGTCCCCCCCCACCCCCGCCATCTCCTCTTCGACCCCCTTCCCTT
CCACCGGCATTCGAAAAGTCCGTGGCACATTCCTGACAGGGATCACCCTT
CGTCCCCCGGGGCCTGGACTGGAAGCAGCTCTGTCCAATGCGATTCGAGA
GCTCGCCCCTACATTCCCGCCTGAGCAGTACAGAGACGCTTTTGAGGCTT
ATAACACCTTGTGGGAGTCTCACGAGACATTGCCAATGTCGCAATTGGTA
CCCCTAAGCTCGACTCACCCCATGGCCTCTGGGCAGGATGGTTGTAGTGT
GGGCAGTGGCAGCGGTGGAGGTCGGGGCGGAGGGAGGGGAAAGTATGCTT
CCGGTACTTCTACGTCAGGAGGTTGTGCGGATTATGATGGCAGGAAGGTG
GCGCGGGGTCGCAAGCGCAAGACTCAATCGGAGGGACCAGGAGCAAGAGT
AGATGAACGAACAGGGGCAGAGGAGGCAGCAATGGAAGAAGGAGGAGATG
GAGGAGGGGCGGGCGAGAGCGGGAAAGGCAAGGTGTTTAAGAGGGATAAG
GCCACGACCAGCAAGGCGGGCAAGAACGAGGACATGTCTGGTAATAACGC
TCAGCACTTCGCGTCTTCTGCTTCTACCCCCTCCTCATCTTCCACGTATA
CTCCTCCCCTCGGCATGGGGGCGAGTGCAATTCACCCTCTGATCGTCCGG
GCGGATGGGGAGGGAGGGGCGGAGGGACAGGAGGTGGTGTTGCCACCAGT
CTTGCCTTTGCCTTCGTCAGTCCGTCATATCGAGAGTTCCATTATGGTGG
AAATGTAG
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Synonyms
Publications