jgi.p|Nanoce1779_2|557912, mRNA_6925 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|557912
Unique NamemRNA_6925
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1560
Alignment locationscaffold_17:442621..444267 -

Link to JBrowse

Properties
Property NameValue
TranscriptId557998
TrackFilteredModels2
ProteinId557912
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:442621..444267 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|557912gene_6925Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|557912mRNA_6925-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6925CDS_6925Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6925 ID=mRNA_6925|Name=jgi.p|Nanoce1779_2|557912|organism=Nannochloropsis oceanica|type=mRNA|length=1560bp
ATGTACGACGTGGGCCTCTTGCATCTTCGAGTCCATCCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCCTCAATCAATTACAACACTGAATCCATTC
CTGAGTCCTGCACTTCCCCTGTTTCGTCCCCTCCCCCTGCCCCACCTTCA
TTCCCCATACGTATCGCCGCTTTTGACCTAGACTCAACCCTCATCAAAAC
CCGCTCGCAAAAATCCTTCGCCGCCTCTCCCACGGACTGGCAATGGTTCC
ATCCCTCCGTCCCTCCCACCCTCAAAGCCCTCCACCAGGAAGGGTATAAA
GTTGTCATCATCTCAAACCAACGAGGCATAGAGAGCAAGAACACCGACCT
TTCCTCCCTCCTTCAGCGCCTCGCCTCTGTGGTTTCCGCCTTGAAGATCC
CAGAAATCGAAGGATATTTTGCCACGCATCACAGCGTATTCTATAAACCG
GCCCCAGGGAGTTGGTATCTGCTGGAGGAGAAGTATAGAGGAGGAGGGGG
GGGGAGAAAGGAAGGAGGAGGGGAGGAGGGGATTGATACAGCAAATAGTT
TTTTCGTGGGCGACGCGGCAGGGCGGCCGAAACAGGGCAAGATGAGGGGG
AGGGATCACAGTGACAGTGATCTGAAATTAGCGGTAAATGTGGGAGGGAT
AGGGTTCAAGACCCCGGAGGAATTCTTTTTGGGAAGTAGGCTGAGCTGTG
ATAAAGGAGAGGTCAATGGGAGCACCGGCCTTCCCTCCTCAACTTTGTCC
ACAGGAGAGCATGGACAATCCGTCACCCCTCCCTCCGTCCCTCCCTCCGT
CCCTCCCTCGCCTCCGACGCGCCAAGAAGCCGTCCTTCTTCTCGGCCCCC
CCGCCTGTGGGAAGTCCACTTACTGCCACATCCACCTCCCCCACCACACC
CGCATAAACCAAGATACGCTCAAGTCCCTAAACAAATGCCAACGTGCCGC
TTTGGAAGCCCTGGAGAAAGGAGAGAGCATCGTCATCGACGCCACGAATG
CCACGTCCAAGCTCCGGAAGCAATGGGTGCACCTCCTACGCTCCTGCCCC
TTGCCCTCCCTCCCTTCCTCCTCCTCCTCCTCGACCTTTCTTCTTCTCAA
GGTTGTGGAGTTCCTCCCTCCTAAGGTAGCCACCATACACCTTAATTTCT
TTCGAGGCATTAACCTAGACGCGACTGCTGTGGAAGGGAGGGAGGGAGGG
AGAGCAGAAGGGGCCGACTTTCTCCGCTGTGTACCTGAGAGGGTGATTCA
CTCATTCTTTAAATTTATCGAGCCTGTGAAAGAGGACGGAGGGAAGGAGG
AAGGATTCGAGGAGCACGTGCAGGTAAAGGAGTTGGTGTTGAAGCCATTT
AGAAACCGGAGGGAAGCGCATTTGTTTGGGTGTTATTTGCCATCCATCCG
GTAGTCAGGACGTCATACATGCATGATGTTGCTCGCCCTTACCCCCTACT
GCCACCTCTGAGGAAAGGTTGAAGCCAAATAGAAGGAGACAAGAGGGCAT
GCTATACTCCTCTACTAGCTGGAAAAGTAAATCGAACGGAAATAGCAAAA
GACATGAGGC
back to top

