jgi.p|Nanoce1779_2|596776, mRNA_6918 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|596776
Unique Name	mRNA_6918
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1966
Alignment location	scaffold_17:426776..428766 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	596862
Track	FilteredModels2
ProteinId	596776

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:426776..428766 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596776	gene_6918	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596776	mRNA_6918-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6918	CDS_6918	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:426776..428766-
coding sequence from alignment at scaffold_17:426776..428766-

mRNA sequence

>mRNA_6918 ID=mRNA_6918|Name=jgi.p|Nanoce1779_2|596776|organism=Nannochloropsis oceanica|type=mRNA|length=1966bp
TGATGATGCGGAGCAGGAGGAAGGAGGAGGAAAAGCAGACGTCGATCAAT
GGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGGAACAACAACGACGACAA
CAACAACAACAACATCAAGTATAAAAAAGACGCGGAGAGGGCAAACACCC
ACGACCGAATGTCGACAGCCTGGGCTGTGCTCCAAGCCGCTGCTGTCAGC
GGAGCAGTCGGAGTAGTTGTGACGGCCAAGGATCCCACCCTCCTCCACGC
CTCCCTACGTCGTCCGGGCGGTCTGGAGGCACTGGTAGAGATCCCTCCTT
TGGATGCGAAGGCCCGGGAAGGCATATTATCCGTCCTCCTTGCCTCCCAC
TCGAGCAACCACCCCCTCCCGTCCTCCGCGTCTTCCTCCTCGCCTTCGTC
CTCCGGGATAGACTTCGCCACCCTATCTGCCCGTCTTGAAGGCTGTACCC
CCTCCGACCTCGAGCTTCTCTCAACCGCACCCTCTCCTTCTCTACCCCCC
CCCCCCTCCGCCGACCCTCGTCCTGCATTGCTCCCCTGCGACTTTACTGT
GGCCCTTGACGGATTCACGGCCGCATCTCTTCGCAATGCCCGGCTGTCGT
CCAGCAGCACCACATGGGCCGACATCGGTGGCCTCCAAGCTATCAAAAAC
GAAGTGCGAGATGTCCTGGAGACCCCTGTCAAGTTCGCGCCACTTTACTC
TCGTCTCCCCACACGTTTGCCGACCGGCTTGCTGTTTTATGGGCCGCCGG
GGTGTGGCAAAACCCTGTTGGCAGGGGCTGTCGCGACGGAGTGTGGGTTG
AATTTTATCTCCGTGAAAGGCTCAGAGGTTTTAGATAAATATATAGGCGC
GAGTGAGCAAGCGGTGAGGGTGTTGTTCGCCCGCGCCACGGCGGCTGCGC
CATGTGTCTTGTTTTTTGATGAGTTTGAAGCATTGGCCCCGCGGAGGGGA
AGCGATAATACAGGAGTGACTGATCGAGTGGTGAACCAGTTGTTGACTTT
CTTAGACGGTGTGGAGGGGCGGAGTGGGGTGTATGTGGTGGGAGCAACGA
GTCGGCCTGATATGGTCGATCCTGCTTTGCTTCGACCCGGGCGATTAGAC
AGGCAAATATATCTTGGTTTTCCCAATGAAGAGGAACGAGGAGAGATCCT
TAAGGCAGTCTCACGAAATATGAAGCTGACCAGCGAGGCTGTGATGGCAT
TGGACGAGGTGGCAAAGGAGGAAGGGGCGGAGCTCCTGACGGGTGCAGAT
TTACAGGCTCTGGTAAGCACGGCGCAGTTGCAGGCGGTGCATGAAAAGTT
GGCCGGGATTGGTTTGAAGGAAAAGAAGAAAAAAGCAGAGAAGGGGGAAG
AGAGAAGAGACGGGAGTGGAGTGGTATTGACGGCAGAGCACATCTGGGCG
GCGTTTTCAGCGACCAGGCCGTCGCTGCCCCCGGCGGAACGGGCGCAGCT
TCAGTCAGTGTATGATAAGTTTCGGAGTGCCCGTGATGGAAAGTACAAGG
TGGCTAGCGCCACAGATGATGGGAAGCATTTGCGGACGGCATTAAAGTAA
TCTAAGATGTAAACAAAGAGACGTTTTTTTTGGTTATGAAAAACACTTTT
TTGAATACCCGGATATCGCCATTGCTTCATGCGTCTATTTCGTGAATTCA
CTGGGAGGGTGCTCCTGTAAGGGTAGGGTGAGGTGGTTGAGTGGTGGTGC
CACGCACCACCCAACCAAACATACCTATGACCAACACAGATCTCCACAAG
AGCCATGCTCGTTCGTGTGCGATGGCCGTGTAGCAAGCACAAGGATCCTC
TTGCGTCTGTGGCGGCGGAAGCGACAGAAATGCAGAGGCCAACAAGCAGC
GACGAGACACACCCCCTCTCTCTACACATAAACCAAGTCCGCCGCAACGA
GCCGGACTCACCGCGAACATGATCTCAAGCTCCCTCTTTCCTACCACACA
CCATCATAGATCACCC

