jgi.p|Nanoce1779_2|596802, mRNA_6927 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|596802
Unique Name	mRNA_6927
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2131
Alignment location	scaffold_17:445794..447924 -

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Properties


Property Name	Value
TranscriptId	596888
Track	FilteredModels2
ProteinId	596802

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:445794..447924 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596802	gene_6927	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596802	mRNA_6927-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6927	CDS_6927	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:445794..447924-
coding sequence from alignment at scaffold_17:445794..447924-

mRNA sequence

>mRNA_6927 ID=mRNA_6927|Name=jgi.p|Nanoce1779_2|596802|organism=Nannochloropsis oceanica|type=mRNA|length=2131bp
ACAGGACTTTTTAGCCTCTCATCGTCGTCATCATCAGCCTCATGGCGAGC
ACCAGCAGCAACGAAGTCTGGGTCTTGGCATCCTACCCTGACGGCCCCCC
GCAAACTGCCGACTTTCGCAAGCAAACACGCCCCATGCCTGTGCCGGGGC
CGTCTCAGGTGCTTGTCAAGACGCTGTGTCTCTCCGTAGACCCTTACTTG
CGGATCAAGCTGTACCCCCCAAAGACTGACAATGCCACCAGTAACGACGC
AGACAACTCCTCCACGGATGAATTCGCGCCCTTCAAACTCAATGAGCCTC
TAAGTTCCATGTTTGTTGGCGAGGTCGTCAGCACAGGCCCTGACGTCCAA
GGGTTCTCACCGGGTGACCGTGTCTCGGGCGTGGCGCCCTGGGCAGCCTT
TGCGGCACTCAACGCCAACACACTCCAAAAAATACCTTCAGACCTTCCCC
CGTCCGCGTATCTTAATGTGCTTGGCCTCATTGGTTTATCGACGTACTTC
CCGTTGGTGGAGATTGGGCAGCCGAAGGCAGGGGAGATGGTGTACGTTTC
TGGAGCGGCTGGGGCGGTTGGCTCGCTGGTTGGGCAGTTATGCAAGGCGT
TTGGGTGTAAGGTGATAGGGTCGACGGGCTCGGACAGTAAAGTGGAGGTT
TTGAAGAAATTGGGATTCGACCATGTGTTTAATTACAAGACGAAGAAGGT
GGAGGAAGCATTGGAGGAATGGGCACGGGGGGGGGTGGATGTGTACTGGG
ACAACGTAGGCGGGGAAACCCTTGATACGTTGTTGACAAAGATGAAGAGG
AATGGAAGGATTGTGGCATGTGGTTCCATTTCGCAGTATCATATCTTGGG
CACGGAGAAAGCTTATGGGTTGAAGAATTACTTCAAGGTGGTGGCGGGGT
GTTTGAAGTGGCAGGGTTTTTTGGCGACGGATTATGTGGGGCGCGCGGGA
GAGTTGTTCGCGAAGCTGGGGAAGCTCATGAAGGATGGAACGGTATGTAC
ATATGACGAAAATAGATGGGTGGTCTTTGGGGCTCTATCACCTCTCTGTG
GGTTTTGGTCCGCGTCGATTGTAAGGGAGAAAACACGGAACAAACCAACA
AAGTAGTTTAATAATCACCCAATTTATGCATCTTGTTTACAACCTCACTC
CCCTCCCCTCCCTCTTTTAGATCAAACCGCTGGAAACGATCGTGGACGGA
CTCGACAGTGTTCCTCAGGCATTCCTCGGTCTTTTCTCCGGTGACAACCT
CGGCAAGATGCTCATCAAGGTCGCGGAGCCCTCCACGCCAACCGGCACTA
AAACAGGGGAGGCAAGGGAGGAAAGAGGGATAGAGACTAGCAGTAGGAGT
AGTGCGCTGGACCCTACCAAGGTTGGGTTGGAGAAAGAGCTGGCCGAGGC
GAGAGAAATGATGATGCTAGCACACAACCCCCAACTCAAGGCCTCCCTCT
CCTCCCTCATCGCCCGCCTGGAGAAGGAAGCTCTCTCAATCCCTTCCACC
CCCCTTCCTCCCTCTTCCTCTGCTCCTCCCCCGTCATTCAATGGCTCGAG
CCCTACTGCATTGCTTGCTTCTTTGCAGCCGGCTTACTGCTCCATCGATT
CATACGGATGGGACCAGGGGGAATACAACAGCGCATGGGTGTCTGTCTAC
GTGACGTTACCAGGGGTCGGGAAAGTGAAAGATGCGGTACATTGCGCTTT
CACTCCGTTTGGATTTGACCTGAAGATTGAAGGATTGGAAGGTGGGAAGA
ACTATCGGCTCGTGAAGGATAACCTGGAAAAGGGTATTGTGGTTGAGGAT
TCGAAGGTCAAGGTGAAAGAAAATAAGGTGGTGGTCATGCTGAAGAAGAG
GAAGGGGGAGTTTGGTTCTTATGATCATTGGATGGACCTTACAGCGAAGA
AAAAGGTGGGAGGGGGAGGAGGAGGGAAGGACGGAGGAGGGTTAGGAGGG
GGAGATGGAGGAATGGGGGGGTTGATGGATGTGATGAAGCAGATGTATGA
AGAGGGGGACGATACAATTAAGAAGACGATTGCCGAGTCGATGATGAAGG
TGCAGAGGGGGGACAGAAGTGGAAGTGGGATGCCTGAATTTGGTGGAGGA
GGGTTGGGGGGCGGGAGAGCGGGAGGGATGG

