jgi.p|Nanoce1779_2|557911, mRNA_6924 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|557911
Unique Name	mRNA_6924
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1743
Alignment location	scaffold_17:440427..442286 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	557997
Track	FilteredModels2
ProteinId	557911

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:440427..442286 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|557911	gene_6924	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|557911	mRNA_6924-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6924	CDS_6924	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:440427..442286+
coding sequence from alignment at scaffold_17:440427..442286+

mRNA sequence

>mRNA_6924 ID=mRNA_6924|Name=jgi.p|Nanoce1779_2|557911|organism=Nannochloropsis oceanica|type=mRNA|length=1743bp
AGCAGTAGTAGCAGCAGTAGCAGCAGCAGTAAAAGCAACAACAGTAATAA
CATCATCAACAAATACAGCAGCAGCAGCACCACCACCACCACCACCAGCA
GCACGAGCATACCCTTCCCTCCCCCTCCTTCCCTTCCCCGTGCATGTCCC
GCAGCAGCGGTGCCACCAACGCATGCACGTGTCCCTCCTCCTCCTCCTCC
TCGCCGTCCCTTTCTCCGCTCCCAAAGCATGAGCAGCGGGCCTTCCCATT
TGCTCTCCTCCTCGTCCTCCTCCTCCTCCTTTCCCAAGCATCCCCCACTC
CTCACGGGAAACGACCGTTTTTATCACCCGGCGTTGCGACGGAAGGGGAG
TAAAAGCATGACTTCTGCCGTTGCCATGGGTCTGGGTCGGAATGGAAAGT
GGGGAGGAGGAGGGATGGGCGACAGTGCTCCTTTGGACTCCTCCCTGTCG
TCTTCCTCCACGTTGCGTGAGCCTATTCCCTCCTTGGGCGCGATGAAGAA
TCATTTTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCTTCTT
CTTATTCCTTCTTAGCTGCCTCGCGGCGCTCGATGTCCTTTACGGCCGGC
GCCAATGCCAAGAGCAAGCACAACCCTCCCGCCCTCTCTCGCCGCCTTTC
CCTCGTCGAGCTCCTGCAGCCCCGCGACGACTACACCTACCATCCTTCCT
CCTCATCGCCCCCCCTCCCTCCCCGGCTTATGCCCATGATCAGTAATGGC
ATGGTCCGCTTGGCGATCAACATGAAAGAGGCCCACCTAACCCCAGCAGT
GTGGGATGTATGTCTCTCTCTCTTCTCCCCTGATGATGCCGCGAAGATAA
AGAGGTATCGATTCGACAAGGACAGGAGACTGGCCCTCGGGAGTCAATTG
CTGCAGAGGGCGGTGATTGCATGGACATTTGGGGTTGATTATAAGGAAAT
TGTGATCTCTCGGACAGAGAAGGGGAAACCGTTTTATAACTACAAGCATC
TGACGGAGTGCAGGGAGGGTGGGAGGGAAGGAGGGGTGCCGTTTCCGAAT
TGGAACTACAACGTGAGTCATCATGGGGACTATGTGGGGATAGCCTCCGA
GCCTGTGTGCTTGGTAGGCCTCGATATTATGAATGCGAAGGAAAAACCGC
GCGGGGGAGGCGGCGGGGGAGGGGGAGGGATGGTGAAGGAAAAAAGTGCG
AATGATTTCTTCAAGAGCTTCCACCGGCAGCTGAGTGCGAATGAGTGGGG
ATCCATTTATGAGGCGGAGGACGAGGAGAGGAAACTAGAGAGGTTTTATC
GGCAGTGGGCGTTGAAGGAAGCGTACATCAAGGCCATTGGTAGCGGCCTC
TCCTTCTCCCCCCGTCGGATTGAGATCACGGGGTTGGATCACAGGGAACG
TCCTAACAGCGAGGTCGCCTACGACCCCTCCATCTTAAGGATCGATGGCC
GTGAGCGACCGAATTGGAAATTTAAATTTACCGGCTTGGATAATGGTCAC
GTGGCGTGTGTGTCACGGGGGCCGCCTTCGGATGCGATTGAGGGGTATAG
GCAGCATTTGCTGGAGACGGTGTTGCCCAACAGTCCCCTTCAATACGGCT
TGGAGAGCGTACAGCCGGAATTTGACTCGATTACGGTCAGGGAGTTGATT
CCGGAGGAGCGGCTCGTAGAGTTTGATAGGGCGGTGGGAGGGGGAGGGAG
GGAGGGAGGGCGGGTACTGGCGGGATTGGCCGAGGAGCCTTAG

