jgi.p|Nanoce1779_2|596781, mRNA_6920 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|596781
Unique Name	mRNA_6920
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	894
Alignment location	scaffold_17:431465..432466 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	596867
Track	FilteredModels2
ProteinId	596781

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:431465..432466 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596781	gene_6920	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596781	mRNA_6920-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6920	CDS_6920	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:431465..432466+
coding sequence from alignment at scaffold_17:431465..432466+

mRNA sequence

>mRNA_6920 ID=mRNA_6920|Name=jgi.p|Nanoce1779_2|596781|organism=Nannochloropsis oceanica|type=mRNA|length=894bp
ACAGGCCGAAGGAGTAGTTATGCCTAATGATTTGGGCGCGGAGCTGGACG
ATCTCATCAAGGAACGCGACATCTTGGAGGCCGAGGCGGCGGCCATCACG
GACTTCTTGACCTCGCCCGGTCCCGGTGATGGGGCTCCCCCGGGCTTGCG
TGGCGATTCCTTGGTCGACGACGAAGGCTTCCCACGGGCCGACATAGATG
TTTGGGATGTGCGGGTGAAACGCAATCGCCTCGCCTGCATCGAGACGGAC
CACGCCGAACTTATGAAGCGGATTGAGGAGCTCGTGCAGCAGCTCCATCA
AGAAGCCAAGGCCAAGGCAGCGCTCCGTGAAACCAGCAGCAGCAACAATG
TGGCTCCAGCCCGGTCGGAAGGGCAACAACCCCACCTCCCCAAGACCACC
GGCAACACTACCTCCTCCGGTGCACTCACACACGACCCCACAGCTTTAGA
AGGATGGGAAAGAGTGGAGAAGAAAGAAGGAACTTCAAAGCAACCATTCG
CCCTGATTGACCAGGTCTTTCGTGCCTCGCCTGCGGAAGAGTCAGGGATG
AAAGCAGGAGACATGCTGGTGAGTTTCGGGGGCGTTGACGCGGAGAACCA
CGGCCACTTTACAGCCATCGTAAACCTGGTTCAAAACAGTGTGGGGCAGC
CTGTCCGAGTGGTGGTATTGCGGAAGGAAGAGGAGGAGGAGGGAACGCTG
TCGTCGTCCTCCTCTTCGTCCCGACTAGTGACTCTGTCCTTGATTCCACA
CACATGGAGCGGCCGAGGCTTGCTTGGGTGTCATTTGACCGCCTTGTCAT
CTTAAGTGGGAAAATATCGGGAGTGAGAGTGGAAGAGACGCAGCTGTGGG
TGGAGAGGAAAGGATAAAAGACAAGAAAACAATGCTTTCTGTAC

protein sequence of jgi.p|Nanoce1779_2|596781

>mRNA_6920-protein ID=mRNA_6920-protein|Name=jgi.p|Nanoce1779_2|596781|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MPNDLGAELDDLIKERDILEAEAAAITDFLTSPGPGDGAPPGLRGDSLVD
DEGFPRADIDVWDVRVKRNRLACIETDHAELMKRIEELVQQLHQEAKAKA
ALRETSSSNNVAPARSEGQQPHLPKTTGNTTSSGALTHDPTALEGWERVE
KKEGTSKQPFALIDQVFRASPAEESGMKAGDMLVSFGGVDAENHGHFTAI
VNLVQNSVGQPVRVVVLRKEEEEEGTLSSSSSSSRLVTLSLIPHTWSGRG
LLGCHLTALSS*

mRNA from alignment at scaffold_17:431465..432466+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6920 ID=mRNA_6920|Name=jgi.p|Nanoce1779_2|596781|organism=Nannochloropsis oceanica|type=mRNA|length=1002bp|location=Sequence derived from alignment at scaffold_17:431465..432466+ (Nannochloropsis oceanica)
ACAGGCCGAAGGAGTAGTTATGCCTAATGATTTGGGCGCGGAGCTGGACG
ATGTGAGTTGGATGTAGTGATGAGGGTAGGGAGGTATGGGGGAAGGAGAG
GGCGGGGCATGTTCTGCCGCTCTCAATTCGCCTTTTTACACTGCAACGCA
CCACACACAGCTCATCAAGGAACGCGACATCTTGGAGGCCGAGGCGGCGG
CCATCACGGACTTCTTGACCTCGCCCGGTCCCGGTGATGGGGCTCCCCCG
GGCTTGCGTGGCGATTCCTTGGTCGACGACGAAGGCTTCCCACGGGCCGA
CATAGATGTTTGGGATGTGCGGGTGAAACGCAATCGCCTCGCCTGCATCG
AGACGGACCACGCCGAACTTATGAAGCGGATTGAGGAGCTCGTGCAGCAG
CTCCATCAAGAAGCCAAGGCCAAGGCAGCGCTCCGTGAAACCAGCAGCAG
CAACAATGTGGCTCCAGCCCGGTCGGAAGGGCAACAACCCCACCTCCCCA
AGACCACCGGCAACACTACCTCCTCCGGTGCACTCACACACGACCCCACA
GCTTTAGAAGGATGGGAAAGAGTGGAGAAGAAAGAAGGAACTTCAAAGCA
ACCATTCGCCCTGATTGACCAGGTCTTTCGTGCCTCGCCTGCGGAAGAGT
CAGGGATGAAAGCAGGAGACATGCTGGTGAGTTTCGGGGGCGTTGACGCG
GAGAACCACGGCCACTTTACAGCCATCGTAAACCTGGTTCAAAACAGTGT
GGGGCAGCCTGTCCGAGTGGTGGTATTGCGGAAGGAAGAGGAGGAGGAGG
GAACGCTGTCGTCGTCCTCCTCTTCGTCCCGACTAGTGACTCTGTCCTTG
ATTCCACACACATGGAGCGGCCGAGGCTTGCTTGGGTGTCATTTGACCGC
CTTGTCATCTTAAGTGGGAAAATATCGGGAGTGAGAGTGGAAGAGACGCA
GCTGTGGGTGGAGAGGAAAGGATAAAAGACAAGAAAACAATGCTTTCTGT
AC