protein sequence of jgi.p|Nanoce1779_2|596802

>mRNA_6927-protein ID=mRNA_6927-protein|Name=jgi.p|Nanoce1779_2|596802|organism=Nannochloropsis oceanica|type=polypeptide|length=355bp
MASTSSNEVWVLASYPDGPPQTADFRKQTRPMPVPGPSQVLVKTLCLSVD
PYLRIKLYPPKTDNATSNDADNSSTDEFAPFKLNEPLSSMFVGEVVSTGP
DVQGFSPGDRVSGVAPWAAFAALNANTLQKIPSDLPPSAYLNVLGLIGLS
TYFPLVEIGQPKAGEMVYVSGAAGAVGSLVGQLCKAFGCKVIGSTGSDSK
VEVLKKLGFDHVFNYKTKKVEEALEEWARGGVDVYWDNVGGETLDTLLTK
MKRNGRIVACGSISQYHILGTEKAYGLKNYFKVVAGCLKWQGFLATDYVG
RAGELFAKLGKLMKDGTVCTYDENRWVVFGALSPLCGFWSASIVREKTRN
KPTK*

mRNA from alignment at scaffold_17:445794..447924-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6927 ID=mRNA_6927|Name=jgi.p|Nanoce1779_2|596802|organism=Nannochloropsis oceanica|type=mRNA|length=2131bp|location=Sequence derived from alignment at scaffold_17:445794..447924- (Nannochloropsis oceanica)
ACAGGACTTTTTAGCCTCTCATCGTCGTCATCATCAGCCTCATGGCGAGC
ACCAGCAGCAACGAAGTCTGGGTCTTGGCATCCTACCCTGACGGCCCCCC
GCAAACTGCCGACTTTCGCAAGCAAACACGCCCCATGCCTGTGCCGGGGC
CGTCTCAGGTGCTTGTCAAGACGCTGTGTCTCTCCGTAGACCCTTACTTG
CGGATCAAGCTGTACCCCCCAAAGACTGACAATGCCACCAGTAACGACGC
AGACAACTCCTCCACGGATGAATTCGCGCCCTTCAAACTCAATGAGCCTC
TAAGTTCCATGTTTGTTGGCGAGGTCGTCAGCACAGGCCCTGACGTCCAA
GGGTTCTCACCGGGTGACCGTGTCTCGGGCGTGGCGCCCTGGGCAGCCTT
TGCGGCACTCAACGCCAACACACTCCAAAAAATACCTTCAGACCTTCCCC
CGTCCGCGTATCTTAATGTGCTTGGCCTCATTGGTTTATCGACGTACTTC
CCGTTGGTGGAGATTGGGCAGCCGAAGGCAGGGGAGATGGTGTACGTTTC
TGGAGCGGCTGGGGCGGTTGGCTCGCTGGTTGGGCAGTTATGCAAGGCGT
TTGGGTGTAAGGTGATAGGGTCGACGGGCTCGGACAGTAAAGTGGAGGTT
TTGAAGAAATTGGGATTCGACCATGTGTTTAATTACAAGACGAAGAAGGT
GGAGGAAGCATTGGAGGAATGGGCACGGGGGGGGGTGGATGTGTACTGGG
ACAACGTAGGCGGGGAAACCCTTGATACGTTGTTGACAAAGATGAAGAGG
AATGGAAGGATTGTGGCATGTGGTTCCATTTCGCAGTATCATATCTTGGG
CACGGAGAAAGCTTATGGGTTGAAGAATTACTTCAAGGTGGTGGCGGGGT
GTTTGAAGTGGCAGGGTTTTTTGGCGACGGATTATGTGGGGCGCGCGGGA
GAGTTGTTCGCGAAGCTGGGGAAGCTCATGAAGGATGGAACGGTATGTAC
ATATGACGAAAATAGATGGGTGGTCTTTGGGGCTCTATCACCTCTCTGTG
GGTTTTGGTCCGCGTCGATTGTAAGGGAGAAAACACGGAACAAACCAACA
AAGTAGTTTAATAATCACCCAATTTATGCATCTTGTTTACAACCTCACTC
CCCTCCCCTCCCTCTTTTAGATCAAACCGCTGGAAACGATCGTGGACGGA
CTCGACAGTGTTCCTCAGGCATTCCTCGGTCTTTTCTCCGGTGACAACCT
CGGCAAGATGCTCATCAAGGTCGCGGAGCCCTCCACGCCAACCGGCACTA
AAACAGGGGAGGCAAGGGAGGAAAGAGGGATAGAGACTAGCAGTAGGAGT
AGTGCGCTGGACCCTACCAAGGTTGGGTTGGAGAAAGAGCTGGCCGAGGC
GAGAGAAATGATGATGCTAGCACACAACCCCCAACTCAAGGCCTCCCTCT
CCTCCCTCATCGCCCGCCTGGAGAAGGAAGCTCTCTCAATCCCTTCCACC
CCCCTTCCTCCCTCTTCCTCTGCTCCTCCCCCGTCATTCAATGGCTCGAG
CCCTACTGCATTGCTTGCTTCTTTGCAGCCGGCTTACTGCTCCATCGATT
CATACGGATGGGACCAGGGGGAATACAACAGCGCATGGGTGTCTGTCTAC
GTGACGTTACCAGGGGTCGGGAAAGTGAAAGATGCGGTACATTGCGCTTT
CACTCCGTTTGGATTTGACCTGAAGATTGAAGGATTGGAAGGTGGGAAGA
ACTATCGGCTCGTGAAGGATAACCTGGAAAAGGGTATTGTGGTTGAGGAT
TCGAAGGTCAAGGTGAAAGAAAATAAGGTGGTGGTCATGCTGAAGAAGAG
GAAGGGGGAGTTTGGTTCTTATGATCATTGGATGGACCTTACAGCGAAGA
AAAAGGTGGGAGGGGGAGGAGGAGGGAAGGACGGAGGAGGGTTAGGAGGG
GGAGATGGAGGAATGGGGGGGTTGATGGATGTGATGAAGCAGATGTATGA
AGAGGGGGACGATACAATTAAGAAGACGATTGCCGAGTCGATGATGAAGG
TGCAGAGGGGGGACAGAAGTGGAAGTGGGATGCCTGAATTTGGTGGAGGA
GGGTTGGGGGGCGGGAGAGCGGGAGGGATGG