protein sequence of jgi.p|Nanoce1779_2|557911

>mRNA_6924-protein ID=mRNA_6924-protein|Name=jgi.p|Nanoce1779_2|557911|organism=Nannochloropsis oceanica|type=polypeptide|length=505bp
MSSGPSHLLSSSSSSSSFPKHPPLLTGNDRFYHPALRRKGSKSMTSAVAM
GLGRNGKWGGGGMGDSAPLDSSLSSSSTLREPIPSLGAMKNHFSSSSSSS
SSSSSSSSYSFLAASRRSMSFTAGANAKSKHNPPALSRRLSLVELLQPRD
DYTYHPSSSSPPLPPRLMPMISNGMVRLAINMKEAHLTPAVWDVCLSLFS
PDDAAKIKRYRFDKDRRLALGSQLLQRAVIAWTFGVDYKEIVISRTEKGK
PFYNYKHLTECREGGREGGVPFPNWNYNVSHHGDYVGIASEPVCLVGLDI
MNAKEKPRGGGGGGGGGMVKEKSANDFFKSFHRQLSANEWGSIYEAEDEE
RKLERFYRQWALKEAYIKAIGSGLSFSPRRIEITGLDHRERPNSEVAYDP
SILRIDGRERPNWKFKFTGLDNGHVACVSRGPPSDAIEGYRQHLLETVLP
NSPLQYGLESVQPEFDSITVRELIPEERLVEFDRAVGGGGREGGRVLAGL
AEEP*

mRNA from alignment at scaffold_17:440427..442286+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6924 ID=mRNA_6924|Name=jgi.p|Nanoce1779_2|557911|organism=Nannochloropsis oceanica|type=mRNA|length=1860bp|location=Sequence derived from alignment at scaffold_17:440427..442286+ (Nannochloropsis oceanica)
AGCAGTAGTAGCAGCAGTAGCAGCAGCAGTAAAAGCAACAACAGTAATAA
CATCATCAACAAATACAGCAGCAGCAGCACCACCACCACCACCACCAGCA
GCACGAGCATACCCTTCCCTCCCCCTCCTTCCCTTCCCCGTGCATGTCCC
GCAGCAGCGGTGCCACCAACGCATGCACGTGTCCCTCCTCCTCCTCCTCC
TCGCCGTCCCTTTCTCCGCTCCCAAAGCATGAGCAGCGGGCCTTCCCATT
TGCTCTCCTCCTCGTCCTCCTCCTCCTCCTTTCCCAAGCATCCCCCACTC
CTCACGGGAAACGACCGTTTTTATCACCCGGCGTTGCGACGGAAGGGGAG
TAAAAGCATGACTTCTGCCGTTGCCATGGGTCTGGGTCGGAATGGAAAGT
GGGGAGGAGGAGGGATGGGCGACAGTGCTCCTTTGGACTCCTCCCTGTCG
TCTTCCTCCACGTTGCGTGAGCCTATTCCCTCCTTGGGCGCGATGAAGAA
TCATTTTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCTTCTT
CTTATTCCTTCTTAGCTGCCTCGCGGCGCTCGATGTCCTTTACGGCCGGC
GCCAATGCCAAGAGCAAGCACAACCCTCCCGCCCTCTCTCGCCGCCTTTC
CCTCGTCGAGCTCCTGCAGCCCCGCGACGACTACACCTACCATCCTTCCT
CCTCATCGCCCCCCCTCCCTCCCCGGCTTATGCCCATGATCAGTAATGGC
ATGGTCCGCTTGGCGATCAACATGAAAGAGGCCCACCTAACCCCAGCAGT
GTGGGATGTATGTCTCTCTCTCTTCTCCCCTGATGATGCCGCGAAGATAA
AGAGGTATCGATTCGACAAGGACAGGAGACTGGCCCTCGGGAGTCAATTG
CTGCAGAGGGCGGTGATTGCATGGACATTTGGGGTTGATTATAAGGAAAT
TGTGATCTCTCGGACAGAGAAGGGGAAACCGTTTTATAACTACAAGCATC
TGACGGAGTGCAGGGAGGGTGGGAGGGAAGGAGGGGTGCCGTTTCCGAAT
TGGAACTACAACGTGAGTCATCATGGGGACTATGTGGGGATAGCCTCCGA
GCCTGTGTGCTTGGTAGGCCTCGATATTATGAATGCGAAGGAAAAACCGC
GCGGGGGAGGCGGCGGGGGAGGGGGAGGGATGGTGAAGGAAAAAAGTGCG
AATGATTTCTTCAAGAGCTTCCACCGGCAGCTGAGTGCGAATGAGTGGGG
ATCCATTTATGAGGCGGAGGACGAGGAGAGGAAACTAGAGAGGTTTTATC
GGCAGTGGGCGTTGAAGGTAGGTAGGGAGGGAGGGAGGGAAAGGAAGGGC
GGGGGGAGGGAAAAGATGACTGCTTAGATAAAGACTTCTTACTTGCCCCT
CCCTTCTCCCCTCCCTCCCCTCTCTCCATCACAGGAAGCGTACATCAAGG
CCATTGGTAGCGGCCTCTCCTTCTCCCCCCGTCGGATTGAGATCACGGGG
TTGGATCACAGGGAACGTCCTAACAGCGAGGTCGCCTACGACCCCTCCAT
CTTAAGGATCGATGGCCGTGAGCGACCGAATTGGAAATTTAAATTTACCG
GCTTGGATAATGGTCACGTGGCGTGTGTGTCACGGGGGCCGCCTTCGGAT
GCGATTGAGGGGTATAGGCAGCATTTGCTGGAGACGGTGTTGCCCAACAG
TCCCCTTCAATACGGCTTGGAGAGCGTACAGCCGGAATTTGACTCGATTA
CGGTCAGGGAGTTGATTCCGGAGGAGCGGCTCGTAGAGTTTGATAGGGCG
GTGGGAGGGGGAGGGAGGGAGGGAGGGCGGGTACTGGCGGGATTGGCCGA
GGAGCCTTAG

