jgi.p|Nanoce1779_2|596786, mRNA_6922 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596786
Unique NamemRNA_6922
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1014
Alignment locationscaffold_17:435329..436910 -

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Properties
Property NameValue
TranscriptId596872
TrackFilteredModels2
ProteinId596786
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:435329..436910 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596786gene_6922Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596786mRNA_6922-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6922CDS_6922Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6922 ID=mRNA_6922|Name=jgi.p|Nanoce1779_2|596786|organism=Nannochloropsis oceanica|type=mRNA|length=1014bp
ACAGTCACAGTCCTACAAGCCATCGTTCTTTAGCCATGATGCTGCGTCGC
CTGGCCCTTGCTCATCGCACTGTCCATCTCAACAAGCTAGTCCCCCGCCG
CAATCTTTCCACTGCCCCGCATGCGGAACCTGTGGAGGCTGCTACAGCGC
TAGCCGGCCCCGAAACCTACAGCAAGGCCCTCTCCTTGTTCCATTGGTTG
GTGGGGCTTAGCATGATGGGGAGCGTTGGCGCGGTCTTGCAAGCTCAACA
AGTGAAGGGCAAGGAGAAGGGGGTGTGGATGTTCCGCCACAAGAGTCTCG
GACTCCTCGCGGGTATTTTGATTGCCCCTCGTTTCATTTTCCGTTTGTCC
TCCAAGATCCCCGCACCCATGAAGGAGTGGAATGGCTTCGAGCAAATTGC
GAGCAAGATATCTCATCTGGGTTTGTACGGGTTCATGGTGGGGATGCCCG
TGTCCGGGATTGCCATGGGGTATTATGGCGGAAAGGGCCTTCCTTTCTTC
TGGACCACCCTTGACGGTGCTGCAACTGCCAATGGCGAGGTTGCCAAGCA
GGCATTCAGTATTCATAAGACCATGGGGACGTATGGGAAATACCTGATCC
CTTTGCATGTGGGTGCGGCGGGGGCGCATGCGGTGAGGGGACAGGCGATC
TTCGCGAGGATCAACCCATTCAGGTAGATGGGGGAGGGGAGGGGGGCAGG
TAAAAATAAATGAGAGAATGAGATGGAATGTGGAAATTTGCTTGGATGCC
CGAGACCTTGACGAAGTACTATAGGAAAATAAGCCAGTGCGGAAGCGGCG
GGGGAGGAGGTGAAAGGAGAGAAAAGTGAGGAGGAGAGGGAAGAGAGGAT
GTCGTGCATACAAGGCGTGACGGGGAAGAGTGAGGGCACAGAGGAAATAT
GATATAAAGAAAAGGATGAATCAGGAGTGAGGAATGGAGAACCTTCCGAA
AAATTTGGCATAGTTTTGTATACGAGGAAAAGAAAGGCATCAAGAATATA
GTGAGCTCCTGAAA
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protein sequence of jgi.p|Nanoce1779_2|596786

>mRNA_6922-protein ID=mRNA_6922-protein|Name=jgi.p|Nanoce1779_2|596786|organism=Nannochloropsis oceanica|type=polypeptide|length=214bp
MMLRRLALAHRTVHLNKLVPRRNLSTAPHAEPVEAATALAGPETYSKALS
LFHWLVGLSMMGSVGAVLQAQQVKGKEKGVWMFRHKSLGLLAGILIAPRF
IFRLSSKIPAPMKEWNGFEQIASKISHLGLYGFMVGMPVSGIAMGYYGGK