Coding sequence (CDS) from alignment at scaffold_17:445794..447924-

>mRNA_6927 ID=mRNA_6927|Name=jgi.p|Nanoce1779_2|596802|organism=Nannochloropsis oceanica|type=CDS|length=1065bp|location=Sequence derived from alignment at scaffold_17:445794..447924- (Nannochloropsis oceanica)
ATGGCGAGCACCAGCAGCAACGAAGTCTGGGTCTTGGCATCCTACCCTGA
CGGCCCCCCGCAAACTGCCGACTTTCGCAAGCAAACACGCCCCATGCCTG
TGCCGGGGCCGTCTCAGGTGCTTGTCAAGACGCTGTGTCTCTCCGTAGAC
CCTTACTTGCGGATCAAGCTGTACCCCCCAAAGACTGACAATGCCACCAG
TAACGACGCAGACAACTCCTCCACGGATGAATTCGCGCCCTTCAAACTCA
ATGAGCCTCTAAGTTCCATGTTTGTTGGCGAGGTCGTCAGCACAGGCCCT
GACGTCCAAGGGTTCTCACCGGGTGACCGTGTCTCGGGCGTGGCGCCCTG
GGCAGCCTTTGCGGCACTCAACGCCAACACACTCCAAAAAATACCTTCAG
ACCTTCCCCCGTCCGCGTATCTTAATGTGCTTGGCCTCATTGGTTTATCG
ACGTACTTCCCGTTGGTGGAGATTGGGCAGCCGAAGGCAGGGGAGATGGT
GTACGTTTCTGGAGCGGCTGGGGCGGTTGGCTCGCTGGTTGGGCAGTTAT
GCAAGGCGTTTGGGTGTAAGGTGATAGGGTCGACGGGCTCGGACAGTAAA
GTGGAGGTTTTGAAGAAATTGGGATTCGACCATGTGTTTAATTACAAGAC
GAAGAAGGTGGAGGAAGCATTGGAGGAATGGGCACGGGGGGGGGTGGATG
TGTACTGGGACAACGTAGGCGGGGAAACCCTTGATACGTTGTTGACAAAG
ATGAAGAGGAATGGAAGGATTGTGGCATGTGGTTCCATTTCGCAGTATCA
TATCTTGGGCACGGAGAAAGCTTATGGGTTGAAGAATTACTTCAAGGTGG
TGGCGGGGTGTTTGAAGTGGCAGGGTTTTTTGGCGACGGATTATGTGGGG
CGCGCGGGAGAGTTGTTCGCGAAGCTGGGGAAGCTCATGAAGGATGGAAC
GGTATGTACATATGACGAAAATAGATGGGTGGTCTTTGGGGCTCTATCAC
CTCTCTGTGGGTTTTGGTCCGCGTCGATTGTAAGGGAGAAAACACGGAAC
AAACCAACAAAGTAG

Synonyms

Publications