jgi.p|Nanoce1779_2|596783, mRNA_6921 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596783
Unique NamemRNA_6921
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1128
Alignment locationscaffold_17:433962..435747 +

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Properties
Property NameValue
TranscriptId596869
TrackFilteredModels2
ProteinId596783
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:433962..435747 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596783gene_6921Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596783mRNA_6921-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6921CDS_6921Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6921 ID=mRNA_6921|Name=jgi.p|Nanoce1779_2|596783|organism=Nannochloropsis oceanica|type=mRNA|length=1128bp
AGCACACTACACAAACAATAGTTCTTGTTCCATTCAGAAGCTCTTAACCA
TGCTCTTCTCTCGCACGACGGCGCTGGTCGCCATGGGCCTTTTGGTGGCG
GGCACTTCCAGCGCCTCCGCGACCGTGGATCGTCAGGTCAGAAGCGCCAT
CAACCCCCGAAGGGTGAAGAGTTTCAAGTTCTGCTCCCGTCCTGTTCTTG
ACTCGATGTCATTCCAGCCGCTAACGCGTCTTGACGGGGATTCTTCCCTC
GACAATATCACTATCCCCTACCTTTTCTTTCCGTATAATGGGGTCCCAGA
TAATTTGAATGACTTATACTTGTACGGAGCTCTTGGTAACATTATGGCGG
CGGATTTCGGGTTTAAAAGTAATATGAATGACTGCGATTCAGCTTCAAAC
GGTGACTTCAACAGTACCAGCTTGGGTACGATGGTCGGCACGTGTAAATC
AATTTTCAGTCCCTTCAACGCTACGGAACTCTTTATGTCGCTGGAAAATG
GACGTCGCCGCCTGATGGAAGCGAATGATGTTGATCAAGTGCGTCGCAAT
CTCCAAGAGGAATTTTTTGCGTATTTTGAAACGGAGTTGTACTGCACGTG
GAAAGCTATCTTCAACGAACCCGAGAGAAAGGCGGGCGAGAAGACAGTCC
TTACCGGGACTTCCATCCGTACGGCTGTAGAGACGGGAGAGGATTTCGTG
GACGGGCGAAGCGGCTTCCTCTCGGGCAATAAGCCCCTCGTGGTCTCGTC
CGTCGTGAAGAACCTGGAGCTCTTTCGTAGGGATCGCATGCTTGATGAAG
ACCCTTTTGTTACGGCGTATACGGAGTACACGGTAGAGTACTACAGGGCC
AAGGGCTGGAACCCGTTCTACCTCTCCTCGAAGTAAGAGCACGCGCGGGA
TACATGGGGGAATATATGGGGGACGCTTTTCCCCGAAGGTGAGGGAAACG
AGGTGATCTATGTAGTGATTTTATTTGTGGCTATTTTTGACGCACAGTGG
CGCTATTATTGCTTCCCGATCGTGTGTCCACTTGAGTGTGTCGTGGTGTG
CTGAATGGGTTGATCCTCGCGAAGATCGCCTGTCCCCTCACCGCATGCGC
CCCCGCCGCACCCACATGCAAAGGGATC
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protein sequence of jgi.p|Nanoce1779_2|596783

>mRNA_6921-protein ID=mRNA_6921-protein|Name=jgi.p|Nanoce1779_2|596783|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MLFSRTTALVAMGLLVAGTSSASATVDRQVRSAINPRRVKSFKFCSRPVL
DSMSFQPLTRLDGDSSLDNITIPYLFFPYNGVPDNLNDLYLYGALGNIMA
