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Properties
| Property Name | Value |
|---|
| TranscriptId | 596897 |
| Track | FilteredModels2 |
| ProteinId | 596811 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_17 | supercontig | scaffold_17:450045..452529 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6928 ID=mRNA_6928|Name=jgi.p|Nanoce1779_2|596811|organism=Nannochloropsis oceanica|type=mRNA|length=2171bp
CAGCCCGAGAGACACGGAACTTCTTTGCTTTCCATTCTTATGCCATGGGC
GACCTAAATCGCAAACCTCCAAGCCTTATGATGGTCGTGCCAGGCAGGGA
CCGGGAGAGCAGCAGTAGCGATGAGTGTTCGGGCGGGACTGAGAATGGGG
GAGGGGGCAGGAGCCTGAAGAGATCCTCGGAGCAACTGGATCTGGAGGAA
TTACTAGCAGCCGCCTCCCGCAACGATGTGATCAAGATCCGAGACCTTGT
GCAGAGAGGGGTTCCCGTCGACGGGGCAGATTGCATGGGTGGAGGGCAGA
CAGCCCTGCATTTGGCCGCTATCGCCGGACACTCCGATGCGGTGCAATCG
CTGATCGACCTGGGTGCGGATTTGAATAGGGTAAACCACATCAGCTCTGC
TACGCCGCTCCACTTGGCAGCCATGGGAAGGGGCACGCGCGAGCGCAAAC
TTCAAGTAATCTCAGCGCTTGTGGCGGCGGGCGCGGACTGCTTTGTCGAG
GATCGGTATCAAAGTCAACCCCACCACTACGCTCACGACGAAACTATGCG
CTTGGCCATGAAGGGTCCTGACTTCAAACTCCACTCAGCCATATTAAACC
GAGACATTGGCCTACTTACGCAGCACTTGAAGGCCTTGGATTCTCCCGAG
CAAGTGAATGAGTGGGGACCCGACGGTAATACACCATTACACGTCGCAGC
TTGTATCCCATGCCCTTCTTCCGTCAGCGCCTTGATCCGAGCAGGCGCCA
ACCCCAACGAACGCAATGAGCACGGTACAACCGCGCTTCACACGGCTGCA
AGCGTCCTGAGCGAGGAGGTCGCGAGCCTGCTGTTGAAAGCTGGTGCGGC
GATCAACGAGAAGAGCATCTTAGTTGACGAGTACAGTAGCAAAGGAGTGA
ACTGGGTTGAGTCGCCCGCTCCCTCTCCTCGCGGGGCTTTGTCTTCTCCA
ACAATGGGGAGTGACGGCAGCGGTGGAAGTAAAGAAGGGAAACCGTCTCC
GCGTAGTCGCAAGGAGTACAAGGATGAGGCGGCGGCGGAGCACGAGACTC
CTCTCCATGTGGCGGTCCGCAAGGGTGCTTTGTGTATGGCGCGCTTTTTG
TTGCAACGAGGCGCGGCAGTAGACAGCACGGACCGGGCAGGCAAGACATC
TCTACATCTAGCCTTGGAGAATTTGTTGGAAGCAAGTCGGATTGGAAACG
CAGCGGAGACACAGGGATGCTTGGGGCTGGTGCGACTGCTGCTGGAAAGC
GGTGCGTGCCCTCTGCTGAGTAATCAAGTGCTGGGAAAGAAGTGGACGAC
CGTACACTGGGCTGTACAGCATGGGAATGTGGATGCATTGGAAGTTTTGG
TCGCGCATACGTTCGGCTCGACGAAACAACAGCTTTTGGACGCCCAAGAT
GAGAGGGGGTTGACAGCGTTGATGCTGGCGGCAAGGGAGGGAAAGGTTGG
