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Properties
| Property Name | Value |
|---|
| TranscriptId | 116812 |
| Track | FilteredModels2 |
| ProteinId | 116726 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_17 | supercontig | scaffold_17:428434..431362 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6919 ID=mRNA_6919|Name=jgi.p|Nanoce1779_2|116726|organism=Nannochloropsis oceanica|type=mRNA|length=2487bp
AACCCCTCAGTACTTAACCCACAACCCCCCCACGTACACCCTCACAGGGA
TAAAAAGGACGTCAAGAGAGGGTGAAAGCATTGCAGGGAAGAGTGCCTGG
TCCTATCCTTTGCCATTTTCTACTGCCTAGCTCCCCACGGAAGCCTCGCT
CAATTCCAACTTTTCATGCGCCTACAGATCAAGCCTGGTCTGCGACATTG
CTTCGTGGCCCTGCCCTTGGCCTTCACCCACAAGCTCCGCGAAGATGCTG
CCGCTGCCTCTGGCACCGTGGTGCTGGACCTGCGGTGGGAGGCGCCACAA
GGTGGAGAGTGCCGGGCGTACGCTTGTTGGAATGGAGCCATCACCAGCAC
GAGCGGTGGCAGTGGCAGGAGCAGCAATGTCGGTGGAAACGACGTGCTGG
AGATGGATGAGGCCTTCGCGCATTGCCTTGGGCTCGGACTTACGTCAGCT
GCGAACCGACAGGTCCACGTGCGGGTGCAGCGGGCGGAGGTGGTGGAGTT
TCCAGGTCGGTTAGAGCTGGAGCCCTGCACGCCCGATGACTGGGACCTGG
TGGAGCTTCACGCCGGATACCTCGAAGGAGAGATCTTGCGGCAAGTCGCC
GTGGTGTTTGCGGGACAAACGCTGCCCATATGGATTCATGCCCACAAGCT
CATTCGATTGCGTGTTATAAACTTATCATCTCGAGCACCGCAGCGCCTGA
GTGCCCGAACAGAAGTGGCAGTAGCCCCGAGTTTACGGCCCAAGCCTCTT
CCTTCCTCAAGCGACAGTAATAATGCCTTAACTACCACCTATCCCGCTAG
TCCTCCTTTGCGCTTACAGCCATTGCCGGCTCGGAAAAGGGATCGACCGT
CCTTGGCCCAGACGGGAGTATTTATTCACCCCGCTACGTTTCGTGCTGCC
TTGGGCTTTCCTTTAAGTGGAGAGGAAAAAGGGAGCATTGGAGGATATAA
AGACGGCTGCAATAATGGCCACGAGAATCAAGAAAGAGAAGGAGGAGGAG
GGGGAGGAGGAAAACTGAAGGATGGAGCCAGCAAGCTCGTCGCCGTCTGG
CGCGACTGCCTCCTCCCCTCCTCACCCCAGATTTCCCATCCCAGCCAACA
CCAACACCAACGCCATCCCACCTCCTCCTCTCCTCCATCTCTTTCTTCCT
TGCTCCCGTTCACCTCCTCCTCACCCTCCTCTTCCAATTTTACCGCCGTC
GGCGTCCTCCACCTCTCCTCAGCAGTTCTCCCCGGGCACATAATGCTGAG
CAAAGCCCTACGTTTGCAGCTACAGGTCCAACCCTTCTCCCTCCTCCGAC
TGCGGCGTCTCTCTCCTCTTCAGTGTCCCCTCCAGACTGCTGTTATGACG
CTGCACCCGTTGCAATGGATGATGCTTCCTCCTGCTCTTTCCTCCGAGAT
GACACCTCCACGAGCGCGTCTCCCGTCTTCTTCGTGGGATTTGATGAAAG