protein sequence of jgi.p|Nanoce1779_2|557912

>mRNA_6925-protein ID=mRNA_6925-protein|Name=jgi.p|Nanoce1779_2|557912|organism=Nannochloropsis oceanica|type=polypeptide|length=468bp
MYDVGLLHLRVHPAAAAAAAAAAASINYNTESIPESCTSPVSSPPPAPPS
FPIRIAAFDLDSTLIKTRSQKSFAASPTDWQWFHPSVPPTLKALHQEGYK
VVIISNQRGIESKNTDLSSLLQRLASVVSALKIPEIEGYFATHHSVFYKP
APGSWYLLEEKYRGGGGGRKEGGGEEGIDTANSFFVGDAAGRPKQGKMRG
RDHSDSDLKLAVNVGGIGFKTPEEFFLGSRLSCDKGEVNGSTGLPSSTLS
TGEHGQSVTPPSVPPSVPPSPPTRQEAVLLLGPPACGKSTYCHIHLPHHT
RINQDTLKSLNKCQRAALEALEKGESIVIDATNATSKLRKQWVHLLRSCP
LPSLPSSSSSSTFLLLKVVEFLPPKVATIHLNFFRGINLDATAVEGREGG
RAEGADFLRCVPERVIHSFFKFIEPVKEDGGKEEGFEEHVQVKELVLKPF
RNRREAHLFGCYLPSIR*
back to top

mRNA from alignment at scaffold_17:442621..444267-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6925 ID=mRNA_6925|Name=jgi.p|Nanoce1779_2|557912|organism=Nannochloropsis oceanica|type=mRNA|length=1647bp|location=Sequence derived from alignment at scaffold_17:442621..444267- (Nannochloropsis oceanica)
ATGTACGACGTGGGCCTCTTGCATCTTCGAGTCCATCCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCCTCAATCAATTACAACACTGAATCCATTC
CTGAGTCCTGCACTTCCCCTGTTTCGTCCCCTCCCCCTGCCCCACCTTCA
TTCCCCATACGTATCGCCGCTTTTGACCTAGACTCAACCCTCATCAAAAC
CCGCTCGCAAAAATCCTTCGCCGCCTCTCCCACGGACTGGCAATGGTTCC
ATCCCTCCGTCCCTCCCACCCTCAAAGCCCTCCACCAGGAAGGGTATAAA
GTTGTCATCATCTCAAACCAACGAGGCATAGAGAGCAAGAACACCGACCT
TTCCTCCCTCCTTCAGCGCCTCGCCTCTGTGGTTTCCGCCTTGAAGATCC
CAGAAATCGAAGGATATTTTGCCACGCATCACAGCGTATTCTATAAACCG
GCCCCAGGGAGTTGGTATCTGCTGGAGGAGAAGTATAGAGGAGGAGGGGG
GGGGAGAAAGGAAGGAGGAGGGGAGGAGGGGATTGATACAGCAAATAGTT
TTTTCGTGGGCGACGCGGCAGGGCGGCCGAAACAGGGCAAGATGAGGGGG
AGGGATCACAGTGACAGTGATCTGAAATTAGCGGTAAATGTGGGAGGGAT
AGGGTTCAAGACCCCGGAGGAATTCTTTTTGGGAAGTAGGCTGAGCTGTG
ATAAAGGAGAGGTGTTGAAGGCGGCGATTGAGAGGGAGAGGAGGAGCGCG
GTGGAGGAGTATGTGGTCGTGAGAAGGAAGGGATCCGGCTGTAGGACCAG
CAATGGGAGCACCGGCCTTCCCTCCTCAACTTTGTCCACAGGAGAGCATG
GACAATCCGTCACCCCTCCCTCCGTCCCTCCCTCCGTCCCTCCCTCGCCT
CCGACGCGCCAAGAAGCCGTCCTTCTTCTCGGCCCCCCCGCCTGTGGGAA
GTCCACTTACTGCCACATCCACCTCCCCCACCACACCCGCATAAACCAAG
ATACGCTCAAGTCCCTAAACAAATGCCAACGTGCCGCTTTGGAAGCCCTG
GAGAAAGGAGAGAGCATCGTCATCGACGCCACGAATGCCACGTCCAAGCT
CCGGAAGCAATGGGTGCACCTCCTACGCTCCTGCCCCTTGCCCTCCCTCC
CTTCCTCCTCCTCCTCCTCGACCTTTCTTCTTCTCAAGGTTGTGGAGTTC
CTCCCTCCTAAGGTAGCCACCATACACCTTAATTTCTTTCGAGGCATTAA
CCTAGACGCGACTGCTGTGGAAGGGAGGGAGGGAGGGAGAGCAGAAGGGG
CCGACTTTCTCCGCTGTGTACCTGAGAGGGTGATTCACTCATTCTTTAAA
TTTATCGAGCCTGTGAAAGAGGACGGAGGGAAGGAGGAAGGATTCGAGGA
GCACGTGCAGGTAAAGGAGTTGGTGTTGAAGCCATTTAGAAACCGGAGGG
AAGCGCATTTGTTTGGGTGTTATTTGCCATCCATCCGGTAGTCAGGACGT
CATACATGCATGATGTTGCTCGCCCTTACCCCCTACTGCCACCTCTGAGG
AAAGGTTGAAGCCAAATAGAAGGAGACAAGAGGGCATGCTATACTCCTCT
ACTAGCTGGAAAAGTAAATCGAACGGAAATAGCAAAAGACATGAGGC
back to top