GTGTTTGGAAGCATTGCTTCGAAATGGAGCAGACGCAGGCTTGAGAAATG
TTGAAGGAATGTCAGCGAGAGACTTGGCGGCTGCGGCAGGGATGGAGGCG
GCCCTGTGTATTATCGACACATTTGCGACGTTTGCGTCGATGGCGTGAGG
GAGGGAGACAGCAAGAGAGGGAAAGAAACAAAGGACGCCGCGAGACGGCC
ATTTAAAGTGGAAATAATTGCAGCATTTGATGTGACTTGTCCTCACGGTA
ATGCTCATATAGTATACAAACAAGCATATGAAGGTATAAGTATAGTAAAT
TGGAGGGGAGATTGAAATTGAAAGAGGAAATCGGTAGGGCGGGACGCGAG
GAGACTCAGTCCACACAGAAAGGAAATTAGGTTCACCAACAGGAAAAGAG
GGGGAGATAAAAGTAAAATGGGCGAGGAGCTTCTTCATTTGACATATGGC
CTGCATCTTGAAAGGGAAATACTGTTGTGCAGCGCTGGTGCCCACATTCT
TAGTTTAAAGCAGCAACACATTTAAATATTAATAGAAATCGGCGGATTTG
CGCAGCACTTGAGACAAGCTTCACAAAAGAATTGTGGCATGCGCTGGACT
ATTCATTTTACAGTAAGGAACCTTTTGGACGATTTAAAAGATGAATAAGC
GTGGCCATGTGATGTGAAGTCGGCATATTACACTGATTTGATGAAAGTAA
ATAATACAATGAAGTGAAACG back to topprotein sequence of jgi.p|Nanoce1779_2|596811 >mRNA_6928-protein ID=mRNA_6928-protein|Name=jgi.p|Nanoce1779_2|596811|organism=Nannochloropsis oceanica|type=polypeptide|length=518bp
MGDLNRKPPSLMMVVPGRDRESSSSDECSGGTENGGGGRSLKRSSEQLDL
EELLAAASRNDVIKIRDLVQRGVPVDGADCMGGGQTALHLAAIAGHSDAV
QSLIDLGADLNRVNHISSATPLHLAAMGRGTRERKLQVISALVAAGADCF
VEDRYQSQPHHYAHDETMRLAMKGPDFKLHSAILNRDIGLLTQHLKALDS
PEQVNEWGPDGNTPLHVAACIPCPSSVSALIRAGANPNERNEHGTTALHT
AASVLSEEVASLLLKAGAAINEKSILVDEYSSKGVNWVESPAPSPRGALS
SPTMGSDGSGGSKEGKPSPRSRKEYKDEAAAEHETPLHVAVRKGALCMAR
FLLQRGAAVDSTDRAGKTSLHLALENLLEASRIGNAAETQGCLGLVRLLL
ESGACPLLSNQVLGKKWTTVHWAVQHGNVDALEVLVAHTFGSTKQQLLDA
QDERGLTALMLAAREGKVGCLEALLRNGADAGLRNVEGMSARDLAAAAGM
EAALCIIDTFATFASMA* back to topmRNA from alignment at scaffold_17:450045..452529- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6928 ID=mRNA_6928|Name=jgi.p|Nanoce1779_2|596811|organism=Nannochloropsis oceanica|type=mRNA|length=2485bp|location=Sequence derived from alignment at scaffold_17:450045..452529- (Nannochloropsis oceanica)
CAGCCCGAGAGACACGGAACTTCTTTGCTTTCCATTCTTATGCCATGGGC
GACCTAAATCGCAAACCTCCAAGCCTTATGATGGTCGTGCCAGGCAGGGA