ADFGFKSNMNDCDSASNGDFNSTSLGTMVGTCKSIFSPFNATELFMSLEN
GRRRLMEANDVDQVRRNLQEEFFAYFETELYCTWKAIFNEPERKAGEKTV
LTGTSIRTAVETGEDFVDGRSGFLSGNKPLVVSSVVKNLELFRRDRMLDE
DPFVTAYTEYTVEYYRAKGWNPFYLSSK*
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mRNA from alignment at scaffold_17:433962..435747+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6921 ID=mRNA_6921|Name=jgi.p|Nanoce1779_2|596783|organism=Nannochloropsis oceanica|type=mRNA|length=1786bp|location=Sequence derived from alignment at scaffold_17:433962..435747+ (Nannochloropsis oceanica)
AGCACACTACACAAACAATAGTTCTTGTTCCATTCAGAAGCTCTTAACCA
TGCTCTTCTCTCGCACGACGGCGCTGGTCGCCATGGGCCTTTTGGTGGCG
GGCACTTCCAGCGCCTCCGCGACCGTGGATCGTCAGGTCAGAAGCGCCAT
CAACCCCCGAAGGGTGAAGAGTTTCAAGTTCTGCTCCCGTCCTGTTCTTG
ACTCGATGTCATTCCAGCCGCTAACGCGTCTTGACGGGGATTCTTCCCTC
GACAATATCACTATCCCCTACCTTTTCTTTCCGTATAATGGGGTCCCAGA
TAATTTGAATGACTTATACTTGTACGGAGCTCTTGGTAACATTGTAAGTA
GTGGTGAGGGAATGAGTTAATGAAATGTGATTGTGTGAAAGCGAAGTAAG
CCGTCCTAACCCCTCTTCCTCCATGCGATTTCCCTTCTCCTACCCCTACG
ACAGATGGCGGCGGATTTCGGGTTTAAAAGTAATATGAATGACTGCGATT
CAGCTTCAAACGGTGACTTCAACAGTACCAGCTTGGGTACGATGGTCGGC
ACGTGTAAATCAATTTTCAGTCCCTTCAACGCTACGGAACTCTTTATGTC
GCTGGAAAATGGACGTCGCCGCCTGATGGAAGCGAATGATGTTGATCAAG
TGCGTCGCAATCTCCAAGAGGAATTTTTTGCGTATTTTGAAACGGAGTTG
TACTGCACGTGGAAAGCTATCTTCAACGAACCCGAGAGAAAGGCGGGCGA
GAAGACAGTCCTTACCGGGACTTCCATCCGTACGGCTGTAGAGACGGGAG
AGGATTTCGTGGACGGGCGAAGCGGCTTCCTCTCGGGCAATAAGCCCCTC
GTGGTCTCGTCCGTCGTGAAGAACCTGGAGCTCTTTCGTAGGGATCGCAT
GCTTGATGAAGACCCTTTTGTTACGGCGTATACGGAGTACACGGTAGAGT
ACTACAGGGCCAAGGGCTGGAACCCGTTCTACCTCTCCTCGAAGTAAGAG
CACGCGCGGGATACATGGGGGAATATATGGGGGACGCTTTTCCCCGAAGG
TGAGGGAAACGAGGTGATCTATGTAGTGATTTTATTTGTGGCTATTTTTG
ACGCACAGTGGCGCTATTATTGCTTCCCGATCGTGTGTCCACTTGAGTGT
GTCGTGGTGTGCTGTGTGTATGTTTGGGGGTAATGCCAGACTGAGAGAAG
GGGGAGGAGGGGAAGGGTTCTTATCCATTTCGCACGAACAAAGACTTTTT
GTCCTTGACAATCGAAAGTATGATAATTGGGTAAAGTGAAAGAAGCCTGG
TGTCTTCAAAGTGTCAGCCGTCCCAGCGGGGGCATCCACTAGAGCAGCAG
TTGCAGCATGTGTTTCCTTTCAGGAGCTCACTATATTCTTGATGCCTTTC
TTTTCCTCGTATACAAAACTATGCCAAATTTTTCGGAAGGTTCTCCATTC
CTCACTCCTGATTCATCCTTTTCTTTATATCATATTTCCTCTGTGCCCTC
ACTCTTCCCCGTCACGCCTTGTATGCACGACATCCTCTCTTCCCTCTCCT
CCTCACTTTTCTCTCCTTTCACCTCCTCCCCCGCCGCTTCCGCACTGGCT
TATTTTCCTATAGTACTTCGTCAAGGTCTCGGGCATCCAAGCAAATTTCC
