jgi.p|Nanoce1779_2|573813, mRNA_692 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573813
Unique NamemRNA_692
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length862
Alignment locationscaffold_2:206998..207859 -

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Properties
Property NameValue
TranscriptId573899
TrackFilteredModels2
ProteinId573813
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:206998..207859 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573813gene_692Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573813mRNA_692-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_692CDS_692Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_692 ID=mRNA_692|Name=jgi.p|Nanoce1779_2|573813|organism=Nannochloropsis oceanica|type=mRNA|length=862bp
CCGCGAAAGCCAAAAGCAATAACAATTAGCGAGCCGTATGACTCGTCGGC
ACCAGCGGAGGAAGGCTGTGCCGCCCCGTTGGCAGCCACCACGACGCGAG
CCCCACCAACAAACGAGACGATGGAGCGCGGAATCCTGCAGCCGCCACCG
TTAAATTCATCGTCATCACTACCGTTCTCTTCCTCCTCTATACACCCCCC
CAAATACGGTTCGTCCTTTCAATCACTGCCTGTCCGCCCTCAGCAGATTT
TTCGGGACTCAATTGTGTTTCCCAAGCCGACACATTTGGAAGGCACCAAG
CTTAACTCGATCTCTGAGCATGGGCATGACACGGAGGATAGAGAGGGAGA
GACAGTGACACCTGTGTTGTTGGAGGAGGAGGGGCAGAAAGAGCAGGAGG
AGGATCAACGAGAGGAGGCGAAAGATGTCGGGGGTAGTGCTCAGACTGTG
ACCTCTTCTGTCACCTCAAACGTACACGGACTGGCTATGGTGAAGGGAAA
TGGGCAGGAGGAGGAAGAGCTGGAGGAAGGGGGGGCGTGCCTGTCTAGCT
GTTCGCTGTATCTTTCCCAGCTCTCACTTCTGGGTGTGCTCCTTGACCAG
AGTCCCGGAGAGGAGGGCCGAGAGACCTTGGAAGAGAGCAGGCAGCAAGA
GCCCCGCTTGATGACAACGCTTGATATGGTGCCGATGGAGGAGGTGGAGG
AAGGGGTAGAGAAAAAGAAGGAAGAGGAAAGAATCAGGGAGATCAAGTAA
GGGACGCGCGTGAGTGAGTAGCAAACAGCGGGGATGAATGGAGAGAAACG
GAATAGAAACAGCAGTCGATGCGAAAGAGAGCGAAAGAATAAAAATCCAA
AAACGATTTAGG
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protein sequence of jgi.p|Nanoce1779_2|573813

>mRNA_692-protein ID=mRNA_692-protein|Name=jgi.p|Nanoce1779_2|573813|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MERGILQPPPLNSSSSLPFSSSSIHPPKYGSSFQSLPVRPQQIFRDSIVF
PKPTHLEGTKLNSISEHGHDTEDREGETVTPVLLEEEGQKEQEEDQREEA
KDVGGSAQTVTSSVTSNVHGLAMVKGNGQEEEELEEGGACLSSCSLYLSQ
LSLLGVLLDQSPGEEGRETLEESRQQEPRLMTTLDMVPMEEVEEGVEKKK
EEERIREIK*
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mRNA from alignment at scaffold_2:206998..207859-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_692 ID=mRNA_692|Name=jgi.p|Nanoce1779_2|573813|organism=Nannochloropsis oceanica|type=mRNA|length=862bp|location=Sequence derived from alignment at scaffold_2:206998..207859- (Nannochloropsis oceanica)
CCGCGAAAGCCAAAAGCAATAACAATTAGCGAGCCGTATGACTCGTCGGC
ACCAGCGGAGGAAGGCTGTGCCGCCCCGTTGGCAGCCACCACGACGCGAG
CCCCACCAACAAACGAGACGATGGAGCGCGGAATCCTGCAGCCGCCACCG
TTAAATTCATCGTCATCACTACCGTTCTCTTCCTCCTCTATACACCCCCC
CAAATACGGTTCGTCCTTTCAATCACTGCCTGTCCGCCCTCAGCAGATTT
TTCGGGACTCAATTGTGTTTCCCAAGCCGACACATTTGGAAGGCACCAAG
CTTAACTCGATCTCTGAGCATGGGCATGACACGGAGGATAGAGAGGGAGA
GACAGTGACACCTGTGTTGTTGGAGGAGGAGGGGCAGAAAGAGCAGGAGG
AGGATCAACGAGAGGAGGCGAAAGATGTCGGGGGTAGTGCTCAGACTGTG
ACCTCTTCTGTCACCTCAAACGTACACGGACTGGCTATGGTGAAGGGAAA
TGGGCAGGAGGAGGAAGAGCTGGAGGAAGGGGGGGCGTGCCTGTCTAGCT
GTTCGCTGTATCTTTCCCAGCTCTCACTTCTGGGTGTGCTCCTTGACCAG
AGTCCCGGAGAGGAGGGCCGAGAGACCTTGGAAGAGAGCAGGCAGCAAGA
GCCCCGCTTGATGACAACGCTTGATATGGTGCCGATGGAGGAGGTGGAGG
AAGGGGTAGAGAAAAAGAAGGAAGAGGAAAGAATCAGGGAGATCAAGTAA
GGGACGCGCGTGAGTGAGTAGCAAACAGCGGGGATGAATGGAGAGAAACG
GAATAGAAACAGCAGTCGATGCGAAAGAGAGCGAAAGAATAAAAATCCAA
AAACGATTTAGG
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Coding sequence (CDS) from alignment at scaffold_2:206998..207859-

>mRNA_692 ID=mRNA_692|Name=jgi.p|Nanoce1779_2|573813|organism=Nannochloropsis oceanica|type=CDS|length=630bp|location=Sequence derived from alignment at scaffold_2:206998..207859- (Nannochloropsis oceanica)
ATGGAGCGCGGAATCCTGCAGCCGCCACCGTTAAATTCATCGTCATCACT
ACCGTTCTCTTCCTCCTCTATACACCCCCCCAAATACGGTTCGTCCTTTC
AATCACTGCCTGTCCGCCCTCAGCAGATTTTTCGGGACTCAATTGTGTTT
CCCAAGCCGACACATTTGGAAGGCACCAAGCTTAACTCGATCTCTGAGCA
TGGGCATGACACGGAGGATAGAGAGGGAGAGACAGTGACACCTGTGTTGT
TGGAGGAGGAGGGGCAGAAAGAGCAGGAGGAGGATCAACGAGAGGAGGCG
AAAGATGTCGGGGGTAGTGCTCAGACTGTGACCTCTTCTGTCACCTCAAA
CGTACACGGACTGGCTATGGTGAAGGGAAATGGGCAGGAGGAGGAAGAGC
TGGAGGAAGGGGGGGCGTGCCTGTCTAGCTGTTCGCTGTATCTTTCCCAG
CTCTCACTTCTGGGTGTGCTCCTTGACCAGAGTCCCGGAGAGGAGGGCCG
AGAGACCTTGGAAGAGAGCAGGCAGCAAGAGCCCCGCTTGATGACAACGC
TTGATATGGTGCCGATGGAGGAGGTGGAGGAAGGGGTAGAGAAAAAGAAG
GAAGAGGAAAGAATCAGGGAGATCAAGTAA
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Synonyms
Publications