jgi.p|Nanoce1779_2|596790, mRNA_6923 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596790
Unique NamemRNA_6923
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length858
Alignment locationscaffold_17:437228..438726 -

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Properties
Property NameValue
TranscriptId596876
TrackFilteredModels2
ProteinId596790
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:437228..438726 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596790gene_6923Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596790mRNA_6923-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6923CDS_6923Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6923 ID=mRNA_6923|Name=jgi.p|Nanoce1779_2|596790|organism=Nannochloropsis oceanica|type=mRNA|length=858bp
ACAGGACACTTATTCCACTGCTTGCCCTGCACCGTTAATTAATCTGCCCT
CTGCCGCCTTTTCATAATCATGTTGGAGGCCTGGTACATGGACGACGACC
CCACAGTGGACCAGCGGGAGGAGCACCGGCTGAATCCGAATAAGCCCGCA
TCATTGGAGGTGCTCCAGAAGCTGGGCGTATTGTATTGGACGTTTGACGC
CGATACGTACAAGGAAAACCCTAAGTTTGCGGCAATGCGGGTAGAACGGG
GCTATGATTATGAGGATACATGCACGGTCTCAAGGGAAACGATGCCAAAT
TACGACGAAAAGATCAAGAGCTTCTTCGAAGAGCATATTCATTCGGACGA
GGAGATCCGCTACTGCTTGGACGGATCTGGGTATTTTGACGTGCGGGACG
GGCAAGACCGTTGGATTCGAGTCAAGGTGGAGAAGAACGACTTGATCGTT
CTGCCGGAAGGCATTTACCACCGGTTCACCCTCGACACGAAGAATTATAT
CAAGGCCCTTCGTCTGTTTAAGGGCACGCCGGTTTGGACGCCCTACAACA
GGCCGCAGGAGAATCACCCTAGCCGTACCAAGTACGCTCAAGGTTTCCTG
CAAATGGCGGCTTAAGTTGAAGGATATTTGTCGCGGAATTGAGTTGAAGG
ATGATCGTTGCATTATGAGGGAGCTGTGGATATTTTTGGGGTCCCTGAAT
GCGCGTGAGAAGCTGTCGGAATAAAAGACCGAAGTGCTAGAGGGCGGACT
AGGTTTACCCCTACCTGTCGACCTCCCTTTCTGTCCGGTCCTCGCTGCTT
GAATAGTGAGTTATAGAACACGAAAACAACTGATAAAGACCTGAGGACGA
CAAAAAAC
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protein sequence of jgi.p|Nanoce1779_2|596790

>mRNA_6923-protein ID=mRNA_6923-protein|Name=jgi.p|Nanoce1779_2|596790|organism=Nannochloropsis oceanica|type=polypeptide|length=182bp
MLEAWYMDDDPTVDQREEHRLNPNKPASLEVLQKLGVLYWTFDADTYKEN
PKFAAMRVERGYDYEDTCTVSRETMPNYDEKIKSFFEEHIHSDEEIRYCL
DGSGYFDVRDGQDRWIRVKVEKNDLIVLPEGIYHRFTLDTKNYIKALRLF
KGTPVWTPYNRPQENHPSRTKYAQGFLQMAA*