AGGGCCGGGAGGAAGAGGAAGAGAATGGCGAAAATTTTGAAGAAGAAGAA
GCCGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGTTGGCTTTCCTTCAGGGAGGGCTGCCCAATAGCATCTTCAGCAATA
ACTACTATTGCAGAAACATGCAGCAGCAACAACAACAACAGCAACAGCAA
CAGCAACAACAACAACAGCAGGAGCAACAACATCACCAAGAGCGTTTACT
TGTGGCTGCCGGTCCTGAAGGGAAGACAATGTGGGTTGCCCTTCAGGAAT
GGGTTAAGATTGAAAGCGCCCGCGCTGGGGGCATTAGAGGAAACATTTTC
CTCGCTGATGGTGCGGTGTTACTCCTCCCCCTCCCTCCCTCCCTCCCATC
GCCAAAGCAGGAGCAGCAGAAGGGAAGGAGACGGTTTCAAGCGTTTCAAT
TGTCGATTCGTTCTGCAGTGCCCTCTCCACCTTCCCCTCTGTATGTGGCT
TTGACGGCGGCCCCTAACGGGATGCGACTGGGCAAGGTAATACCACGGGC
TTGGACGGCCGAAGAGACGAGGAAGGGGGGGAAGCCAATGTCCAAGCGGC
GGAGATAGCGGAGCATGTCTGGGAGCTACTGCAGGATCTGAGGGAGGGGG
GAAGGGCGAGGGAGGCGGTAATGAGGGAAGGGGGAGGGGGGGGAAGGGTG
ATGATGATGATGCGGAGCAGGAGGAAGGAGGAGGAAAAGCAGACGTCGAT
CAATGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGGAACAACAACGACG
ACAACAACAACAACAACATCAAGTATAAAAAAGACGCGGAGAGGGCAAAC
ACCCACGACCGAATGTCGACAGCCTGGGCTGTGCTCCAAGCCGCTGCTGT
CAGCGGAGCAGTCGGAGTAGTTGTGACGGCCAAGGATCCCACCCTCCTCC
ACGCCTCCCTACGTCGTCCGGGCGGTCTGGAGGCACTGGTAGAGATCCCT
CCTTTGGATGCGAAGGCCCGGGAAGGCATATTATCCG back to topprotein sequence of jgi.p|Nanoce1779_2|116726 >mRNA_6919-protein ID=mRNA_6919-protein|Name=jgi.p|Nanoce1779_2|116726|organism=Nannochloropsis oceanica|type=polypeptide|length=631bp
MRLQIKPGLRHCFVALPLAFTHKLREDAAAASGTVVLDLRWEAPQGGECR
AYACWNGAITSTSGGSGRSSNVGGNDVLEMDEAFAHCLGLGLTSAANRQV
HVRVQRAEVVEFPGRLELEPCTPDDWDLVELHAGYLEGEILRQVAVVFAG
QTLPIWIHAHKLIRLRVINLSSRAPQRLSARTEVAVAPSLRPKPLPSSSD
SNNALTTTYPASPPLRLQPLPARKRDRPSLAQTGVFIHPATFRAALGFPL
SGEEKGSIGGYKDGCNNGHENQEREGGGGGGGKLKDGASKLVAVWRDCLL
PSSPQISHPSQHQHQRHPTSSSPPSLSSLLPFTSSSPSSSNFTAVGVLHL
SSAVLPGHIMLSKALRLQLQVQPFSLLRLRRLSPLQCPLQTAVMTLHPLQ
WMMLPPALSSEMTPPRARLPSSSWDLMKEGREEEEENGENFEEEEAEEEE
EEEEEEEEEEEEELAFLQGGLPNSIFSNNYYCRNMQQQQQQQQQQQQQQQ
QQEQQHHQERLLVAAGPEGKTMWVALQEWVKIESARAGGIRGNIFLADGA
VLLLPLPPSLPSPKQEQQKGRRRFQAFQLSIRSAVPSPPSPLYVALTAAP