CCGGGAGAGCAGCAGTAGCGATGAGTGTTCGGGCGGGACTGAGAATGGGG
GAGGGGGCAGGAGCCTGAAGAGATCCTCGGAGCAACTGGATCTGGAGGAA
TTACTAGCAGCCGCCTCCCGCAACGATGTGATCAAGATCCGAGACCTTGT
GCAGGTAAGTTGATATCAGACACTACGCTTTAATAATGGTTACGTGTCAA
ATGCAGAATCATCGTGTGAGCGTGCGCCTTCTTTTTCTGCGCCCGCCTCC
CCTCGTTCCTTGCAGATAAGTTGCGCGCCGCGCTCCTCGTAGGTGACGTT
TTATCTTCTTTAAACGGTGTGGTGCGTCCTGGGACACTTTAGCTCTTACA
TCGAACCTCTTTTCCACCACAAAAAAACAGAGAGGGGTTCCCGTCGACGG
GGCAGATTGCATGGGTGGAGGGCAGACAGCCCTGCATTTGGCCGCTATCG
CCGGACACTCCGATGCGGTGCAATCGCTGATCGACCTGGGTGCGGATTTG
AATAGGGTAAACCACATCAGCTCTGCTACGCCGCTCCACTTGGCAGGTAT
GTGAAGAAAGGGTATTAAGGTGTCCGTCGCCTTCTGGCTGGCTTGCATTC
ACTCATGCCTTTTTCTCTCCATACACATTTACAGCCATGGGAAGGGGCAC
GCGCGAGCGCAAACTTCAAGTAATCTCAGCGCTTGTGGCGGCGGGCGCGG
ACTGCTTTGTCGAGGATCGGTATCAAAGTCAACCCCACCACTACGCTCAC
GACGAAACTATGCGCTTGGCCATGAAGGGTCCTGACTTCAAACTCCACTC
AGCCATATTAAACCGAGACATTGGCCTACTTACGCAGCACTTGAAGGCCT
TGGATTCTCCCGAGCAAGTGAATGAGTGGGGACCCGACGGTAATACACCA
TTACACGTCGCAGCTTGTATCCCATGCCCTTCTTCCGTCAGCGCCTTGAT
CCGAGCAGGCGCCAACCCCAACGAACGCAATGAGCACGGTACAACCGCGC
TTCACACGGCTGCAAGCGTCCTGAGCGAGGAGGTCGCGAGCCTGCTGTTG
AAAGCTGGTGCGGCGATCAACGAGAAGAGCATCTTAGTTGACGAGTACAG
TAGCAAAGGAGTGAACTGGGTTGAGTCGCCCGCTCCCTCTCCTCGCGGGG
CTTTGTCTTCTCCAACAATGGGGAGTGACGGCAGCGGTGGAAGTAAAGAA
GGGAAACCGTCTCCGCGTAGTCGCAAGGAGTACAAGGATGAGGCGGCGGC
GGAGCACGAGACTCCTCTCCATGTGGCGGTCCGCAAGGGTGCTTTGTGTA
TGGCGCGCTTTTTGTTGCAACGAGGCGCGGCAGTAGACAGCACGGACCGG
GCAGGCAAGACATCTCTACATCTAGCCTTGGAGAATTTGTTGGAAGCAAG
TCGGATTGGAAACGCAGCGGAGACACAGGGATGCTTGGGGCTGGTGCGAC
TGCTGCTGGAAAGCGGTGCGTGCCCTCTGCTGAGTAATCAAGTGCTGGGA
AAGAAGTGGACGACCGTACACTGGGCTGTACAGCATGGGAATGTGGATGC
ATTGGAAGTTTTGGTCGCGCATACGTTCGGCTCGACGAAACAACAGCTTT
TGGACGCCCAAGATGAGAGGGGGTTGACAGCGTTGATGCTGGCGGCAAGG
GAGGGAAAGGTTGGGTGTTTGGAAGCATTGCTTCGAAATGGAGCAGACGC
AGGCTTGAGAAATGTTGAAGGAATGTCAGCGAGAGACTTGGCGGCTGCGG
CAGGGATGGAGGCGGCCCTGTGTATTATCGACACATTTGCGACGTTTGCG
TCGATGGCGTGAGGGAGGGAGACAGCAAGAGAGGGAAAGAAACAAAGGAC
