jgi.p|Nanoce1779_2|596772, mRNA_6916 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|596772
Unique Name	mRNA_6916
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1354
Alignment location	scaffold_17:423203..424704 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	596858
Track	FilteredModels2
ProteinId	596772

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:423203..424704 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596772	gene_6916	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596772	mRNA_6916-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6916	CDS_6916	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:423203..424704+
coding sequence from alignment at scaffold_17:423203..424704+

mRNA sequence

>mRNA_6916 ID=mRNA_6916|Name=jgi.p|Nanoce1779_2|596772|organism=Nannochloropsis oceanica|type=mRNA|length=1354bp
AGCACACAGACCTTGCCCCACTCACCGCCATCACCCTCGTGACGATGGTT
TGCTGGTACCACTTCCACCCCCATCTCACGTGGCATTTGGAAGCCATCAC
TCATGACTTCAGCGACAACTTTTTCGAGACTCTCTTCCGTCCCGACCTTG
TCTACCTCAAGTCTTCAGATCCTTTCGTCTCCCTCCTCTTCATCTCCCTC
TGGTTCGCCTTCCTCACCGGTTTCACGGGATGGATCACGCAAGAATTCTC
CTGGGTTGATCGCATCTGGTCGTTAACCCCTCCGTTCTACGCGTGGCTCT
TCGCCCTACACCCCTTCCTTGCCCTTGGGGAAGCCTGGCCATCTTCGATC
GGGGGCTACTTTTTTGGACGTCCTTTTCTGCTGGCGTGGCTCACCACCTT
ATGGGGCGTGAGGTTGACGTACAACTTTTGGAGGAAGGGGGGCTATGCGG
GGGGAGGAGAGGATTATCGATGGGCTGAAGTGCGGACGTGGTTCTCGCAC
TTCACGTTGCAGATGTTCAATATTTTTTTCATTGCCATATTTCAGAACGT
CCTCCTCCTCCTTCTAGTCATGCCGGCACATTCCGCCTGGGTGGGCCGCA
CCTGGCAACCCCTAACCTGCGTCGACGCTTTCCTCACCATCTTATTCCTA
CTCTGCCTCGCCGCTGAAACAGTCGCCGACCAGCAGCAATGGGAGTTCCA
GCAACGCAAGCGCGCCGCCCTTGCCGCCGCTGCTCCTGCTGCTCCTGCTG
CCCCTGCTGCTCCTGCTGCTCCTGCTGCTCCCATCGCTGCGGCTACTGCC
TCTGGCACCACCACTCCTGCAGGGAGCCCCAGTCGCAAAAACAGAAACAG
AAACAAAAACAAGAACACCAACCAGAACCACAACCACCACAACCCCTCCT
CCCCTCTCCATCGTCTCCTTCCCAAAGAAATCGCCGATGGTTTCTGCCAG
TCCGGCCTTTTTGCCCGCTGCCGCCACCCTAATTTCTCCGCTGAGATAGC
CTTATGGTGGGTCTTTCACATCTTCGTTTACCCCTCCGCGGGGATCCACT
TCGAAAGGAAGCACGATTGGGTCAATCACACCTACTGGCCGTTTTATATT
AATTGGACGATTATCGGGCCGGTGTTGCTGACGTTGCTCTTCCAGGGCTC
GACCGATCTGACTGAGAAGCTGAGTGTGAGGAAGTATCCGAGATACAGGC
AGTATCAGATGAGGGTACCGCGGTTGTGGCCTCTGCTCGGGGACGTGGGG
AAGGAGGCAGTGAAGCACGAGTAGAGAGGAGGTAGGGAGAGAGGGAGGGA
GGGAAGGAGAAGGTTTGGGTCTGGATTTTGGCTTTTGAGCATGCAATGGA
AAAG

protein sequence of jgi.p|Nanoce1779_2|596772

>mRNA_6916-protein ID=mRNA_6916-protein|Name=jgi.p|Nanoce1779_2|596772|organism=Nannochloropsis oceanica|type=polypeptide|length=410bp
MVCWYHFHPHLTWHLEAITHDFSDNFFETLFRPDLVYLKSSDPFVSLLFI
SLWFAFLTGFTGWITQEFSWVDRIWSLTPPFYAWLFALHPFLALGEAWPS
SIGGYFFGRPFLLAWLTTLWGVRLTYNFWRKGGYAGGGEDYRWAEVRTWF
SHFTLQMFNIFFIAIFQNVLLLLLVMPAHSAWVGRTWQPLTCVDAFLTIL
FLLCLAAETVADQQQWEFQQRKRAALAAAAPAAPAAPAAPAAPAAPIAAA
TASGTTTPAGSPSRKNRNRNKNKNTNQNHNHHNPSSPLHRLLPKEIADGF
CQSGLFARCRHPNFSAEIALWWVFHIFVYPSAGIHFERKHDWVNHTYWPF
YINWTIIGPVLLTLLFQGSTDLTEKLSVRKYPRYRQYQMRVPRLWPLLGD
VGKEAVKHE*