protein sequence of jgi.p|Nanoce1779_2|596776

>mRNA_6918-protein ID=mRNA_6918-protein|Name=jgi.p|Nanoce1779_2|596776|organism=Nannochloropsis oceanica|type=polypeptide|length=515bp
MRSRRKEEEKQTSINGSSSSSSSSSGNNNDDNNNNNIKYKKDAERANTHD
RMSTAWAVLQAAAVSGAVGVVVTAKDPTLLHASLRRPGGLEALVEIPPLD
AKAREGILSVLLASHSSNHPLPSSASSSSPSSSGIDFATLSARLEGCTPS
DLELLSTAPSPSLPPPPSADPRPALLPCDFTVALDGFTAASLRNARLSSS
STTWADIGGLQAIKNEVRDVLETPVKFAPLYSRLPTRLPTGLLFYGPPGC
GKTLLAGAVATECGLNFISVKGSEVLDKYIGASEQAVRVLFARATAAAPC
VLFFDEFEALAPRRGSDNTGVTDRVVNQLLTFLDGVEGRSGVYVVGATSR
PDMVDPALLRPGRLDRQIYLGFPNEEERGEILKAVSRNMKLTSEAVMALD
EVAKEEGAELLTGADLQALVSTAQLQAVHEKLAGIGLKEKKKKAEKGEER
RDGSGVVLTAEHIWAAFSATRPSLPPAERAQLQSVYDKFRSARDGKYKVA
SATDDGKHLRTALK*

mRNA from alignment at scaffold_17:426776..428766-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6918 ID=mRNA_6918|Name=jgi.p|Nanoce1779_2|596776|organism=Nannochloropsis oceanica|type=mRNA|length=1991bp|location=Sequence derived from alignment at scaffold_17:426776..428766- (Nannochloropsis oceanica)
TGATGATGCGGAGCAGGAGGAAGGAGGAGGAAAAGCAGACGTCGATCAAT
GGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGGGAACAACAACGACGACAA
CAACAACAACAACATCAAGTATAAAAAAGACGCGGAGAGGGCAAACACCC
ACGACCGAATGTCGACAGCCTGGGCTGTGCTCCAAGCCGCTGCTGTCAGC
GGAGCAGTCGGAGTAGTTGTGACGGCCAAGGATCCCACCCTCCTCCACGC
CTCCCTACGTCGTCCGGGCGGTCTGGAGGCACTGGTAGAGATCCCTCCTT
TGGATGCGAAGGCCCGGGAAGGCATATTATCCGTCCTCCTTGCCTCCCAC
TCGAGCAACCACCCCCTCCCGTCCTCCGCGTCTTCCTCCTCGCCTTCGTC
CTCCGGGATAGACTTCGCCACCCTATCTGCCCGTCTTGAAGGCTGTACCC
CCTCCGACCTCGAGCTTCTCGTAACCCGCGCCCTCCACGCCGCAGTCAAC
CGCACCCTCTCCTTCTCTACCCCCCCCCCCCTCCGCCGACCCTCGTCCTG
CATTGCTCCCCTGCGACTTTACTGTGGCCCTTGACGGATTCACGGCCGCA
TCTCTTCGCAATGCCCGGCTGTCGTCCAGCAGCACCACATGGGCCGACAT
CGGTGGCCTCCAAGCTATCAAAAACGAAGTGCGAGATGTCCTGGAGACCC
CTGTCAAGTTCGCGCCACTTTACTCTCGTCTCCCCACACGTTTGCCGACC
GGCTTGCTGTTTTATGGGCCGCCGGGGTGTGGCAAAACCCTGTTGGCAGG
GGCTGTCGCGACGGAGTGTGGGTTGAATTTTATCTCCGTGAAAGGCTCAG
AGGTTTTAGATAAATATATAGGCGCGAGTGAGCAAGCGGTGAGGGTGTTG
TTCGCCCGCGCCACGGCGGCTGCGCCATGTGTCTTGTTTTTTGATGAGTT
TGAAGCATTGGCCCCGCGGAGGGGAAGCGATAATACAGGAGTGACTGATC
GAGTGGTGAACCAGTTGTTGACTTTCTTAGACGGTGTGGAGGGGCGGAGT
GGGGTGTATGTGGTGGGAGCAACGAGTCGGCCTGATATGGTCGATCCTGC
TTTGCTTCGACCCGGGCGATTAGACAGGCAAATATATCTTGGTTTTCCCA
ATGAAGAGGAACGAGGAGAGATCCTTAAGGCAGTCTCACGAAATATGAAG
CTGACCAGCGAGGCTGTGATGGCATTGGACGAGGTGGCAAAGGAGGAAGG
GGCGGAGCTCCTGACGGGTGCAGATTTACAGGCTCTGGTAAGCACGGCGC
AGTTGCAGGCGGTGCATGAAAAGTTGGCCGGGATTGGTTTGAAGGAAAAG
AAGAAAAAAGCAGAGAAGGGGGAAGAGAGAAGAGACGGGAGTGGAGTGGT
ATTGACGGCAGAGCACATCTGGGCGGCGTTTTCAGCGACCAGGCCGTCGC
TGCCCCCGGCGGAACGGGCGCAGCTTCAGTCAGTGTATGATAAGTTTCGG
AGTGCCCGTGATGGAAAGTACAAGGTGGCTAGCGCCACAGATGATGGGAA
GCATTTGCGGACGGCATTAAAGTAATCTAAGATGTAAACAAAGAGACGTT
TTTTTTGGTTATGAAAAACACTTTTTTGAATACCCGGATATCGCCATTGC
TTCATGCGTCTATTTCGTGAATTCACTGGGAGGGTGCTCCTGTAAGGGTA
GGGTGAGGTGGTTGAGTGGTGGTGCCACGCACCACCCAACCAAACATACC
TATGACCAACACAGATCTCCACAAGAGCCATGCTCGTTCGTGTGCGATGG
CCGTGTAGCAAGCACAAGGATCCTCTTGCGTCTGTGGCGGCGGAAGCGAC
AGAAATGCAGAGGCCAACAAGCAGCGACGAGACACACCCCCTCTCTCTAC
ACATAAACCAAGTCCGCCGCAACGAGCCGGACTCACCGCGAACATGATCT
CAAGCTCCCTCTTTCCTACCACACACCATCATAGATCACCC