GCCGCGAGACGGCCATTTAAAGTGGAAATAATTGCAGCATTTGATGTGAC
TTGTCCTCACGGTAATGCTCATATAGTATACAAACAAGCATATGAAGGTA
TAAGTATAGTAAATTGGAGGGGAGATTGAAATTGAAAGAGGAAATCGGTA
GGGCGGGACGCGAGGAGACTCAGTCCACACAGAAAGGAAATTAGGTTCAC
CAACAGGAAAAGAGGGGGAGATAAAAGTAAAATGGGCGAGGAGCTTCTTC
ATTTGACATATGGCCTGCATCTTGAAAGGGAAATACTGTTGTGCAGCGCT
GGTGCCCACATTCTTAGTTTAAAGCAGCAACACATTTAAATATTAATAGA
AATCGGCGGATTTGCGCAGCACTTGAGACAAGCTTCACAAAAGAATTGTG
GCATGCGCTGGACTATTCATTTTACAGTAAGGAACCTTTTGGACGATTTA
AAAGATGAATAAGCGTGGCCATGTGATGTGAAGTCGGCATATTACACTGA
TTTGATGAAAGTAAATAATACAATGAAGTGAAACG back to topCoding sequence (CDS) from alignment at scaffold_17:450045..452529- >mRNA_6928 ID=mRNA_6928|Name=jgi.p|Nanoce1779_2|596811|organism=Nannochloropsis oceanica|type=CDS|length=4662bp|location=Sequence derived from alignment at scaffold_17:450045..452529- (Nannochloropsis oceanica)
CCATGGGAAGGGGCACGCGCGAGCGCAAACTTCAAGTAATCTCAGCGCTT
GTGGCGGCGGGCGCGGACTGCTTTGTCGAGGATCGGTATCAAAGTCAACC
CCACCACTACGCTCACGACGAAACTATGCGCTTGGCCATGAAGGGTCCTG
ACTTCAAACTCCACTCAGCCATATTAAACCGAGACATTGGCCTACTTACG
CAGCACTTGAAGGCCTTGGATTCTCCCGAGCAAGTGAATGAGTGGGGACC
CGACGGTAATACACCATTACACGTCGCAGCTTGTATCCCATGCCCTTCTT
CCGTCAGCGCCTTGATCCGAGCAGGCGCCAACCCCAACGAACGCAATGAG
CACGGTACAACCGCGCTTCACACGGCTGCAAGCGTCCTGAGCGAGGAGGT
CGCGAGCCTGCTGTTGAAAGCTGGTGCGGCGATCAACGAGAAGAGCATCT
TAGTTGACGAGTACAGTAGCAAAGGAGTGAACTGGGTTGAGTCGCCCGCT
CCCTCTCCTCGCGGGGCTTTGTCTTCTCCAACAATGGGGAGTGACGGCAG
CGGTGGAAGTAAAGAAGGGAAACCGTCTCCGCGTAGTCGCAAGGAGTACA
AGGATGAGGCGGCGGCGGAGCACGAGACTCCTCTCCATGTGGCGGTCCGC
AAGGGTGCTTTGTGTATGGCGCGCTTTTTGTTGCAACGAGGCGCGGCAGT
AGACAGCACGGACCGGGCAGGCAAGACATCTCTACATCTAGCCTTGGAGA
ATTTGTTGGAAGCAAGTCGGATTGGAAACGCAGCGGAGACACAGGGATGC
TTGGGGCTGGTGCGACTGCTGCTGGAAAGCGGTGCGTGCCCTCTGCTGAG
TAATCAAGTGCTGGGAAAGAAGTGGACGACCGTACACTGGGCTGTACAGC
ATGGGAATGTGGATGCATTGGAAGTTTTGGTCGCGCATACGTTCGGCTCG
ACGAAACAACAGCTTTTGGACGCCCAAGATGAGAGGGGGTTGACAGCGTT