Coding sequence (CDS) from alignment at scaffold_17:442621..444267-

>mRNA_6925 ID=mRNA_6925|Name=jgi.p|Nanoce1779_2|557912|organism=Nannochloropsis oceanica|type=CDS|length=2808bp|location=Sequence derived from alignment at scaffold_17:442621..444267- (Nannochloropsis oceanica)
CAATGGGAGCACCGGCCTTCCCTCCTCAACTTTGTCCACAGGAGAGCATG
GACAATCCGTCACCCCTCCCTCCGTCCCTCCCTCCGTCCCTCCCTCGCCT
CCGACGCGCCAAGAAGCCGTCCTTCTTCTCGGCCCCCCCGCCTGTGGGAA
GTCCACTTACTGCCACATCCACCTCCCCCACCACACCCGCATAAACCAAG
ATACGCTCAAGTCCCTAAACAAATGCCAACGTGCCGCTTTGGAAGCCCTG
GAGAAAGGAGAGAGCATCGTCATCGACGCCACGAATGCCACGTCCAAGCT
CCGGAAGCAATGGGTGCACCTCCTACGCTCCTGCCCCTTGCCCTCCCTCC
CTTCCTCCTCCTCCTCCTCGACCTTTCTTCTTCTCAAGGTTGTGGAGTTC
CTCCCTCCTAAGGTAGCCACCATACACCTTAATTTCTTTCGAGGCATTAA
CCTAGACGCGACTGCTGTGGAAGGGAGGGAGGGAGGGAGAGCAGAAGGGG
CCGACTTTCTCCGCTGTGTACCTGAGAGGGTGATTCACTCATTCTTTAAA
TTTATCGAGCCTGTGAAAGAGGACGGAGGGAAGGAGGAAGGATTCGAGGA
GCACGTGCAGGTAAAGGAGTTGGTGTTGAAGCCATTTAGAAACCGGAGGG
AAGCGCATTTGTTTGGGTGTTATTTGCCATCCATCCGGTAGATGTACGAC
GTGGGCCTCTTGCATCTTCGAGTCCATCCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCCTCAATCAATTACAACACTGAATCCATTCCTGAGTCCT
GCACTTCCCCTGTTTCGTCCCCTCCCCCTGCCCCACCTTCATTCCCCATA
CGTATCGCCGCTTTTGACCTAGACTCAACCCTCATCAAAACCCGCTCGCA
AAAATCCTTCGCCGCCTCTCCCACGGACTGGCAATGGTTCCATCCCTCCG
TCCCTCCCACCCTCAAAGCCCTCCACCAGGAAGGGTATAAAGTTGTCATC
ATCTCAAACCAACGAGGCATAGAGAGCAAGAACACCGACCTTTCCTCCCT
CCTTCAGCGCCTCGCCTCTGTGGTTTCCGCCTTGAAGATCCCAGAAATCG
AAGGATATTTTGCCACGCATCACAGCGTATTCTATAAACCGGCCCCAGGG
AGTTGGTATCTGCTGGAGGAGAAGTATAGAGGAGGAGGGGGGGGGAGAAA
GGAAGGAGGAGGGGAGGAGGGGATTGATACAGCAAATAGTTTTTTCGTGG
GCGACGCGGCAGGGCGGCCGAAACAGGGCAAGATGAGGGGGAGGGATCAC