NGMRLGKVIPRAWTAEETRKGGKPMSKRRR* back to topmRNA from alignment at scaffold_17:428434..431362- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6919 ID=mRNA_6919|Name=jgi.p|Nanoce1779_2|116726|organism=Nannochloropsis oceanica|type=mRNA|length=2929bp|location=Sequence derived from alignment at scaffold_17:428434..431362- (Nannochloropsis oceanica)
AACCCCTCAGTACTTAACCCACAACCCCCCCACGTACACCCTCACAGGGA
TAAAAAGGACGTCAAGAGAGGGTGAAAGCATTGCAGGGAAGAGTGCCTGG
TCCTATCCTTTGCCATTTTCTACTGCCTAGCTCCCCACGGAAGCCTCGCT
CAATTCCAACTTTTCATGCGCCTACAGATCAAGCCTGGTCTGCGACATTG
CTTCGTGGCCCTGCCCTTGGCCTTCACCCACAAGCTCCGCGAAGATGCTG
CCGCTGCCTCTGGCACCGTGGTGCTGGACCTGCGGTGGGAGGCGCCACAA
GGTGGAGAGTGCCGGGCGTACGCTTGTTGGAATGGAGCCATCACCAGCAC
GAGCGGTGGCAGTGGCAGGAGCAGCAATGTCGGTGGAAACGACGTGCTGG
AGATGGATGAGGCCTTCGCGCATTGCCTTGGGCTCGGACTTACGTCAGCT
GCGAACCGACAGGTCCACGTGCGGGTGCAGCGGGCGGAGGTGGTGGAGTT
TCCAGGTCGGTTAGAGCTGGAGCCCTGCACGCCCGATGACTGGGACCTGG
TGGAGCTTCACGCCGGATACCTCGAAGGAGAGATCTTGCGGCAAGTCGCC
GTGGTGTTTGCGGGACAAACGCTGCCCATATGGATTCATGCCCACAAGCT
CATTCGATTGCGTGTTATAAACTTATCATCTCGAGCACCGCAGCGCCTGA
GTGCCCGAACAGAAGTGGCAGTAGCCCCGAGTTTACGGCCCAAGCCTCTT
CCTTCCTCAAGCGACAGTAATAATGCCTTAACTACCACCTATCCCGCTAG
TCCTCCTTTGCGCTTACAGCCATTGCCGGCTCGGAAAAGGGATCGACCGT
CCTTGGCCCAGACGGGAGTATTTATTCACCCCGCTACGTTTCGTGCTGCC
TTGGGCTTTCCTTTAAGTGGAGAGGAAAAAGGGAGCATTGGAGGATATAA
AGACGGCTGCAATAATGGCCACGAGAATCAAGAAAGAGAAGGAGGAGGAG
GGGGAGGAGGAAAACTGAAGGATGGAGCCAGCAAGCTCGTCGCCGTCTGG
CGCGACTGCCTCCTCCCCTCCTCACCCCAGATTTCCCATCCCAGCCAACA
CCAACACCAACGCCATCCCACCTCCTCCTCTCCTCCATCTCTTTCTTCCT
TGCTCCCGTTCACCTCCTCCTCACCCTCCTCTTCCAATTTTACCGCCGTC
GGCGTCCTCCACCTCTCCTCAGCAGTTCTCCCCGGGCACATAATGCTGAG
CAAAGCCCTACGTTTGCAGCTACAGGTCCAACCCTTCTCCCTCCTCCGAC
TGCGGCGTCTCTCTCCTCTTCAGTGTCCCCTCCAGACTGCTGTTATGACG
CTGCACCCGTTGCAATGGATGATGCTTCCTCCTGCTCTTTCCTCCGAGAT
GACACCTCCACGAGCGCGTCTCCCGTCTTCTTCGTGGGATTTGATGAAAG
AGGGCCGGGAGGAAGAGGAAGAGAATGGCGAAAATTTTGAAGAAGAAGAA
GCCGAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGTTGGCTTTCCTTCAGGGAGGGCTGCCCAATAGCATCTTCAGCAATA
ACTACTATTGCAGAAACATGCAGCAGCAACAACAACAACAGCAACAGCAA
CAGCAACAACAACAACAGCAGGAGCAACAACATCACCAAGAGCGTTTACT
TGTGGCTGCCGGTCCTGAAGGGAAGACAATGTGGGTTGCCCTTCAGGAAT
GGGTTAAGATTGAAAGCGCCCGCGCTGGGGGCATTAGAGGAAACATTTTC
CTCGCTGATGGTGCGGTGTTACTCCTCCCCCTCCCTCCCTCCCTCCCATC
GCCAAAGCAGGAGCAGCAGAAGGGAAGGAGACGGTTTCAAGCGTTTCAAT
TGTCGATTCGTTCTGCAGTGCCCTCTCCACCTTCCCCTCTGTATGTGGCT
TTGACGGCGGCCCCTAACGGGATGCGACTGGGCAAGGTAATACCACGGGC
TTGGACGGCCGAAGAGTACGAGGAGGAAGTGGACATAGTCGGGGGAGGAG
GAGGAGGAGAAGGGAGGAGGAGGAGAAAGCGAAGGAGTGGTGGTGGTGGG
AAGGAGGGGTTTTTGGGAGGGAGGGAAGCACAGCTGCAAGCCTGCTTGAA
TCATCTCGCGCCTATTTTGGATGGAGAGGCTGCAGCGCTGCGGCTGTGCA
CTGGCATATCCCTACCAGGAGGATTGCTTATATATGGGCAAGGGAGCAGT
GGAAAGACTTCTCTGGGCCATGCCTTGGCAGCACGTCTCTCCTCCTCCTC
CTCGGCGGTTGCGACAACATGGGTGAACTGCTCCTCGCTTCGTGGGCTCA
GGATGAATGTGGTCCTTCAGACATTGACTCACGCCCTGGAGAGCGCTCAG
CACAAGGCACCTTCTCTATTGATTTTGGACGACCTCGATGGGCTGTGTCC
GGCTGAGGACGAGGAAGGGGGGGAAGCCAATGTCCAAGCGGCGGAGATAG
CGGAGCATGTCTGGGAGCTACTGCAGGATCTGAGGGAGGGGGGAAGGGCG
AGGGAGGCGGTAATGAGGGAAGGGGGAGGGGGGGGAAGGGTGATGATGAT
GATGCGGAGCAGGAGGAAGGAGGAGGAAAAGCAGACGTCGATCAATGGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCGGGAACAACAACGACGACAACAAC
AACAACAACATCAAGTATAAAAAAGACGCGGAGAGGGCAAACACCCACGA
CCGAATGTCGACAGCCTGGGCTGTGCTCCAAGCCGCTGCTGTCAGCGGAG
CAGTCGGAGTAGTTGTGACGGCCAAGGATCCCACCCTCCTCCACGCCTCC
CTACGTCGTCCGGGCGGTCTGGAGGCACTGGTAGAGATCCCTCCTTTGGA
TGCGAAGGCCCGGGAAGGCATATTATCCG back to topCoding sequence (CDS) from alignment at scaffold_17:428434..431362- >mRNA_6919 ID=mRNA_6919|Name=jgi.p|Nanoce1779_2|116726|organism=Nannochloropsis oceanica|type=CDS|length=3786bp|location=Sequence derived from alignment at scaffold_17:428434..431362- (Nannochloropsis oceanica)
GACGAGGAAGGGGGGGAAGCCAATGTCCAAGCGGCGGAGATAGATGCGCC
TACAGATCAAGCCTGGTCTGCGACATTGCTTCGTGGCCCTGCCCTTGGCC
TTCACCCACAAGCTCCGCGAAGATGCTGCCGCTGCCTCTGGCACCGTGGT