GATGCTGGCGGCAAGGGAGGGAAAGGTTGGGTGTTTGGAAGCATTGCTTC
GAAATGGAGCAGACGCAGGCTTGAGAAATGTTGAAGGAATGTCAGCGAGA
GACTTGGCGGCTGCGGCAGGGATGGAGGCGGCCCTGTGTATTATCGACAC
ATTTGCGACGTTTGCGTCGATGGCGTGAAGAGGGGTTCCCGTCGACGGGG
CAGATTGCATGGGTGGAGGGCAGACAGCCCTGCATTTGGCCGCTATCGCC
GGACACTCCGATGCGGTGCAATCGCTGATCGACCTGGGTGCGGATTTGAA
TAGGGTAAACCACATCAGCTCTGCTACGCCGCTCCACTTGGCAGATGGGC
GACCTAAATCGCAAACCTCCAAGCCTTATGATGGTCGTGCCAGGCAGGGA
CCGGGAGAGCAGCAGTAGCGATGAGTGTTCGGGCGGGACTGAGAATGGGG
GAGGGGGCAGGAGCCTGAAGAGATCCTCGGAGCAACTGGATCTGGAGGAA
TTACTAGCAGCCGCCTCCCGCAACGATGTGATCAAGATCCGAGACCTTGT
GCAGCCATGGGAAGGGGCACGCGCGAGCGCAAACTTCAAGTAATCTCAGC
GCTTGTGGCGGCGGGCGCGGACTGCTTTGTCGAGGATCGGTATCAAAGTC
AACCCCACCACTACGCTCACGACGAAACTATGCGCTTGGCCATGAAGGGT
CCTGACTTCAAACTCCACTCAGCCATATTAAACCGAGACATTGGCCTACT
TACGCAGCACTTGAAGGCCTTGGATTCTCCCGAGCAAGTGAATGAGTGGG
GACCCGACGGTAATACACCATTACACGTCGCAGCTTGTATCCCATGCCCT
TCTTCCGTCAGCGCCTTGATCCGAGCAGGCGCCAACCCCAACGAACGCAA
TGAGCACGGTACAACCGCGCTTCACACGGCTGCAAGCGTCCTGAGCGAGG
AGGTCGCGAGCCTGCTGTTGAAAGCTGGTGCGGCGATCAACGAGAAGAGC
ATCTTAGTTGACGAGTACAGTAGCAAAGGAGTGAACTGGGTTGAGTCGCC
CGCTCCCTCTCCTCGCGGGGCTTTGTCTTCTCCAACAATGGGGAGTGACG
GCAGCGGTGGAAGTAAAGAAGGGAAACCGTCTCCGCGTAGTCGCAAGGAG
TACAAGGATGAGGCGGCGGCGGAGCACGAGACTCCTCTCCATGTGGCGGT
CCGCAAGGGTGCTTTGTGTATGGCGCGCTTTTTGTTGCAACGAGGCGCGG
CAGTAGACAGCACGGACCGGGCAGGCAAGACATCTCTACATCTAGCCTTG
GAGAATTTGTTGGAAGCAAGTCGGATTGGAAACGCAGCGGAGACACAGGG
ATGCTTGGGGCTGGTGCGACTGCTGCTGGAAAGCGGTGCGTGCCCTCTGC
TGAGTAATCAAGTGCTGGGAAAGAAGTGGACGACCGTACACTGGGCTGTA
CAGCATGGGAATGTGGATGCATTGGAAGTTTTGGTCGCGCATACGTTCGG
CTCGACGAAACAACAGCTTTTGGACGCCCAAGATGAGAGGGGGTTGACAG
CGTTGATGCTGGCGGCAAGGGAGGGAAAGGTTGGGTGTTTGGAAGCATTG
CTTCGAAATGGAGCAGACGCAGGCTTGAGAAATGTTGAAGGAATGTCAGC
GAGAGACTTGGCGGCTGCGGCAGGGATGGAGGCGGCCCTGTGTATTATCG
ACACATTTGCGACGTTTGCGTCGATGGCGTGAAGAGGGGTTCCCGTCGAC
GGGGCAGATTGCATGGGTGGAGGGCAGACAGCCCTGCATTTGGCCGCTAT
CGCCGGACACTCCGATGCGGTGCAATCGCTGATCGACCTGGGTGCGGATT