GLPFFWTTLDGAATANGEVAKQAFSIHKTMGTYGKYLIPLHVGAAGAHAV
RGQAIFARINPFR*
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mRNA from alignment at scaffold_17:435329..436910-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6922 ID=mRNA_6922|Name=jgi.p|Nanoce1779_2|596786|organism=Nannochloropsis oceanica|type=mRNA|length=1582bp|location=Sequence derived from alignment at scaffold_17:435329..436910- (Nannochloropsis oceanica)
ACAGTCACAGTCCTACAAGCCATCGTTCTTTAGCCATGATGCTGCGTCGC
CTGGCCCTTGCTCATCGCACTGTCCATCTCAACAAGCTAGTCCCCCGCCG
CAATCTTTCCACTGCCCCGCATGCGGAACCTGTGGAGGCTGCTACAGCGC
TAGCCGGCCCCGAAACCTACAGCAAGGCCCTCTCCTTGTTCCATTGGTTG
GTGGGGCTTAGCATGATGGGGAGCGTTGGCGCGGTATGTCTATGTCAACC
TCTATTCTCCATTGCTTGTTTCAACCTCCCTGCCTTATACCCCCTAGTTA
CCTCAAGCGCAAAGCTAGTCATCCCTCCCTTTCACCCAGCCGCTCGCTGA
ACCACCTTATGTATAAAGATACCAATCATACCACAACTCAGGTCTTGCAA
GCTCAACAAGTGAAGGGCAAGGAGAAGGGGGTGTGGATGTTCCGCCACAA
GAGTCTCGGACTCCTCGCGGGTATTTTGATTGCCCCTCGTTTCATTTTCC
GTTTGTCCTCCAAGATCCCCGCACCCATGAAGGAGTGGAATGGCTTCGAG
CAAATTGCGAGCAAGATATCTCATCTGGGTTTGTACGGGTTCATGGTGGG
GATGCCCGTGTCCGGGATTGCCATGGGGTAAGTGGAAGGAAATAATGGCA
GTGTCTTTGTAAGCAAGACTTTGGATTGGTTGCTTAGCGACAATTTTGTG
GTGGAAAGGTTGTATTGAAGTATGAATGGGTTTATAGCTGGGATGCCCGC
GTCGGGTATTGCCATGGGACGAGTGATTCGAATATATATTGGACATCGCT
GAGCGTGGACATTCGAATGAGAAGTTTTACAGCCTCCATGGGAAGACCAT
TCGAACATACATTACATACACCAGAGCATTCGAATATACATTATATGTAC
CATGGCAGTGATGGGGAGAGCATTCGAACGTATATTGGACATATTTGGGC
CGAGGAGGCCGTCGGCATTCACAAGGTGTACAGCGCAATTCACCATTCCC
CCTTCCCTCCCACTTCATTTTCCCCTCTTCACCATAGGTATTATGGCGGA
AAGGGCCTTCCTTTCTTCTGGACCACCCTTGACGGTGCTGCAACTGCCAA
TGGCGAGGTTGCCAAGCAGGCATTCAGTATTCATAAGACCATGGGGACGT
ATGGGAAATACCTGATCCCTTTGCATGTGGGTGCGGCGGGGGCGCATGCG
GTGAGGGGACAGGCGATCTTCGCGAGGATCAACCCATTCAGGTAGATGGG
GGAGGGGAGGGGGGCAGGTAAAAATAAATGAGAGAATGAGATGGAATGTG
GAAATTTGCTTGGATGCCCGAGACCTTGACGAAGTACTATAGGAAAATAA
GCCAGTGCGGAAGCGGCGGGGGAGGAGGTGAAAGGAGAGAAAAGTGAGGA
GGAGAGGGAAGAGAGGATGTCGTGCATACAAGGCGTGACGGGGAAGAGTG
AGGGCACAGAGGAAATATGATATAAAGAAAAGGATGAATCAGGAGTGAGG
AATGGAGAACCTTCCGAAAAATTTGGCATAGTTTTGTATACGAGGAAAAG
AAAGGCATCAAGAATATAGTGAGCTCCTGAAA
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Coding sequence (CDS) from alignment at scaffold_17:435329..436910-