Coding sequence (CDS) from alignment at scaffold_17:440427..442286+

>mRNA_6924 ID=mRNA_6924|Name=jgi.p|Nanoce1779_2|557911|organism=Nannochloropsis oceanica|type=CDS|length=3030bp|location=Sequence derived from alignment at scaffold_17:440427..442286+ (Nannochloropsis oceanica)
ATGAGCAGCGGGCCTTCCCATTTGCTCTCCTCCTCGTCCTCCTCCTCCTC
CTTTCCCAAGCATCCCCCACTCCTCACGGGAAACGACCGTTTTTATCACC
CGGCGTTGCGACGGAAGGGGAGTAAAAGCATGACTTCTGCCGTTGCCATG
GGTCTGGGTCGGAATGGAAAGTGGGGAGGAGGAGGGATGGGCGACAGTGC
TCCTTTGGACTCCTCCCTGTCGTCTTCCTCCACGTTGCGTGAGCCTATTC
CCTCCTTGGGCGCGATGAAGAATCATTTTTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCTTCCTCTTCTTCTTATTCCTTCTTAGCTGCCTCGCGGCG
CTCGATGTCCTTTACGGCCGGCGCCAATGCCAAGAGCAAGCACAACCCTC
CCGCCCTCTCTCGCCGCCTTTCCCTCGTCGAGCTCCTGCAGCCCCGCGAC
GACTACACCTACCATCCTTCCTCCTCATCGCCCCCCCTCCCTCCCCGGCT
TATGCCCATGATCAGTAATGGCATGGTCCGCTTGGCGATCAACATGAAAG
AGGCCCACCTAACCCCAGCAGTGTGGGATGTATGTCTCTCTCTCTTCTCC
CCTGATGATGCCGCGAAGATAAAGAGGTATCGATTCGACAAGGACAGGAG
ACTGGCCCTCGGGAGTCAATTGCTGCAGAGGGCGGTGATTGCATGGACAT
TTGGGGTTGATTATAAGGAAATTGTGATCTCTCGGACAGAGAAGGGGAAA
CCGTTTTATAACTACAAGCATCTGACGGAGTGCAGGGAGGGTGGGAGGGA
AGGAGGGGTGCCGTTTCCGAATTGGAACTACAACGTGAGTCATCATGGGG
ACTATGTGGGGATAGCCTCCGAGCCTGTGTGCTTGGTAGGCCTCGATATT
ATGAATGCGAAGGAAAAACCGCGCGGGGGAGGCGGCGGGGGAGGGGGAGG
GATGGTGAAGGAAAAAAGTGCGAATGATTTCTTCAAGAGCTTCCACCGGC
AGCTGAGTGCGAATGAGTGGGGATCCATTTATGAGGCGGAGGACGAGGAG
AGGAAACTAGAGAGGTTTTATCGGCAGTGGGCGTTGAAGGAAGCGTACAT
CAAGGCCATTGGTAGCGGCCTCTCCTTCTCCCCCCGTCGGATTGAGATCA
CGGGGTTGGATCACAGGGAACGTCCTAACAGCGAGGTCGCCTACGACCCC
TCCATCTTAAGGATCGATGGCCGTGAGCGACCGAATTGGAAATTTAAATT
TACCGGCTTGGATAATGGTCACGTGGCGTGTGTGTCACGGGGGCCGCCTT
CGGATGCGATTGAGGGGTATAGGCAGCATTTGCTGGAGACGGTGTTGCCC
AACAGTCCCCTTCAATACGGCTTGGAGAGCGTACAGCCGGAATTTGACTC
