Properties
| Property Name | Value |
|---|
| TranscriptId | 626019 |
| Track | FilteredModels2 |
| ProteinId | 625933 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_17 | supercontig | scaffold_17:410421..413423 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6913 ID=mRNA_6913|Name=jgi.p|Nanoce1779_2|625933|organism=Nannochloropsis oceanica|type=mRNA|length=2783bp
ATGGTCATGGTTTCCCTTACCTGTGTTTGGATAGCATGGGACAGTGATGT
GTCGAAGCTTCACGTTATCATTGATTTTCCTCCAGATTGGGTTTATTTTT
ACTTGATGTCTTGACTGAAAATCGCCCACCGTCTCCCTTTCTTTTCCGTG
CCTCTTATCATGGACTTGGTCCTCTCTCATCACGCTGCCACAAGCAGCGG
TAGCACGAAGGTGAAGACAACGATTATGTGTACCTGATCTTGCGGGATCT
ATGCGGTTAAGTATGCTTTTCTTAACGCACTTTTTGGTGCCGCCGCACGC
CGCACCGCCCCGCCGCGCAGACATTTGTTCTACCGGGCGGCGGCGTCGTA
CACAAGGAGCTGGTTTGGCTGCAAACGCACGCAGACTTAGCATCATAATG
CTATTCATGACACGATATTCATGCAGGAGACACGCTGTGAGCGGAAAGAG
CCCATGGATGGACTCTCTCAAACTAACGCGTCCCATCAAAATACTCATCA
CTTTTCGCCTCCCCTCCATTCCTCCCTTCCCACTCCCAAGAAGCACATAG
CGACACGCACCTTGTCTAATCATAGCATCAGCACCTCCACAACTTTATCC
CTTACATCAAAACCATGGCAGCTTCTGCGGGTCAGATGCTCCTGGACGGA
GAACGCACGTCGGGGCAGGACGTCCGCACCGCCAACGTGACCGCCTCCAT
GGCCATCGCCAACATCGTTAAGTCTTCCCTTGGGCCCGTCGGCCTTGACA
AGATGCTTGTAGATGACATCGGTGATGTCACCATTACGAATGATGGAGCG
ACGATCCTGCAGCAGTTGGAAGTGGAGCATCCTGCTGCCAAAGTGTTGGT
CGAGCTAGCGCACCTCCAAGACCAGGAAGTAGGGGATGGGACGACGTCTG
TCGTTATCGTCGCTGCGGAGCTCTTGAAGAGGGGGAATGAGCTGGTGATG
AATAAGGTGCATCCTACCAGCATTATGAGTGGATATCGGCTGGCGCTGAA
GGAGGCGGTGAAGTTTATCAAGGAGAAGCTTGTGGTGCCAGTGGACCAGC
TGCAACAAGATAACCTGCTCAATGCCGCCCGCACCTCCATGAGCAGCAAA
ATCCTGGGGCCCGAATCCGACTTTTTTGCTCAATTGGCTGTCGATGCTGT
TCAGTCCGTGAAGACCGAAAGTACCCACAGCGAGACAGGGAAAATAGGCG
TCAAATACCCTGTTTCGGCCATCCACATTCTTAAATGCCATGGCCAGTCC
TCGCTCTCCTCCCACCTCGTCGATGGCTTTGCGATTGCCGGGGGCCGTGC
GGCCCAGGGGATGCCCACGTCTGTAACGCCCGCGAAAATTGCCTTGCTTG
ACTTCAGCTTACAACGGCACAAGATGCAGCTGGGGGTGAGTGTGGTGGTC
AAGGACGTGAAGGAGGTCGAGTTGATCCGGCAGAGGGAAATGGATATTAC
AAAGGAGCGGATCCAGAAGATCTTGGAGGCGGGTGCAAACGTCGTGCTGA
CGACGAAGGGAATCGACGACCTGGCCATGAAGTATTTTGTGGAGGCCGGG
GCCATGGCGGTGCGGAGGGTGAAGAAAGAAGACTTGAAACGAATTGCCAA
GGCAACGGGGGGGCAGGTGGTGGGCACCTTAGCGGATATGGAGGGGAATG
AAGCGTTTGATCCGGGTATGCTGGGGGTGGCGGATATGGTGGAGGAACGA