mRNA from alignment at scaffold_17:423203..424704+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6916 ID=mRNA_6916|Name=jgi.p|Nanoce1779_2|596772|organism=Nannochloropsis oceanica|type=mRNA|length=1502bp|location=Sequence derived from alignment at scaffold_17:423203..424704+ (Nannochloropsis oceanica)
AGCACACAGACCTTGCCCCACTCACCGCCATCACCCTCGTGACGATGGTT
TGCTGGTACCACTTCCACCCCCATCTCACGTGGCATTTGGAAGCCATCAC
TCATGACTTCAGCGACAACTTTTTCGAGACTCTCTTCCGTCCCGACCTTG
TCTACCTCAAGTCTTCAGATCCTTTCGTCTCCCTCCTCTTCATCTCCCTC
TGGTTCGCCTTCCTCACCGGTTTCACGGGATGGATCACGCAAGAATTCTC
CTGGGTTGATCGCATCTGGTCGTTAACCCCTCCGTTCTACGCGTGGCTCT
TCGCCCTACACCCCTTCCTTGCCCTTGGGGAAGCCTGGCCATCTTCGATC
GGGGGCTACTTTTTTGGACGTCCTTTTCTGCTGGCGTGGCTCACCACCTT
ATGGGGCGTGAGGTTGACGTACAACTTTTGGAGGAAGGGGGGCTATGCGG
GGGGAGGAGAGGATTATCGATGGGCTGAAGTGCGGACGTGGTTCTCGCAC
TTCACGTTGCAGATGTTCAATATTTTTTTCATTGCCATATTTCAGGTACG
TTTATCATTTTTTCACTCCCTTTTTCCCGCTTCTTTCGTGCCTTTTCGTT
TTCCTTCTTTACTTTGTCCTTGACCGCTTTCCTCTCCCCTACTCACCCCT
CCTTCATGCCCCCCCGCCCTCCCTCCCATTTCCCTTCCTGTAGAACGTCC
TCCTCCTCCTTCTAGTCATGCCGGCACATTCCGCCTGGGTGGGCCGCACC
TGGCAACCCCTAACCTGCGTCGACGCTTTCCTCACCATCTTATTCCTACT
CTGCCTCGCCGCTGAAACAGTCGCCGACCAGCAGCAATGGGAGTTCCAGC
AACGCAAGCGCGCCGCCCTTGCCGCCGCTGCTCCTGCTGCTCCTGCTGCC
CCTGCTGCTCCTGCTGCTCCTGCTGCTCCCATCGCTGCGGCTACTGCCTC
TGGCACCACCACTCCTGCAGGGAGCCCCAGTCGCAAAAACAGAAACAGAA
ACAAAAACAAGAACACCAACCAGAACCACAACCACCACAACCCCTCCTCC
CCTCTCCATCGTCTCCTTCCCAAAGAAATCGCCGATGGTTTCTGCCAGTC
CGGCCTTTTTGCCCGCTGCCGCCACCCTAATTTCTCCGCTGAGATAGCCT
TATGGTGGGTCTTTCACATCTTCGTTTACCCCTCCGCGGGGATCCACTTC
GAAAGGAAGCACGATTGGGTCAATCACACCTACTGGCCGTTTTATATTAA
TTGGACGATTATCGGGCCGGTGTTGCTGACGTTGCTCTTCCAGGGCTCGA
CCGATCTGACTGAGAAGCTGAGTGTGAGGAAGTATCCGAGATACAGGCAG
TATCAGATGAGGGTACCGCGGTTGTGGCCTCTGCTCGGGGACGTGGGGAA
GGAGGCAGTGAAGCACGAGTAGAGAGGAGGTAGGGAGAGAGGGAGGGAGG
GAAGGAGAAGGTTTGGGTCTGGATTTTGGCTTTTGAGCATGCAATGGAAA
AG