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mRNA from alignment at scaffold_17:437228..438726-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6923 ID=mRNA_6923|Name=jgi.p|Nanoce1779_2|596790|organism=Nannochloropsis oceanica|type=mRNA|length=1499bp|location=Sequence derived from alignment at scaffold_17:437228..438726- (Nannochloropsis oceanica)
ACAGGACACTTATTCCACTGCTTGCCCTGCACCGTTAATTAATCTGCCCT
CTGCCGCCTTTTCATAATCATGTTGGAGGCCTGGTACATGGACGACGACC
CCACAGTGGACCAGCGGGAGGAGCACCGGCTGAATCCGAATAAGCCCGCA
TCATTGGAGGTGCTCCAGAAGCTGGGCGTATTGTATTGGACGTTTGACGC
CGATACGTACAAGGAAAACCCTAAGTTTGCGGTGCGTGGAGGGAAAGGGA
GGGAAGGGAGAGGGAAGGGAGGAATCTGTAGGGTTTGGTTGAGTCTGCGC
GCTCCAGTTATTGCCACAATTGAAAATGATGTATAGGGATTTAAATATGA
TGTTGAGCGTGCATAAGTTCCCTTGGGCCCGGATCGTGCCCTGTGAGGAA
TTGATGACGGTGAGACGATGCACGTTTATGCTCCTGTCTGTTCTCACATA
CATCTTCTCCGGTATACCAATTCGAATGCAGGCAATGCGGGTAGAACGGG
GCTATGATTATGAGGATACATGCACGGTCTCAAGGGAAACGATGCCAAAT
TACGACGAAAAGATCAAGAGCTTCTTCGAAGAGCATATTCATTCGGACGA
GGTACGTCGAGCACAGGAGGCCTCAGGGGAGGGGAATCGAGGGCGGACAA
GTTAATGGTGCGACGACGAAATGCGGGCAGGAAAATGACGAAAACTAAGC
ACAATTACGCGAGAAGATAGAAAATTAATGGTGGGATACATTTCTTAGAC
GACATGCATTTATTGATAATAAGTCGAGTCGACTTTCTTTTTCTTTTCAC
CTTTCAACTCACCCACTAATACCCATCCCCTCTACTCACAACCCTTTCAA
AGGAGATCCGCTACTGCTTGGACGGATCTGGGTATTTTGACGTGCGGGAC
GGGCAAGACCGTTGGATTCGAGTCAAGGTGGAGAAGAACGACTTGATCGT
TCTGCCGGAAGGCATTTACCACCGGTTCACCCTCGACACGAAGAATTATA
TCAAGGCCCTTCGTCTGTTTAAGGGCACGCCGGTTTGGACGCCCTACAAC
AGGTACGAATGCGTGTGCGTATACACGTTCACAATTGTCTTTGGGAGATA
TTGAGACTATTTTATCGCTTTGCGGAGCGTAGTTTTCGGTTTTTCATATC
ACCTCGCGACTCGATAACTTCCACATGGTAATTAATGCACAGGCCGCAGG
AGAATCACCCTAGCCGTACCAAGTACGCTCAAGGTTTCCTGCAAATGGCG
GCTTAAGTTGAAGGATATTTGTCGCGGAATTGAGTTGAAGGATGATCGTT
GCATTATGAGGGAGCTGTGGATATTTTTGGGGTCCCTGAATGCGCGTGAG
AAGCTGTCGGAATAAAAGACCGAAGTGCTAGAGGGCGGACTAGGTTTACC
CCTACCTGTCGACCTCCCTTTCTGTCCGGTCCTCGCTGCTTGAATAGTGA
GTTATAGAACACGAAAACAACTGATAAAGACCTGAGGACGACAAAAAAC
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Coding sequence (CDS) from alignment at scaffold_17:437228..438726-

>mRNA_6923 ID=mRNA_6923|Name=jgi.p|Nanoce1779_2|596790|organism=Nannochloropsis oceanica|type=CDS|length=2184bp|location=Sequence derived from alignment at scaffold_17:437228..438726- (Nannochloropsis oceanica)
GCCGCAGGAGAATCACCCTAGCCGTACCAAGTACGCTCAAGGTTTCCTGC
AAATGGCGGCTTAAGAGATCCGCTACTGCTTGGACGGATCTGGGTATTTT