GATTACGGTCAGGGAGTTGATTCCGGAGGAGCGGCTCGTAGAGTTTGATA
GGGCGGTGGGAGGGGGAGGGAGGGAGGGAGGGCGGGTACTGGCGGGATTG
GCCGAGGAGCCTTAGATGAGCAGCGGGCCTTCCCATTTGCTCTCCTCCTC
GTCCTCCTCCTCCTCCTTTCCCAAGCATCCCCCACTCCTCACGGGAAACG
ACCGTTTTTATCACCCGGCGTTGCGACGGAAGGGGAGTAAAAGCATGACT
TCTGCCGTTGCCATGGGTCTGGGTCGGAATGGAAAGTGGGGAGGAGGAGG
GATGGGCGACAGTGCTCCTTTGGACTCCTCCCTGTCGTCTTCCTCCACGT
TGCGTGAGCCTATTCCCTCCTTGGGCGCGATGAAGAATCATTTTTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCTTCTTCTTATTCCTTCTT
AGCTGCCTCGCGGCGCTCGATGTCCTTTACGGCCGGCGCCAATGCCAAGA
GCAAGCACAACCCTCCCGCCCTCTCTCGCCGCCTTTCCCTCGTCGAGCTC
CTGCAGCCCCGCGACGACTACACCTACCATCCTTCCTCCTCATCGCCCCC
CCTCCCTCCCCGGCTTATGCCCATGATCAGTAATGGCATGGTCCGCTTGG
CGATCAACATGAAAGAGGCCCACCTAACCCCAGCAGTGTGGGATGTATGT
CTCTCTCTCTTCTCCCCTGATGATGCCGCGAAGATAAAGAGGTATCGATT
CGACAAGGACAGGAGACTGGCCCTCGGGAGTCAATTGCTGCAGAGGGCGG
TGATTGCATGGACATTTGGGGTTGATTATAAGGAAATTGTGATCTCTCGG
ACAGAGAAGGGGAAACCGTTTTATAACTACAAGCATCTGACGGAGTGCAG
GGAGGGTGGGAGGGAAGGAGGGGTGCCGTTTCCGAATTGGAACTACAACG
TGAGTCATCATGGGGACTATGTGGGGATAGCCTCCGAGCCTGTGTGCTTG
GTAGGCCTCGATATTATGAATGCGAAGGAAAAACCGCGCGGGGGAGGCGG
CGGGGGAGGGGGAGGGATGGTGAAGGAAAAAAGTGCGAATGATTTCTTCA
AGAGCTTCCACCGGCAGCTGAGTGCGAATGAGTGGGGATCCATTTATGAG
GCGGAGGACGAGGAGAGGAAACTAGAGAGGTTTTATCGGCAGTGGGCGTT
GAAGGAAGCGTACATCAAGGCCATTGGTAGCGGCCTCTCCTTCTCCCCCC
GTCGGATTGAGATCACGGGGTTGGATCACAGGGAACGTCCTAACAGCGAG
GTCGCCTACGACCCCTCCATCTTAAGGATCGATGGCCGTGAGCGACCGAA
TTGGAAATTTAAATTTACCGGCTTGGATAATGGTCACGTGGCGTGTGTGT
CACGGGGGCCGCCTTCGGATGCGATTGAGGGGTATAGGCAGCATTTGCTG
GAGACGGTGTTGCCCAACAGTCCCCTTCAATACGGCTTGGAGAGCGTACA
GCCGGAATTTGACTCGATTACGGTCAGGGAGTTGATTCCGGAGGAGCGGC
TCGTAGAGTTTGATAGGGCGGTGGGAGGGGGAGGGAGGGAGGGAGGGCGG
GTACTGGCGGGATTGGCCGAGGAGCCTTAG

Synonyms

Publications