jgi.p|Nanoce1779_2|672342, mRNA_6914 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|672342
Unique NamemRNA_6914
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1186
Alignment locationscaffold_17:413433..415883 -

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Properties
Property NameValue
TranscriptId672428
TrackFilteredModels2
ProteinId672342
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:413433..415883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672342gene_6914Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|672342mRNA_6914-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6914CDS_6914Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6914 ID=mRNA_6914|Name=jgi.p|Nanoce1779_2|672342|organism=Nannochloropsis oceanica|type=mRNA|length=1186bp
ACAGGGGTTGGTTTGCTTGCTGGGTTGTGTGCGTCGACAGCAGCTGCGTT
TCCTTACCTCTTTCGGGACGACCTTTGGGACGAGAGAGGAACGGCAAGGT
CAACACGACGAGGCCAACTAGCATTTGTGTGCAAGACCCACACCGCGCGC
CTGCCTGTGACCACGCCGATAGCTAGCTCGACGACATCCACCACTGCAAG
ATGGGCCTGCCGTGCACGACTGAGTGCTGCGCGCCATGTTGCGGATTGTT
CTCCATCATCGGCATCGTCTTCCTGATCATCTTGGGCATCATTGTTGAGA
AGCAGCCTATCTTCATTCATGGCATTACGGAGCCTCGCAATTCCTCCGTG
GCGTGCTTTGGTGGCGCCGGTATATATGCAGGCACGCTGGCTTTGTGCAT
CGCCGCCTGGATGTACGACAAGAAGAAAAAGCAACGCCGGGCTGCTAGTG
CGGGCTTGCTGAAGGACGAACAGGTGGCTTTGAATATCGAACGGCCGAGT
TCTTACGATGCCGGTACTGAGATGACGCGAGTGGCTTCCCCAGGACGAAA
GGCCTAAAGACAGGAAATAAGTGCGGGGGGAGGGCGGGACCATTATGGGA
GATGAAATAACAACAATTACCAACAACAAATTGAGGATGATGGTGATCAA
GGCAACACCCCTAGAATGGAGAAAATGAAGAGAGTCCTGCAGAGAAGGAG
GAAGAGCCACACATCAGTCGATCGTTGCCACGGCTGCTGCCGCGGTGACA
TACTGTCAGCACCAGTATCTGTAGGATCAGGAACAGTAGGGAAGAGAATG
GTAAGGAGGGAAGGACGCGAACCGTAAAAAAGAGGGGACTTCTTTTTTAT
TTATTAATTCATTTGTATCCTTGACCATGTGTGGAGGCGGTTCCGTGCTG
GGGAAGACGGTGATGAGATGGGAAGAGCGGACTTACCTTCCTGGCGTCAG
GGTCAAGGCGCCTGCCTCTGTCACTCTCGTTCGGAATTATAGAGCGACCG
ATAAATATTTTGTGAAAGAAAATAGGAAAGGGGGAAAAGAGGGAGAAAGA
TAGGGAGCAAAACAGATAGAGAGTATATGATCAGGGGAAGAGAAAAGAAG
AAGAAACCAGCACGCAAATATACCGACGCAAACCTGTCTGTCGATGAACG
AGAAGAAAGAAGAATCACGCAAGAACAGTACTCAAA
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protein sequence of jgi.p|Nanoce1779_2|672342

>mRNA_6914-protein ID=mRNA_6914-protein|Name=jgi.p|Nanoce1779_2|672342|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MGLPCTTECCAPCCGLFSIIGIVFLIILGIIVEKQPIFIHGITEPRNSSV
ACFGGAGIYAGTLALCIAAWMYDKKKKQRRAASAGLLKDEQVALNIERPS
SYDAGTEMTRVASPGRKA*