GCTGGACCTGCGGTGGGAGGCGCCACAAGGTGGAGAGTGCCGGGCGTACG
CTTGTTGGAATGGAGCCATCACCAGCACGAGCGGTGGCAGTGGCAGGAGC
AGCAATGTCGGTGGAAACGACGTGCTGGAGATGGATGAGGCCTTCGCGCA
TTGCCTTGGGCTCGGACTTACGTCAGCTGCGAACCGACAGGTCCACGTGC
GGGTGCAGCGGGCGGAGGTGGTGGAGTTTCCAGGTCGGTTAGAGCTGGAG
CCCTGCACGCCCGATGACTGGGACCTGGTGGAGCTTCACGCCGGATACCT
CGAAGGAGAGATCTTGCGGCAAGTCGCCGTGGTGTTTGCGGGACAAACGC
TGCCCATATGGATTCATGCCCACAAGCTCATTCGATTGCGTGTTATAAAC
TTATCATCTCGAGCACCGCAGCGCCTGAGTGCCCGAACAGAAGTGGCAGT
AGCCCCGAGTTTACGGCCCAAGCCTCTTCCTTCCTCAAGCGACAGTAATA
ATGCCTTAACTACCACCTATCCCGCTAGTCCTCCTTTGCGCTTACAGCCA
TTGCCGGCTCGGAAAAGGGATCGACCGTCCTTGGCCCAGACGGGAGTATT
TATTCACCCCGCTACGTTTCGTGCTGCCTTGGGCTTTCCTTTAAGTGGAG
AGGAAAAAGGGAGCATTGGAGGATATAAAGACGGCTGCAATAATGGCCAC
GAGAATCAAGAAAGAGAAGGAGGAGGAGGGGGAGGAGGAAAACTGAAGGA
TGGAGCCAGCAAGCTCGTCGCCGTCTGGCGCGACTGCCTCCTCCCCTCCT
CACCCCAGATTTCCCATCCCAGCCAACACCAACACCAACGCCATCCCACC
TCCTCCTCTCCTCCATCTCTTTCTTCCTTGCTCCCGTTCACCTCCTCCTC
ACCCTCCTCTTCCAATTTTACCGCCGTCGGCGTCCTCCACCTCTCCTCAG
CAGTTCTCCCCGGGCACATAATGCTGAGCAAAGCCCTACGTTTGCAGCTA
CAGGTCCAACCCTTCTCCCTCCTCCGACTGCGGCGTCTCTCTCCTCTTCA
GTGTCCCCTCCAGACTGCTGTTATGACGCTGCACCCGTTGCAATGGATGA
TGCTTCCTCCTGCTCTTTCCTCCGAGATGACACCTCCACGAGCGCGTCTC
CCGTCTTCTTCGTGGGATTTGATGAAAGAGGGCCGGGAGGAAGAGGAAGA
GAATGGCGAAAATTTTGAAGAAGAAGAAGCCGAAGAGGAAGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGTTGGCTTTCCTTCAGGGA
GGGCTGCCCAATAGCATCTTCAGCAATAACTACTATTGCAGAAACATGCA
GCAGCAACAACAACAACAGCAACAGCAACAGCAACAACAACAACAGCAGG
AGCAACAACATCACCAAGAGCGTTTACTTGTGGCTGCCGGTCCTGAAGGG
AAGACAATGTGGGTTGCCCTTCAGGAATGGGTTAAGATTGAAAGCGCCCG
CGCTGGGGGCATTAGAGGAAACATTTTCCTCGCTGATGGTGCGGTGTTAC
TCCTCCCCCTCCCTCCCTCCCTCCCATCGCCAAAGCAGGAGCAGCAGAAG
GGAAGGAGACGGTTTCAAGCGTTTCAATTGTCGATTCGTTCTGCAGTGCC
CTCTCCACCTTCCCCTCTGTATGTGGCTTTGACGGCGGCCCCTAACGGGA
TGCGACTGGGCAAGGTAATACCACGGGCTTGGACGGCCGAAGAGACGAGG
AAGGGGGGGAAGCCAATGTCCAAGCGGCGGAGATAGATGCGCCTACAGAT
CAAGCCTGGTCTGCGACATTGCTTCGTGGCCCTGCCCTTGGCCTTCACCC