ACATTCCATCTCATTCTCTCATTTATTTTTACCTGCCCCCCTCCCCTCCC
CCATCTACCTGAATGGGTTGATCCTCGCGAAGATCGCCTGTCCCCTCACC
GCATGCGCCCCCGCCGCACCCACATGCAAAGGGATC
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Coding sequence (CDS) from alignment at scaffold_17:433962..435747+

>mRNA_6921 ID=mRNA_6921|Name=jgi.p|Nanoce1779_2|596783|organism=Nannochloropsis oceanica|type=CDS|length=1674bp|location=Sequence derived from alignment at scaffold_17:433962..435747+ (Nannochloropsis oceanica)
ATGCTCTTCTCTCGCACGACGGCGCTGGTCGCCATGGGCCTTTTGGTGGC
GGGCACTTCCAGCGCCTCCGCGACCGTGGATCGTCAGGTCAGAAGCGCCA
TCAACCCCCGAAGGGTGAAGAGTTTCAAGTTCTGCTCCCGTCCTGTTCTT
GACTCGATGTCATTCCAGCCGCTAACGCGTCTTGACGGGGATTCTTCCCT
CGACAATATCACTATCCCCTACCTTTTCTTTCCGTATAATGGGGTCCCAG
ATAATTTGAATGACTTATACTTGTACGGAGCTCTTGGTAACATTATGGCG
GCGGATTTCGGGTTTAAAAGTAATATGAATGACTGCGATTCAGCTTCAAA
CGGTGACTTCAACAGTACCAGCTTGGGTACGATGGTCGGCACGTGTAAAT
CAATTTTCAGTCCCTTCAACGCTACGGAACTCTTTATGTCGCTGGAAAAT
GGACGTCGCCGCCTGATGGAAGCGAATGATGTTGATCAAGTGCGTCGCAA
TCTCCAAGAGGAATTTTTTGCGTATTTTGAAACGGAGTTGTACTGCACGT
GGAAAGCTATCTTCAACGAACCCGAGAGAAAGGCGGGCGAGAAGACAGTC
CTTACCGGGACTTCCATCCGTACGGCTGTAGAGACGGGAGAGGATTTCGT
GGACGGGCGAAGCGGCTTCCTCTCGGGCAATAAGCCCCTCGTGGTCTCGT
CCGTCGTGAAGAACCTGGAGCTCTTTCGTAGGGATCGCATGCTTGATGAA
GACCCTTTTGTTACGGCGTATACGGAGTACACGGTAGAGTACTACAGGGC
CAAGGGCTGGAACCCGTTCTACCTCTCCTCGAAGTAAATGCTCTTCTCTC
GCACGACGGCGCTGGTCGCCATGGGCCTTTTGGTGGCGGGCACTTCCAGC
GCCTCCGCGACCGTGGATCGTCAGGTCAGAAGCGCCATCAACCCCCGAAG
GGTGAAGAGTTTCAAGTTCTGCTCCCGTCCTGTTCTTGACTCGATGTCAT
TCCAGCCGCTAACGCGTCTTGACGGGGATTCTTCCCTCGACAATATCACT
ATCCCCTACCTTTTCTTTCCGTATAATGGGGTCCCAGATAATTTGAATGA
CTTATACTTGTACGGAGCTCTTGGTAACATTATGGCGGCGGATTTCGGGT
TTAAAAGTAATATGAATGACTGCGATTCAGCTTCAAACGGTGACTTCAAC
AGTACCAGCTTGGGTACGATGGTCGGCACGTGTAAATCAATTTTCAGTCC
CTTCAACGCTACGGAACTCTTTATGTCGCTGGAAAATGGACGTCGCCGCC
TGATGGAAGCGAATGATGTTGATCAAGTGCGTCGCAATCTCCAAGAGGAA
TTTTTTGCGTATTTTGAAACGGAGTTGTACTGCACGTGGAAAGCTATCTT
CAACGAACCCGAGAGAAAGGCGGGCGAGAAGACAGTCCTTACCGGGACTT
CCATCCGTACGGCTGTAGAGACGGGAGAGGATTTCGTGGACGGGCGAAGC
GGCTTCCTCTCGGGCAATAAGCCCCTCGTGGTCTCGTCCGTCGTGAAGAA
CCTGGAGCTCTTTCGTAGGGATCGCATGCTTGATGAAGACCCTTTTGTTA
CGGCGTATACGGAGTACACGGTAGAGTACTACAGGGCCAAGGGCTGGAAC
CCGTTCTACCTCTCCTCGAAGTAA
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Synonyms
Publications