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mRNA from alignment at scaffold_17:413433..415883-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6914 ID=mRNA_6914|Name=jgi.p|Nanoce1779_2|672342|organism=Nannochloropsis oceanica|type=mRNA|length=2451bp|location=Sequence derived from alignment at scaffold_17:413433..415883- (Nannochloropsis oceanica)
ACAGGGGTTGGTTTGCTTGCTGGGTTGTGTGCGTCGACAGCAGCTGCGTT
TCCTTACCTCTTTCGGGACGACCTTTGGGACGAGAGAGGAACGGCAAGGT
CAACACGACGAGGCCAACTAGCATTTGTGTGCAAGACCCACACCGCGCGC
CTGCCTGTGACCACGCCGATAGCTAGCTCGACGACATCCACCACTGCAAG
ATGGGCCTGCCGTGCACGACTGAGTGCTGTAAGTAGTAGTGATCTGACCG
CAAGAAAAATCTCTCCGCTCCTGTCTGCCTCTGTCCCGTCCCTCATCGGT
GCAACCACCACCTGAATCCACTCCCGATTCTCTCCCACGCACACCCTGCC
ATCTTTCCCTCTCCTCTTTCTCCATAACAGGCGCGCCATGTTGCGGATTG
TTCTCCATCATCGGCATCGTCTTCCTGATCATCTTGGGCATCATTGTTGA
GAAGCAGCCTATCTTCATTCATGGCATTACGGAGCCTCGCAATTCCTCCG
TGGCGTGCTTTGGTGGCGGTACGTCAGAGAAGAGAGACGGAGGGAGTGTG
GGATCGAAGAAAGGAGAGGGTGACTGTTGAGTCGAGAGATGTGACAAGGC
TGCATGTCTATCGATATGTTGAAGATTCGTTCGTCTGGATTCCTCTCACC
CTCCTCCTCCCTCCCTCCTTCCCTCCCTCCCTCCTTCCCTCCCTCTCCCC
TTTTCTGCTTCGCCTCCACCCCTTCAGCCGGTATATATGCAGGCACGCTG
GCTTTGTGCATCGCCGCCTGGATGTACGACAAGAAGAAAAAGCAACGCCG
GGCTGCTAGTGCGGGCTTGCTGAAGGACGAACAGGTGGCTTTGAATATCG
AACGGCCGAGTTCTTACGGTGCGACCCCCCGCTAAGCTTGATTTGTGTGA
TTAATTACTTGTAGTATATGATGTATCAGACACGTAAAACACCCGTATCT
TATTCATTTGATTGCTTTAAATGTGTTGTTTGACATACAGGCGTATGAGA
GATGGTTGTGCCTTTCTTCTTCTTCATCTCTATTCCTTCCGCGGTGGTGA
TCTTGGCACATTGAGTGTATGACAAGACACATAATTTAGGATTTACAATA
CTGAGAAGCACCGCAGTGAGGATGTAGAGTGAGTAAGTGAGCCTTAGTTG
TAGCGACAGAAGCTGCTGGCGGTGGTACTGCCTCCTCCCCCACCTCTTCC
TCCTTTTCTCCTCCTCTTGCCCTCCCTCCTCCTCTTGTCCCGTGTGGTTT
TCACCACCCGATACCGCCGCTGCTGTATCGGTTTTGTCATGCGCGCACCC
CTTGTTGGGTTGGGTCATGGACCCACAAGAAGAAGTACGAGGGAGGAAGG
GAGGGAAGAGGCGAACGAGCCTGAAGGCAGACAGGACAGGAAGAATAAAG
TTGTTGTAGAGCGAGGTCTTGAACAACTAGGAAAGGGAGTCTCGGCATCT
CCACACCGCTTGCCCTTTCCTCATGGCGTGCCGGTATGGTGCTTTGTCTT
GTCTACTTCCTTTCCAATTTCCTCCCTGCCCTCCCTCCTTTCTTGGAGGA
GAGGTGCGGGATATGCTTAGCACTGATTGGGTTTTCTTCTTGTTCTTTTC
TAACGTCTAATAAGAGGAAGGACACTGGTGATTTCAAAACGTGTCTTGAG
AACAAGTGTGAGCAATAGAATGGGAAGGGGGGGAAGCTGCGGAATTGACC
TTCTTCGAGCAATCAGACTGCCCATCGAAACAACTAACATCCTTTTTCTT
CCCTTCTTCCTTCTGACCACAGATGCCGGTACTGAGATGACGCGAGTGGC
TTCCCCAGGACGAAAGGCCTAAAGACAGGAAATAAGTGCGGGGGGAGGGC
GGGACCATTATGGGAGATGAAATAACAACAATTACCAACAACAAATTGAG
GATGATGGTGATCAAGGCAACACCCCTAGAATGGAGAAAATGAAGAGAGT