AGGGTGGGGGATGGGGAGATGCTTTACATCAGGTTGAAGGAGGGAGGGAA
AGGGGTGGGGAGGGCGGCGACAATCGTGTTGCGGGGAGCGAATGATTACA
TGCTCGATGAAATGGACAGGGCGTTGCACGATAGCCTGATGGTGGTCAAA
CGGATGCTTGAGAGCAATTCCTTGGTCGCGGGGGGCGGGGCCGTGGAGGC
AGCCTTGTCCATCCACTTGGAGGAATATGCCATGACGTTGGGAAGCAAAG
AGCAATTAGCCATTGCCGCATTTTCGGAGGCCTTGCTGGTCATCCCTCGG
ACTCTGGCTGTGAACGCGGCGCAGGATGCCACCGAACTAGTTGCCAACCT
GCGGGCGGCCCATTTCAAGGCCCAGCAGCAGGAGTCGACGTCGACTGGAC
AGCAGGCCCCTGGGGGCATGGAACCGATGGGAGGGGGGGCGGCGTTGGGA
GAGGAAGGGGATGGGGGAGGGAAGGCGAAGAAGAATGGACAGAAGGATGA
TTTGTGGTATGCAGGCTTGGATTTATTTGAGGGTGTGGTGAGGAATAATC
TTGCGGCGGGGGTCGTGGAGCCGGCGATCAGTAAGATTAAGAGTTTGAGG
TTTGCCACGGAGGCGGCGATTACGATTTTGAGGATTGATGACTTGATCAA
GCTGACAGAAAGGAGCCCAGGGCCGCCGGGGGGGATGCAGGGGATGCAGT
AATCCAATGGGGTTGAAAGAGTGAAGATTTCGATGTCTATTATTTCCTCC
ATTTTCCTGTCTTCCTGGTTCGCGGAGAAGGGGGAGCAGGAGTAGGAAGA
GGAGGGCATGGGCATTGAATAATTTGTTTGAGTATGGGGAGGACCGAACA
AGAAATCGGTATTTCTGTGTAGTGACGGGATGGGTTGCAGCGAGAGAAAG
GCAGAAGGCAGGAGGAGAATTAGAATATAGCCGACGATGACCGTTCATTC
GTTAATCAATGAGGAAGTCGATAGCGAGAAAGAAAAAGACAAACCAAAGA
AAGTTGAGTGAAAAGGATATGGTAATAACAACACAACAAATAAAATGGAG
AAACCAAAAAAGGAGGATAAAAAACGACGACCA back to topprotein sequence of jgi.p|Nanoce1779_2|625933 >mRNA_6913-protein ID=mRNA_6913-protein|Name=jgi.p|Nanoce1779_2|625933|organism=Nannochloropsis oceanica|type=polypeptide|length=596bp
MAASAGQMLLDGERTSGQDVRTANVTASMAIANIVKSSLGPVGLDKMLVD
DIGDVTITNDGATILQQLEVEHPAAKVLVELAHLQDQEVGDGTTSVVIVA
AELLKRGNELVMNKVHPTSIMSGYRLALKEAVKFIKEKLVVPVDQLQQDN
LLNAARTSMSSKILGPESDFFAQLAVDAVQSVKTESTHSETGKIGVKYPV
SAIHILKCHGQSSLSSHLVDGFAIAGGRAAQGMPTSVTPAKIALLDFSLQ
RHKMQLGVSVVVKDVKEVELIRQREMDITKERIQKILEAGANVVLTTKGI
DDLAMKYFVEAGAMAVRRVKKEDLKRIAKATGGQVVGTLADMEGNEAFDP
GMLGVADMVEERRVGDGEMLYIRLKEGGKGVGRAATIVLRGANDYMLDEM
DRALHDSLMVVKRMLESNSLVAGGGAVEAALSIHLEEYAMTLGSKEQLAI
AAFSEALLVIPRTLAVNAAQDATELVANLRAAHFKAQQQESTSTGQQAPG
GMEPMGGGAALGEEGDGGGKAKKNGQKDDLWYAGLDLFEGVVRNNLAAGV
VEPAISKIKSLRFATEAAITILRIDDLIKLTERSPGPPGGMQGMQ* back to topmRNA from alignment at scaffold_17:410421..413423+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6913 ID=mRNA_6913|Name=jgi.p|Nanoce1779_2|625933|organism=Nannochloropsis oceanica|type=mRNA|length=3003bp|location=Sequence derived from alignment at scaffold_17:410421..413423+ (Nannochloropsis oceanica)