Coding sequence (CDS) from alignment at scaffold_17:423203..424704+

>mRNA_6916 ID=mRNA_6916|Name=jgi.p|Nanoce1779_2|596772|organism=Nannochloropsis oceanica|type=CDS|length=2460bp|location=Sequence derived from alignment at scaffold_17:423203..424704+ (Nannochloropsis oceanica)
ATGGTTTGCTGGTACCACTTCCACCCCCATCTCACGTGGCATTTGGAAGC
CATCACTCATGACTTCAGCGACAACTTTTTCGAGACTCTCTTCCGTCCCG
ACCTTGTCTACCTCAAGTCTTCAGATCCTTTCGTCTCCCTCCTCTTCATC
TCCCTCTGGTTCGCCTTCCTCACCGGTTTCACGGGATGGATCACGCAAGA
ATTCTCCTGGGTTGATCGCATCTGGTCGTTAACCCCTCCGTTCTACGCGT
GGCTCTTCGCCCTACACCCCTTCCTTGCCCTTGGGGAAGCCTGGCCATCT
TCGATCGGGGGCTACTTTTTTGGACGTCCTTTTCTGCTGGCGTGGCTCAC
CACCTTATGGGGCGTGAGGTTGACGTACAACTTTTGGAGGAAGGGGGGCT
ATGCGGGGGGAGGAGAGGATTATCGATGGGCTGAAGTGCGGACGTGGTTC
TCGCACTTCACGTTGCAGATGTTCAATATTTTTTTCATTGCCATATTTCA
GAACGTCCTCCTCCTCCTTCTAGTCATGCCGGCACATTCCGCCTGGGTGG
GCCGCACCTGGCAACCCCTAACCTGCGTCGACGCTTTCCTCACCATCTTA
TTCCTACTCTGCCTCGCCGCTGAAACAGTCGCCGACCAGCAGCAATGGGA
GTTCCAGCAACGCAAGCGCGCCGCCCTTGCCGCCGCTGCTCCTGCTGCTC
CTGCTGCCCCTGCTGCTCCTGCTGCTCCTGCTGCTCCCATCGCTGCGGCT
ACTGCCTCTGGCACCACCACTCCTGCAGGGAGCCCCAGTCGCAAAAACAG
AAACAGAAACAAAAACAAGAACACCAACCAGAACCACAACCACCACAACC
CCTCCTCCCCTCTCCATCGTCTCCTTCCCAAAGAAATCGCCGATGGTTTC
TGCCAGTCCGGCCTTTTTGCCCGCTGCCGCCACCCTAATTTCTCCGCTGA
GATAGCCTTATGGTGGGTCTTTCACATCTTCGTTTACCCCTCCGCGGGGA
TCCACTTCGAAAGGAAGCACGATTGGGTCAATCACACCTACTGGCCGTTT
TATATTAATTGGACGATTATCGGGCCGGTGTTGCTGACGTTGCTCTTCCA
GGGCTCGACCGATCTGACTGAGAAGCTGAGTGTGAGGAAGTATCCGAGAT
ACAGGCAGTATCAGATGAGGGTACCGCGGTTGTGGCCTCTGCTCGGGGAC
GTGGGGAAGGAGGCAGTGAAGCACGAGTAGATGGTTTGCTGGTACCACTT
CCACCCCCATCTCACGTGGCATTTGGAAGCCATCACTCATGACTTCAGCG
ACAACTTTTTCGAGACTCTCTTCCGTCCCGACCTTGTCTACCTCAAGTCT
TCAGATCCTTTCGTCTCCCTCCTCTTCATCTCCCTCTGGTTCGCCTTCCT
CACCGGTTTCACGGGATGGATCACGCAAGAATTCTCCTGGGTTGATCGCA
TCTGGTCGTTAACCCCTCCGTTCTACGCGTGGCTCTTCGCCCTACACCCC
TTCCTTGCCCTTGGGGAAGCCTGGCCATCTTCGATCGGGGGCTACTTTTT
TGGACGTCCTTTTCTGCTGGCGTGGCTCACCACCTTATGGGGCGTGAGGT
TGACGTACAACTTTTGGAGGAAGGGGGGCTATGCGGGGGGAGGAGAGGAT
TATCGATGGGCTGAAGTGCGGACGTGGTTCTCGCACTTCACGTTGCAGAT
GTTCAATATTTTTTTCATTGCCATATTTCAGAACGTCCTCCTCCTCCTTC
TAGTCATGCCGGCACATTCCGCCTGGGTGGGCCGCACCTGGCAACCCCTA
ACCTGCGTCGACGCTTTCCTCACCATCTTATTCCTACTCTGCCTCGCCGC
TGAAACAGTCGCCGACCAGCAGCAATGGGAGTTCCAGCAACGCAAGCGCG
CCGCCCTTGCCGCCGCTGCTCCTGCTGCTCCTGCTGCCCCTGCTGCTCCT
GCTGCTCCTGCTGCTCCCATCGCTGCGGCTACTGCCTCTGGCACCACCAC
TCCTGCAGGGAGCCCCAGTCGCAAAAACAGAAACAGAAACAAAAACAAGA
ACACCAACCAGAACCACAACCACCACAACCCCTCCTCCCCTCTCCATCGT
CTCCTTCCCAAAGAAATCGCCGATGGTTTCTGCCAGTCCGGCCTTTTTGC
CCGCTGCCGCCACCCTAATTTCTCCGCTGAGATAGCCTTATGGTGGGTCT
TTCACATCTTCGTTTACCCCTCCGCGGGGATCCACTTCGAAAGGAAGCAC
GATTGGGTCAATCACACCTACTGGCCGTTTTATATTAATTGGACGATTAT
CGGGCCGGTGTTGCTGACGTTGCTCTTCCAGGGCTCGACCGATCTGACTG
AGAAGCTGAGTGTGAGGAAGTATCCGAGATACAGGCAGTATCAGATGAGG
GTACCGCGGTTGTGGCCTCTGCTCGGGGACGTGGGGAAGGAGGCAGTGAA
GCACGAGTAG

Synonyms

Publications