Coding sequence (CDS) from alignment at scaffold_17:426776..428766-

>mRNA_6918 ID=mRNA_6918|Name=jgi.p|Nanoce1779_2|596776|organism=Nannochloropsis oceanica|type=CDS|length=3090bp|location=Sequence derived from alignment at scaffold_17:426776..428766- (Nannochloropsis oceanica)
TCAACCGCACCCTCTCCTTCTCTACCCCCCCCCCCCTCCGCCGACCCTCG
TCCTGCATTGCTCCCCTGCGACTTTACTGTGGCCCTTGACGGATTCACGG
CCGCATCTCTTCGCAATGCCCGGCTGTCGTCCAGCAGCACCACATGGGCC
GACATCGGTGGCCTCCAAGCTATCAAAAACGAAGTGCGAGATGTCCTGGA
GACCCCTGTCAAGTTCGCGCCACTTTACTCTCGTCTCCCCACACGTTTGC
CGACCGGCTTGCTGTTTTATGGGCCGCCGGGGTGTGGCAAAACCCTGTTG
GCAGGGGCTGTCGCGACGGAGTGTGGGTTGAATTTTATCTCCGTGAAAGG
CTCAGAGGTTTTAGATAAATATATAGGCGCGAGTGAGCAAGCGGTGAGGG
TGTTGTTCGCCCGCGCCACGGCGGCTGCGCCATGTGTCTTGTTTTTTGAT
GAGTTTGAAGCATTGGCCCCGCGGAGGGGAAGCGATAATACAGGAGTGAC
TGATCGAGTGGTGAACCAGTTGTTGACTTTCTTAGACGGTGTGGAGGGGC
GGAGTGGGGTGTATGTGGTGGGAGCAACGAGTCGGCCTGATATGGTCGAT
CCTGCTTTGCTTCGACCCGGGCGATTAGACAGGCAAATATATCTTGGTTT
TCCCAATGAAGAGGAACGAGGAGAGATCCTTAAGGCAGTCTCACGAAATA
TGAAGCTGACCAGCGAGGCTGTGATGGCATTGGACGAGGTGGCAAAGGAG
GAAGGGGCGGAGCTCCTGACGGGTGCAGATTTACAGGCTCTGGTAAGCAC
GGCGCAGTTGCAGGCGGTGCATGAAAAGTTGGCCGGGATTGGTTTGAAGG
AAAAGAAGAAAAAAGCAGAGAAGGGGGAAGAGAGAAGAGACGGGAGTGGA
GTGGTATTGACGGCAGAGCACATCTGGGCGGCGTTTTCAGCGACCAGGCC
GTCGCTGCCCCCGGCGGAACGGGCGCAGCTTCAGTCAGTGTATGATAAGT
TTCGGAGTGCCCGTGATGGAAAGTACAAGGTGGCTAGCGCCACAGATGAT
GGGAAGCATTTGCGGACGGCATTAAAGTAAATGCGGAGCAGGAGGAAGGA
GGAGGAAAAGCAGACGTCGATCAATGGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCGGGAACAACAACGACGACAACAACAACAACAACATCAAGTATAAA
AAAGACGCGGAGAGGGCAAACACCCACGACCGAATGTCGACAGCCTGGGC
TGTGCTCCAAGCCGCTGCTGTCAGCGGAGCAGTCGGAGTAGTTGTGACGG
CCAAGGATCCCACCCTCCTCCACGCCTCCCTACGTCGTCCGGGCGGTCTG
GAGGCACTGGTAGAGATCCCTCCTTTGGATGCGAAGGCCCGGGAAGGCAT