Coding sequence (CDS) from alignment at scaffold_17:431465..432466+

>mRNA_6920 ID=mRNA_6920|Name=jgi.p|Nanoce1779_2|596781|organism=Nannochloropsis oceanica|type=CDS|length=1572bp|location=Sequence derived from alignment at scaffold_17:431465..432466+ (Nannochloropsis oceanica)
ATGCCTAATGATTTGGGCGCGGAGCTGGACGATCTCATCAAGGAACGCGA
CATCTTGGAGGCCGAGGCGGCGGCCATCACGGACTTCTTGACCTCGCCCG
GTCCCGGTGATGGGGCTCCCCCGGGCTTGCGTGGCGATTCCTTGGTCGAC
GACGAAGGCTTCCCACGGGCCGACATAGATGTTTGGGATGTGCGGGTGAA
ACGCAATCGCCTCGCCTGCATCGAGACGGACCACGCCGAACTTATGAAGC
GGATTGAGGAGCTCGTGCAGCAGCTCCATCAAGAAGCCAAGGCCAAGGCA
GCGCTCCGTGAAACCAGCAGCAGCAACAATGTGGCTCCAGCCCGGTCGGA
AGGGCAACAACCCCACCTCCCCAAGACCACCGGCAACACTACCTCCTCCG
GTGCACTCACACACGACCCCACAGCTTTAGAAGGATGGGAAAGAGTGGAG
AAGAAAGAAGGAACTTCAAAGCAACCATTCGCCCTGATTGACCAGGTCTT
TCGTGCCTCGCCTGCGGAAGAGTCAGGGATGAAAGCAGGAGACATGCTGG
TGAGTTTCGGGGGCGTTGACGCGGAGAACCACGGCCACTTTACAGCCATC
GTAAACCTGGTTCAAAACAGTGTGGGGCAGCCTGTCCGAGTGGTGGTATT
GCGGAAGGAAGAGGAGGAGGAGGGAACGCTGTCGTCGTCCTCCTCTTCGT
CCCGACTAGTGACTCTGTCCTTGATTCCACACACATGGAGCGGCCGAGGC
TTGCTTGGGTGTCATTTGACCGCCTTGTCATCTTAAATGCCTAATGATTT
GGGCGCGGAGCTGGACGATCTCATCAAGGAACGCGACATCTTGGAGGCCG
AGGCGGCGGCCATCACGGACTTCTTGACCTCGCCCGGTCCCGGTGATGGG
GCTCCCCCGGGCTTGCGTGGCGATTCCTTGGTCGACGACGAAGGCTTCCC
ACGGGCCGACATAGATGTTTGGGATGTGCGGGTGAAACGCAATCGCCTCG
CCTGCATCGAGACGGACCACGCCGAACTTATGAAGCGGATTGAGGAGCTC
GTGCAGCAGCTCCATCAAGAAGCCAAGGCCAAGGCAGCGCTCCGTGAAAC
CAGCAGCAGCAACAATGTGGCTCCAGCCCGGTCGGAAGGGCAACAACCCC
ACCTCCCCAAGACCACCGGCAACACTACCTCCTCCGGTGCACTCACACAC
GACCCCACAGCTTTAGAAGGATGGGAAAGAGTGGAGAAGAAAGAAGGAAC
TTCAAAGCAACCATTCGCCCTGATTGACCAGGTCTTTCGTGCCTCGCCTG
CGGAAGAGTCAGGGATGAAAGCAGGAGACATGCTGGTGAGTTTCGGGGGC
GTTGACGCGGAGAACCACGGCCACTTTACAGCCATCGTAAACCTGGTTCA
AAACAGTGTGGGGCAGCCTGTCCGAGTGGTGGTATTGCGGAAGGAAGAGG
AGGAGGAGGGAACGCTGTCGTCGTCCTCCTCTTCGTCCCGACTAGTGACT
CTGTCCTTGATTCCACACACATGGAGCGGCCGAGGCTTGCTTGGGTGTCA
TTTGACCGCCTTGTCATCTTAA

Synonyms

Publications