AGTGACAGTGATCTGAAATTAGCGGTAAATGTGGGAGGGATAGGGTTCAA
GACCCCGGAGGAATTCTTTTTGGGAAGTAGGCTGAGCTGTGATAAAGGAG
AGGTCAATGGGAGCACCGGCCTTCCCTCCTCAACTTTGTCCACAGGAGAG
CATGGACAATCCGTCACCCCTCCCTCCGTCCCTCCCTCCGTCCCTCCCTC
GCCTCCGACGCGCCAAGAAGCCGTCCTTCTTCTCGGCCCCCCCGCCTGTG
GGAAGTCCACTTACTGCCACATCCACCTCCCCCACCACACCCGCATAAAC
CAAGATACGCTCAAGTCCCTAAACAAATGCCAACGTGCCGCTTTGGAAGC
CCTGGAGAAAGGAGAGAGCATCGTCATCGACGCCACGAATGCCACGTCCA
AGCTCCGGAAGCAATGGGTGCACCTCCTACGCTCCTGCCCCTTGCCCTCC
CTCCCTTCCTCCTCCTCCTCCTCGACCTTTCTTCTTCTCAAGGTTGTGGA
GTTCCTCCCTCCTAAGGTAGCCACCATACACCTTAATTTCTTTCGAGGCA
TTAACCTAGACGCGACTGCTGTGGAAGGGAGGGAGGGAGGGAGAGCAGAA
GGGGCCGACTTTCTCCGCTGTGTACCTGAGAGGGTGATTCACTCATTCTT
TAAATTTATCGAGCCTGTGAAAGAGGACGGAGGGAAGGAGGAAGGATTCG
AGGAGCACGTGCAGGTAAAGGAGTTGGTGTTGAAGCCATTTAGAAACCGG
AGGGAAGCGCATTTGTTTGGGTGTTATTTGCCATCCATCCGGTAGATGTA
CGACGTGGGCCTCTTGCATCTTCGAGTCCATCCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCCTCAATCAATTACAACACTGAATCCATTCCTGAG
TCCTGCACTTCCCCTGTTTCGTCCCCTCCCCCTGCCCCACCTTCATTCCC
CATACGTATCGCCGCTTTTGACCTAGACTCAACCCTCATCAAAACCCGCT
CGCAAAAATCCTTCGCCGCCTCTCCCACGGACTGGCAATGGTTCCATCCC
TCCGTCCCTCCCACCCTCAAAGCCCTCCACCAGGAAGGGTATAAAGTTGT
CATCATCTCAAACCAACGAGGCATAGAGAGCAAGAACACCGACCTTTCCT
CCCTCCTTCAGCGCCTCGCCTCTGTGGTTTCCGCCTTGAAGATCCCAGAA
ATCGAAGGATATTTTGCCACGCATCACAGCGTATTCTATAAACCGGCCCC
AGGGAGTTGGTATCTGCTGGAGGAGAAGTATAGAGGAGGAGGGGGGGGGA
GAAAGGAAGGAGGAGGGGAGGAGGGGATTGATACAGCAAATAGTTTTTTC
GTGGGCGACGCGGCAGGGCGGCCGAAACAGGGCAAGATGAGGGGGAGGGA
TCACAGTGACAGTGATCTGAAATTAGCGGTAAATGTGGGAGGGATAGGGT
TCAAGACCCCGGAGGAATTCTTTTTGGGAAGTAGGCTGAGCTGTGATAAA
GGAGAGGT
back to top
Synonyms
Publications