ATTATCCGTCCTCCTTGCCTCCCACTCGAGCAACCACCCCCTCCCGTCCT
CCGCGTCTTCCTCCTCGCCTTCGTCCTCCGGGATAGACTTCGCCACCCTA
TCTGCCCGTCTTGAAGGCTGTACCCCCTCCGACCTCGAGCTTCTCTCAAC
CGCACCCTCTCCTTCTCTACCCCCCCCCCCCTCCGCCGACCCTCGTCCTG
CATTGCTCCCCTGCGACTTTACTGTGGCCCTTGACGGATTCACGGCCGCA
TCTCTTCGCAATGCCCGGCTGTCGTCCAGCAGCACCACATGGGCCGACAT
CGGTGGCCTCCAAGCTATCAAAAACGAAGTGCGAGATGTCCTGGAGACCC
CTGTCAAGTTCGCGCCACTTTACTCTCGTCTCCCCACACGTTTGCCGACC
GGCTTGCTGTTTTATGGGCCGCCGGGGTGTGGCAAAACCCTGTTGGCAGG
GGCTGTCGCGACGGAGTGTGGGTTGAATTTTATCTCCGTGAAAGGCTCAG
AGGTTTTAGATAAATATATAGGCGCGAGTGAGCAAGCGGTGAGGGTGTTG
TTCGCCCGCGCCACGGCGGCTGCGCCATGTGTCTTGTTTTTTGATGAGTT
TGAAGCATTGGCCCCGCGGAGGGGAAGCGATAATACAGGAGTGACTGATC
GAGTGGTGAACCAGTTGTTGACTTTCTTAGACGGTGTGGAGGGGCGGAGT
GGGGTGTATGTGGTGGGAGCAACGAGTCGGCCTGATATGGTCGATCCTGC
TTTGCTTCGACCCGGGCGATTAGACAGGCAAATATATCTTGGTTTTCCCA
ATGAAGAGGAACGAGGAGAGATCCTTAAGGCAGTCTCACGAAATATGAAG
CTGACCAGCGAGGCTGTGATGGCATTGGACGAGGTGGCAAAGGAGGAAGG
GGCGGAGCTCCTGACGGGTGCAGATTTACAGGCTCTGGTAAGCACGGCGC
AGTTGCAGGCGGTGCATGAAAAGTTGGCCGGGATTGGTTTGAAGGAAAAG
AAGAAAAAAGCAGAGAAGGGGGAAGAGAGAAGAGACGGGAGTGGAGTGGT
ATTGACGGCAGAGCACATCTGGGCGGCGTTTTCAGCGACCAGGCCGTCGC
TGCCCCCGGCGGAACGGGCGCAGCTTCAGTCAGTGTATGATAAGTTTCGG
AGTGCCCGTGATGGAAAGTACAAGGTGGCTAGCGCCACAGATGATGGGAA
GCATTTGCGGACGGCATTAAAGTAAATGCGGAGCAGGAGGAAGGAGGAGG
AAAAGCAGACGTCGATCAATGGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
GGGAACAACAACGACGACAACAACAACAACAACATCAAGTATAAAAAAGA
CGCGGAGAGGGCAAACACCCACGACCGAATGTCGACAGCCTGGGCTGTGC
TCCAAGCCGCTGCTGTCAGCGGAGCAGTCGGAGTAGTTGTGACGGCCAAG
GATCCCACCCTCCTCCACGCCTCCCTACGTCGTCCGGGCGGTCTGGAGGC
ACTGGTAGAGATCCCTCCTTTGGATGCGAAGGCCCGGGAAGGCATATTAT
CCGTCCTCCTTGCCTCCCACTCGAGCAACCACCCCCTCCCGTCCTCCGCG
TCTTCCTCCTCGCCTTCGTCCTCCGGGATAGACTTCGCCACCCTATCTGC
CCGTCTTGAAGGCTGTACCCCCTCCGACCTCGAGCTTCTC

Synonyms

Publications