TGAATAGGGTAAACCACATCAGCTCTGCTACGCCGCTCCACTTGGCAGAT
GGGCGACCTAAATCGCAAACCTCCAAGCCTTATGATGGTCGTGCCAGGCA
GGGACCGGGAGAGCAGCAGTAGCGATGAGTGTTCGGGCGGGACTGAGAAT
GGGGGAGGGGGCAGGAGCCTGAAGAGATCCTCGGAGCAACTGGATCTGGA
GGAATTACTAGCAGCCGCCTCCCGCAACGATGTGATCAAGATCCGAGACC
TTGTGCAGCCATGGGAAGGGGCACGCGCGAGCGCAAACTTCAAGTAATCT
CAGCGCTTGTGGCGGCGGGCGCGGACTGCTTTGTCGAGGATCGGTATCAA
AGTCAACCCCACCACTACGCTCACGACGAAACTATGCGCTTGGCCATGAA
GGGTCCTGACTTCAAACTCCACTCAGCCATATTAAACCGAGACATTGGCC
TACTTACGCAGCACTTGAAGGCCTTGGATTCTCCCGAGCAAGTGAATGAG
TGGGGACCCGACGGTAATACACCATTACACGTCGCAGCTTGTATCCCATG
CCCTTCTTCCGTCAGCGCCTTGATCCGAGCAGGCGCCAACCCCAACGAAC
GCAATGAGCACGGTACAACCGCGCTTCACACGGCTGCAAGCGTCCTGAGC
GAGGAGGTCGCGAGCCTGCTGTTGAAAGCTGGTGCGGCGATCAACGAGAA
GAGCATCTTAGTTGACGAGTACAGTAGCAAAGGAGTGAACTGGGTTGAGT
CGCCCGCTCCCTCTCCTCGCGGGGCTTTGTCTTCTCCAACAATGGGGAGT
GACGGCAGCGGTGGAAGTAAAGAAGGGAAACCGTCTCCGCGTAGTCGCAA
GGAGTACAAGGATGAGGCGGCGGCGGAGCACGAGACTCCTCTCCATGTGG
CGGTCCGCAAGGGTGCTTTGTGTATGGCGCGCTTTTTGTTGCAACGAGGC
GCGGCAGTAGACAGCACGGACCGGGCAGGCAAGACATCTCTACATCTAGC
CTTGGAGAATTTGTTGGAAGCAAGTCGGATTGGAAACGCAGCGGAGACAC
AGGGATGCTTGGGGCTGGTGCGACTGCTGCTGGAAAGCGGTGCGTGCCCT
CTGCTGAGTAATCAAGTGCTGGGAAAGAAGTGGACGACCGTACACTGGGC
TGTACAGCATGGGAATGTGGATGCATTGGAAGTTTTGGTCGCGCATACGT
TCGGCTCGACGAAACAACAGCTTTTGGACGCCCAAGATGAGAGGGGGTTG
ACAGCGTTGATGCTGGCGGCAAGGGAGGGAAAGGTTGGGTGTTTGGAAGC
ATTGCTTCGAAATGGAGCAGACGCAGGCTTGAGAAATGTTGAAGGAATGT
CAGCGAGAGACTTGGCGGCTGCGGCAGGGATGGAGGCGGCCCTGTGTATT
ATCGACACATTTGCGACGTTTGCGTCGATGGCGTGAAGAGGGGTTCCCGT
CGACGGGGCAGATTGCATGGGTGGAGGGCAGACAGCCCTGCATTTGGCCG
CTATCGCCGGACACTCCGATGCGGTGCAATCGCTGATCGACCTGGGTGCG
GATTTGAATAGGGTAAACCACATCAGCTCTGCTACGCCGCTCCACTTGGC
AGATGGGCGACCTAAATCGCAAACCTCCAAGCCTTATGATGGTCGTGCCA
GGCAGGGACCGGGAGAGCAGCAGTAGCGATGAGTGTTCGGGCGGGACTGA
GAATGGGGGAGGGGGCAGGAGCCTGAAGAGATCCTCGGAGCAACTGGATC
TGGAGGAATTACTAGCAGCCGCCTCCCGCAACGATGTGATCAAGATCCGA
GACCTTGTGCAG back to top
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