ACAAGCTCCGCGAAGATGCTGCCGCTGCCTCTGGCACCGTGGTGCTGGAC
CTGCGGTGGGAGGCGCCACAAGGTGGAGAGTGCCGGGCGTACGCTTGTTG
GAATGGAGCCATCACCAGCACGAGCGGTGGCAGTGGCAGGAGCAGCAATG
TCGGTGGAAACGACGTGCTGGAGATGGATGAGGCCTTCGCGCATTGCCTT
GGGCTCGGACTTACGTCAGCTGCGAACCGACAGGTCCACGTGCGGGTGCA
GCGGGCGGAGGTGGTGGAGTTTCCAGGTCGGTTAGAGCTGGAGCCCTGCA
CGCCCGATGACTGGGACCTGGTGGAGCTTCACGCCGGATACCTCGAAGGA
GAGATCTTGCGGCAAGTCGCCGTGGTGTTTGCGGGACAAACGCTGCCCAT
ATGGATTCATGCCCACAAGCTCATTCGATTGCGTGTTATAAACTTATCAT
CTCGAGCACCGCAGCGCCTGAGTGCCCGAACAGAAGTGGCAGTAGCCCCG
AGTTTACGGCCCAAGCCTCTTCCTTCCTCAAGCGACAGTAATAATGCCTT
AACTACCACCTATCCCGCTAGTCCTCCTTTGCGCTTACAGCCATTGCCGG
CTCGGAAAAGGGATCGACCGTCCTTGGCCCAGACGGGAGTATTTATTCAC
CCCGCTACGTTTCGTGCTGCCTTGGGCTTTCCTTTAAGTGGAGAGGAAAA
AGGGAGCATTGGAGGATATAAAGACGGCTGCAATAATGGCCACGAGAATC
AAGAAAGAGAAGGAGGAGGAGGGGGAGGAGGAAAACTGAAGGATGGAGCC
AGCAAGCTCGTCGCCGTCTGGCGCGACTGCCTCCTCCCCTCCTCACCCCA
GATTTCCCATCCCAGCCAACACCAACACCAACGCCATCCCACCTCCTCCT
CTCCTCCATCTCTTTCTTCCTTGCTCCCGTTCACCTCCTCCTCACCCTCC
TCTTCCAATTTTACCGCCGTCGGCGTCCTCCACCTCTCCTCAGCAGTTCT
CCCCGGGCACATAATGCTGAGCAAAGCCCTACGTTTGCAGCTACAGGTCC
AACCCTTCTCCCTCCTCCGACTGCGGCGTCTCTCTCCTCTTCAGTGTCCC
CTCCAGACTGCTGTTATGACGCTGCACCCGTTGCAATGGATGATGCTTCC
TCCTGCTCTTTCCTCCGAGATGACACCTCCACGAGCGCGTCTCCCGTCTT
CTTCGTGGGATTTGATGAAAGAGGGCCGGGAGGAAGAGGAAGAGAATGGC
GAAAATTTTGAAGAAGAAGAAGCCGAAGAGGAAGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGTTGGCTTTCCTTCAGGGAGGGCTGC
CCAATAGCATCTTCAGCAATAACTACTATTGCAGAAACATGCAGCAGCAA
CAACAACAACAGCAACAGCAACAGCAACAACAACAACAGCAGGAGCAACA
ACATCACCAAGAGCGTTTACTTGTGGCTGCCGGTCCTGAAGGGAAGACAA
TGTGGGTTGCCCTTCAGGAATGGGTTAAGATTGAAAGCGCCCGCGCTGGG
GGCATTAGAGGAAACATTTTCCTCGCTGATGGTGCGGTGTTACTCCTCCC
CCTCCCTCCCTCCCTCCCATCGCCAAAGCAGGAGCAGCAGAAGGGAAGGA
GACGGTTTCAAGCGTTTCAATTGTCGATTCGTTCTGCAGTGCCCTCTCCA
CCTTCCCCTCTGTATGTGGCTTTGACGGCGGCCCCTAACGGGATGCGACT
GGGCAAGGTAATACCACGGGCTTGGACGGCCGAAGA back to top
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