ATGGTCATGGTTTCCCTTACCTGTGTTTGGATAGCATGGGACAGTGATGT
GTCGAAGCTTCACGTTATCATTGATTTTCCTCCAGATTGGGTTTATTTTT
ACTTGATGTCTTGACTGAAAATCGCCCACCGTCTCCCTTTCTTTTCCGTG
CCTCTTATCATGGACTTGGTCCTCTCTCATCACGCTGCCACAAGCAGCGG
TAGCACGAAGGTGAAGACAACGATTATGTGTACCTGATCTTGCGGGATCT
ATGCGGTTAAGTATGCTTTTCTTAACGCACTTTTTGGTGCCGCCGCACGC
CGCACCGCCCCGCCGCGCAGACATTTGTTCTACCGGGCGGCGGCGTCGTA
CACAAGGAGCTGGTTTGGCTGCAAACGCACGCAGACTTAGCATCATAATG
CTATTCATGACACGATATTCATGCAGGAGACACGCTGTGAGCGGAAAGAG
CCCATGGATGGACTCTCTCAAACTAACGCGTCCCATCAAAATACTCATCA
CTTTTCGCCTCCCCTCCATTCCTCCCTTCCCACTCCCAAGAAGCACATAG
CGACACGCACCTTGTCTAATCATAGCATCAGCACCTCCACAACTTTATCC
CTTACATCAAAACCATGGCAGCTTCTGCGGGTCAGATGCTCCTGGACGGA
GAACGCACGTCGGGGCAGGACGTCCGCACCGCCAACGTGACCGCCTCCAT
GGCCATCGCCAACATCGTTAAGTCTTCCCTTGGGCCCGTCGGCCTTGACA
AGATGCTTGTAGATGACATCGGTGATGTCACCATTACGAATGATGGAGCG
ACGATCCTGCAGCAGTTGGAAGTGGAGCATCCTGCTGCCAAAGTGTTGGT
CGAGCTAGCGCACCTCCAAGACCAGGAAGTAGGGGATGGGACGACGTCTG
TCGTTATCGTCGCTGCGGAGCTCTTGAAGAGGGGGAATGAGCTGGTGATG
AATAAGGTGCATCCTACCAGCATTATGAGTGGATATCGGCTGGCGCTGAA
GGAGGCGGTGAAGTTTATCAAGGAGAAGCTTGTGGTGCCAGTGGACCAGG
TTAGGACTTAGGGAGGGTGGGCAGACGAGGGGGAGGGAGGAGGAAAGGTC
GTAGAGAGGCCTCCTTTCCATTTGTATATTCCTTTCTTCAATCCGTTTTT
AGCATTAATTTTTTTCGACTCAGTTTCAAAAAAACTTCTCGCCCTTATGT
GATGACACTAATCTGACCTTCCCTCTCTCCCTCCCTTCCCCCCTTCCCTC
CTCGCCCTCCCTTTTACAGCTGCAACAAGATAACCTGCTCAATGCCGCCC
GCACCTCCATGAGCAGCAAAATCCTGGGGCCCGAATCCGACTTTTTTGCT
CAATTGGCTGTCGATGCTGTTCAGTCCGTGAAGACCGAAAGTACCCACAG
CGAGACAGGGAAAATAGGCGTCAAATACCCTGTTTCGGCCATCCACATTC
TTAAATGCCATGGCCAGTCCTCGCTCTCCTCCCACCTCGTCGATGGCTTT
GCGATTGCCGGGGGCCGTGCGGCCCAGGGGATGCCCACGTCTGTAACGCC
CGCGAAAATTGCCTTGCTTGACTTCAGCTTACAACGGCACAAGATGCAGC
TGGGGGTGAGTGTGGTGGTCAAGGACGTGAAGGAGGTCGAGTTGATCCGG
CAGAGGGAAATGGATATTACAAAGGAGCGGATCCAGAAGATCTTGGAGGC
GGGTGCAAACGTCGTGCTGACGACGAAGGGAATCGACGACCTGGCCATGA
AGTATTTTGTGGAGGCCGGGGCCATGGCGGTGCGGAGGGTGAAGAAAGAA
GACTTGAAACGAATTGCCAAGGCAACGGGGGGGCAGGTGGTGGGCACCTT
AGCGGATATGGAGGGGAATGAAGCGTTTGATCCGGGTATGCTGGGGGTGG
CGGATATGGTGGAGGAACGAAGGGTGGGGGATGGGGAGATGCTTTACATC
AGGTTGAAGGAGGGAGGGAAAGGGGTGGGGAGGGCGGCGACAATCGTGTT