CCTGCAGAGAAGGAGGAAGAGCCACACATCAGTCGATCGTTGCCACGGCT
GCTGCCGCGGTGACATACTGTCAGCACCAGTATCTGTAGGATCAGGAACA
GTAGGGAAGAGAATGGTAAGGAGGGAAGGACGCGAACCGTAAAAAAGAGG
GGACTTCTTTTTTATTTATTAATTCATTTGTATCCTTGACCATGTGTGGA
GGCGGTTCCGTGCTGGGGAAGACGGTGATGAGATGGGAAGAGCGGACTTA
CCTTCCTGGCGTCAGGGTCAAGGCGCCTGCCTCTGTCACTCTCGTTCGGA
ATTATAGAGCGACCGATAAATATTTTGTGAAAGAAAATAGGAAAGGGGGA
AAAGAGGGAGAAAGATAGGGAGCAAAACAGATAGAGAGTATATGATCAGG
GGAAGAGAAAAGAAGAAGAAACCAGCACGCAAATATACCGACGCAAACCT
GTCTGTCGATGAACGAGAAGAAAGAAGAATCACGCAAGAACAGTACTCAA
A
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Coding sequence (CDS) from alignment at scaffold_17:413433..415883-

>mRNA_6914 ID=mRNA_6914|Name=jgi.p|Nanoce1779_2|672342|organism=Nannochloropsis oceanica|type=CDS|length=1428bp|location=Sequence derived from alignment at scaffold_17:413433..415883- (Nannochloropsis oceanica)
ATGCCGGTACTGAGATGACGCGAGTGGCTTCCCCAGGACGAAAGGCCTAA
CCGGTATATATGCAGGCACGCTGGCTTTGTGCATCGCCGCCTGGATGTAC
GACAAGAAGAAAAAGCAACGCCGGGCTGCTAGTGCGGGCTTGCTGAAGGA
CGAACAGGTGGCTTTGAATATCGAACGGCCGAGTTCTTACGGCGCGCCAT
GTTGCGGATTGTTCTCCATCATCGGCATCGTCTTCCTGATCATCTTGGGC
ATCATTGTTGAGAAGCAGCCTATCTTCATTCATGGCATTACGGAGCCTCG
CAATTCCTCCGTGGCGTGCTTTGGTGGCGATGGGCCTGCCGTGCACGACT
GAGTGCTATGCCGGTACTGAGATGACGCGAGTGGCTTCCCCAGGACGAAA
GGCCTAACCGGTATATATGCAGGCACGCTGGCTTTGTGCATCGCCGCCTG
GATGTACGACAAGAAGAAAAAGCAACGCCGGGCTGCTAGTGCGGGCTTGC
TGAAGGACGAACAGGTGGCTTTGAATATCGAACGGCCGAGTTCTTACGGC
GCGCCATGTTGCGGATTGTTCTCCATCATCGGCATCGTCTTCCTGATCAT
CTTGGGCATCATTGTTGAGAAGCAGCCTATCTTCATTCATGGCATTACGG
AGCCTCGCAATTCCTCCGTGGCGTGCTTTGGTGGCGATGGGCCTGCCGTG
CACGACTGAGTGCTATGCCGGTACTGAGATGACGCGAGTGGCTTCCCCAG
GACGAAAGGCCTAACCGGTATATATGCAGGCACGCTGGCTTTGTGCATCG
CCGCCTGGATGTACGACAAGAAGAAAAAGCAACGCCGGGCTGCTAGTGCG
GGCTTGCTGAAGGACGAACAGGTGGCTTTGAATATCGAACGGCCGAGTTC
TTACGGCGCGCCATGTTGCGGATTGTTCTCCATCATCGGCATCGTCTTCC
TGATCATCTTGGGCATCATTGTTGAGAAGCAGCCTATCTTCATTCATGGC
ATTACGGAGCCTCGCAATTCCTCCGTGGCGTGCTTTGGTGGCGATGGGCC
TGCCGTGCACGACTGAGTGCTATGCCGGTACTGAGATGACGCGAGTGGCT
TCCCCAGGACGAAAGGCCTAACCGGTATATATGCAGGCACGCTGGCTTTG
TGCATCGCCGCCTGGATGTACGACAAGAAGAAAAAGCAACGCCGGGCTGC
TAGTGCGGGCTTGCTGAAGGACGAACAGGTGGCTTTGAATATCGAACGGC
CGAGTTCTTACGGCGCGCCATGTTGCGGATTGTTCTCCATCATCGGCATC
GTCTTCCTGATCATCTTGGGCATCATTGTTGAGAAGCAGCCTATCTTCAT
TCATGGCATTACGGAGCCTCGCAATTCCTCCGTGGCGTGCTTTGGTGGCG
ATGGGCCTGCCGTGCACGACTGAGTGCT
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Synonyms
Publications