GACGTGCGGGACGGGCAAGACCGTTGGATTCGAGTCAAGGTGGAGAAGAA
CGACTTGATCGTTCTGCCGGAAGGCATTTACCACCGGTTCACCCTCGACA
CGAAGAATTATATCAAGGCCCTTCGTCTGTTTAAGGGCACGCCGGTTTGG
ACGCCCTACAACAGGCAATGCGGGTAGAACGGGGCTATGATTATGAGGAT
ACATGCACGGTCTCAAGGGAAACGATGCCAAATTACGACGAAAAGATCAA
GAGCTTCTTCGAAGAGCATATTCATTCGGACGAGATGTTGGAGGCCTGGT
ACATGGACGACGACCCCACAGTGGACCAGCGGGAGGAGCACCGGCTGAAT
CCGAATAAGCCCGCATCATTGGAGGTGCTCCAGAAGCTGGGCGTATTGTA
TTGGACGTTTGACGCCGATACGTACAAGGAAAACCCTAAGTTTGCGGCCG
CAGGAGAATCACCCTAGCCGTACCAAGTACGCTCAAGGTTTCCTGCAAAT
GGCGGCTTAAGAGATCCGCTACTGCTTGGACGGATCTGGGTATTTTGACG
TGCGGGACGGGCAAGACCGTTGGATTCGAGTCAAGGTGGAGAAGAACGAC
TTGATCGTTCTGCCGGAAGGCATTTACCACCGGTTCACCCTCGACACGAA
GAATTATATCAAGGCCCTTCGTCTGTTTAAGGGCACGCCGGTTTGGACGC
CCTACAACAGGCAATGCGGGTAGAACGGGGCTATGATTATGAGGATACAT
GCACGGTCTCAAGGGAAACGATGCCAAATTACGACGAAAAGATCAAGAGC
TTCTTCGAAGAGCATATTCATTCGGACGAGATGTTGGAGGCCTGGTACAT
GGACGACGACCCCACAGTGGACCAGCGGGAGGAGCACCGGCTGAATCCGA
ATAAGCCCGCATCATTGGAGGTGCTCCAGAAGCTGGGCGTATTGTATTGG
ACGTTTGACGCCGATACGTACAAGGAAAACCCTAAGTTTGCGGCCGCAGG
AGAATCACCCTAGCCGTACCAAGTACGCTCAAGGTTTCCTGCAAATGGCG
GCTTAAGAGATCCGCTACTGCTTGGACGGATCTGGGTATTTTGACGTGCG
GGACGGGCAAGACCGTTGGATTCGAGTCAAGGTGGAGAAGAACGACTTGA
TCGTTCTGCCGGAAGGCATTTACCACCGGTTCACCCTCGACACGAAGAAT
TATATCAAGGCCCTTCGTCTGTTTAAGGGCACGCCGGTTTGGACGCCCTA
CAACAGGCAATGCGGGTAGAACGGGGCTATGATTATGAGGATACATGCAC
GGTCTCAAGGGAAACGATGCCAAATTACGACGAAAAGATCAAGAGCTTCT
TCGAAGAGCATATTCATTCGGACGAGATGTTGGAGGCCTGGTACATGGAC
GACGACCCCACAGTGGACCAGCGGGAGGAGCACCGGCTGAATCCGAATAA
GCCCGCATCATTGGAGGTGCTCCAGAAGCTGGGCGTATTGTATTGGACGT
TTGACGCCGATACGTACAAGGAAAACCCTAAGTTTGCGGCCGCAGGAGAA
TCACCCTAGCCGTACCAAGTACGCTCAAGGTTTCCTGCAAATGGCGGCTT
AAGAGATCCGCTACTGCTTGGACGGATCTGGGTATTTTGACGTGCGGGAC
GGGCAAGACCGTTGGATTCGAGTCAAGGTGGAGAAGAACGACTTGATCGT
TCTGCCGGAAGGCATTTACCACCGGTTCACCCTCGACACGAAGAATTATA
TCAAGGCCCTTCGTCTGTTTAAGGGCACGCCGGTTTGGACGCCCTACAAC
AGGCAATGCGGGTAGAACGGGGCTATGATTATGAGGATACATGCACGGTC
TCAAGGGAAACGATGCCAAATTACGACGAAAAGATCAAGAGCTTCTTCGA
AGAGCATATTCATTCGGACGAGATGTTGGAGGCCTGGTACATGGACGACG
ACCCCACAGTGGACCAGCGGGAGGAGCACCGGCTGAATCCGAATAAGCCC
GCATCATTGGAGGTGCTCCAGAAGCTGGGCGTATTGTATTGGACGTTTGA
CGCCGATACGTACAAGGAAAACCCTAAGTTTGCG
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Synonyms
Publications