>mRNA_6922 ID=mRNA_6922|Name=jgi.p|Nanoce1779_2|596786|organism=Nannochloropsis oceanica|type=CDS|length=1926bp|location=Sequence derived from alignment at scaffold_17:435329..436910- (Nannochloropsis oceanica)
GTATTATGGCGGAAAGGGCCTTCCTTTCTTCTGGACCACCCTTGACGGTG
CTGCAACTGCCAATGGCGAGGTTGCCAAGCAGGCATTCAGTATTCATAAG
ACCATGGGGACGTATGGGAAATACCTGATCCCTTTGCATGTGGGTGCGGC
GGGGGCGCATGCGGTGAGGGGACAGGCGATCTTCGCGAGGATCAACCCAT
TCAGGTAGGTCTTGCAAGCTCAACAAGTGAAGGGCAAGGAGAAGGGGGTG
TGGATGTTCCGCCACAAGAGTCTCGGACTCCTCGCGGGTATTTTGATTGC
CCCTCGTTTCATTTTCCGTTTGTCCTCCAAGATCCCCGCACCCATGAAGG
AGTGGAATGGCTTCGAGCAAATTGCGAGCAAGATATCTCATCTGGGTTTG
TACGGGTTCATGGTGGGGATGCCCGTGTCCGGGATTGCCATGGGATGATG
CTGCGTCGCCTGGCCCTTGCTCATCGCACTGTCCATCTCAACAAGCTAGT
CCCCCGCCGCAATCTTTCCACTGCCCCGCATGCGGAACCTGTGGAGGCTG
CTACAGCGCTAGCCGGCCCCGAAACCTACAGCAAGGCCCTCTCCTTGTTC
CATTGGTTGGTGGGGCTTAGCATGATGGGGAGCGTTGGCGCGGTATTATG
GCGGAAAGGGCCTTCCTTTCTTCTGGACCACCCTTGACGGTGCTGCAACT
GCCAATGGCGAGGTTGCCAAGCAGGCATTCAGTATTCATAAGACCATGGG
GACGTATGGGAAATACCTGATCCCTTTGCATGTGGGTGCGGCGGGGGCGC
ATGCGGTGAGGGGACAGGCGATCTTCGCGAGGATCAACCCATTCAGGTAG
GTCTTGCAAGCTCAACAAGTGAAGGGCAAGGAGAAGGGGGTGTGGATGTT
CCGCCACAAGAGTCTCGGACTCCTCGCGGGTATTTTGATTGCCCCTCGTT
TCATTTTCCGTTTGTCCTCCAAGATCCCCGCACCCATGAAGGAGTGGAAT
GGCTTCGAGCAAATTGCGAGCAAGATATCTCATCTGGGTTTGTACGGGTT
CATGGTGGGGATGCCCGTGTCCGGGATTGCCATGGGATGATGCTGCGTCG
CCTGGCCCTTGCTCATCGCACTGTCCATCTCAACAAGCTAGTCCCCCGCC
GCAATCTTTCCACTGCCCCGCATGCGGAACCTGTGGAGGCTGCTACAGCG
CTAGCCGGCCCCGAAACCTACAGCAAGGCCCTCTCCTTGTTCCATTGGTT
GGTGGGGCTTAGCATGATGGGGAGCGTTGGCGCGGTATTATGGCGGAAAG
GGCCTTCCTTTCTTCTGGACCACCCTTGACGGTGCTGCAACTGCCAATGG
CGAGGTTGCCAAGCAGGCATTCAGTATTCATAAGACCATGGGGACGTATG
GGAAATACCTGATCCCTTTGCATGTGGGTGCGGCGGGGGCGCATGCGGTG
AGGGGACAGGCGATCTTCGCGAGGATCAACCCATTCAGGTAGGTCTTGCA
AGCTCAACAAGTGAAGGGCAAGGAGAAGGGGGTGTGGATGTTCCGCCACA
AGAGTCTCGGACTCCTCGCGGGTATTTTGATTGCCCCTCGTTTCATTTTC
CGTTTGTCCTCCAAGATCCCCGCACCCATGAAGGAGTGGAATGGCTTCGA
GCAAATTGCGAGCAAGATATCTCATCTGGGTTTGTACGGGTTCATGGTGG
GGATGCCCGTGTCCGGGATTGCCATGGGATGATGCTGCGTCGCCTGGCCC
TTGCTCATCGCACTGTCCATCTCAACAAGCTAGTCCCCCGCCGCAATCTT
TCCACTGCCCCGCATGCGGAACCTGTGGAGGCTGCTACAGCGCTAGCCGG
CCCCGAAACCTACAGCAAGGCCCTCTCCTTGTTCCATTGGTTGGTGGGGC
TTAGCATGATGGGGAGCGTTGGCGCG
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Synonyms
Publications