GCGGGGAGCGAATGATTACATGCTCGATGAAATGGACAGGGCGTTGCACG
ATAGCCTGATGGTGGTCAAACGGATGCTTGAGAGCAATTCCTTGGTCGCG
GGGGGCGGGGCCGTGGAGGCAGCCTTGTCCATCCACTTGGAGGAATATGC
CATGACGTTGGGAAGCAAAGAGCAATTAGCCATTGCCGCATTTTCGGAGG
CCTTGCTGGTCATCCCTCGGACTCTGGCTGTGAACGCGGCGCAGGATGCC
ACCGAACTAGTTGCCAACCTGCGGGCGGCCCATTTCAAGGCCCAGCAGCA
GGAGTCGACGTCGACTGGACAGCAGGCCCCTGGGGGCATGGAACCGATGG
GAGGGGGGGCGGCGTTGGGAGAGGAAGGGGATGGGGGAGGGAAGGCGAAG
AAGAATGGACAGAAGGATGATTTGTGGTATGCAGGCTTGGATTTATTTGA
GGGTGTGGTGAGGAATAATCTTGCGGCGGGGGTCGTGGAGCCGGCGATCA
GTAAGATTAAGAGTTTGAGGTTTGCCACGGAGGCGGCGATTACGATTTTG
AGGATTGATGACTTGATCAAGCTGACAGAAAGGAGCCCAGGGCCGCCGGG
GGGGATGCAGGGGATGCAGTAATCCAATGGGGTTGAAAGAGTGAAGATTT
CGATGTCTATTATTTCCTCCATTTTCCTGTCTTCCTGGTTCGCGGAGAAG
GGGGAGCAGGAGTAGGAAGAGGAGGGCATGGGCATTGAATAATTTGTTTG
AGTATGGGGAGGACCGAACAAGAAATCGGTATTTCTGTGTAGTGACGGGA
TGGGTTGCAGCGAGAGAAAGGCAGAAGGCAGGAGGAGAATTAGAATATAG
CCGACGATGACCGTTCATTCGTTAATCAATGAGGAAGTCGATAGCGAGAA
AGAAAAAGACAAACCAAAGAAAGTTGAGTGAAAAGGATATGGTAATAACA
ACACAACAAATAAAATGGAGAAACCAAAAAAGGAGGATAAAAAACGACGA
CCA back to topCoding sequence (CDS) from alignment at scaffold_17:410421..413423+ >mRNA_6913 ID=mRNA_6913|Name=jgi.p|Nanoce1779_2|625933|organism=Nannochloropsis oceanica|type=CDS|length=3576bp|location=Sequence derived from alignment at scaffold_17:410421..413423+ (Nannochloropsis oceanica)
ATGGCAGCTTCTGCGGGTCAGATGCTCCTGGACGGAGAACGCACGTCGGG
GCAGGACGTCCGCACCGCCAACGTGACCGCCTCCATGGCCATCGCCAACA
TCGTTAAGTCTTCCCTTGGGCCCGTCGGCCTTGACAAGATGCTTGTAGAT
GACATCGGTGATGTCACCATTACGAATGATGGAGCGACGATCCTGCAGCA
GTTGGAAGTGGAGCATCCTGCTGCCAAAGTGTTGGTCGAGCTAGCGCACC
TCCAAGACCAGGAAGTAGGGGATGGGACGACGTCTGTCGTTATCGTCGCT
GCGGAGCTCTTGAAGAGGGGGAATGAGCTGGTGATGAATAAGGTGCATCC
TACCAGCATTATGAGTGGATATCGGCTGGCGCTGAAGGAGGCGGTGAAGT
TTATCAAGGAGAAGCTTGTGGTGCCAGTGGACCAGCTGCAACAAGATAAC
CTGCTCAATGCCGCCCGCACCTCCATGAGCAGCAAAATCCTGGGGCCCGA
ATCCGACTTTTTTGCTCAATTGGCTGTCGATGCTGTTCAGTCCGTGAAGA
CCGAAAGTACCCACAGCGAGACAGGGAAAATAGGCGTCAAATACCCTGTT
TCGGCCATCCACATTCTTAAATGCCATGGCCAGTCCTCGCTCTCCTCCCA
CCTCGTCGATGGCTTTGCGATTGCCGGGGGCCGTGCGGCCCAGGGGATGC
CCACGTCTGTAACGCCCGCGAAAATTGCCTTGCTTGACTTCAGCTTACAA
CGGCACAAGATGCAGCTGGGGGTGAGTGTGGTGGTCAAGGACGTGAAGGA
GGTCGAGTTGATCCGGCAGAGGGAAATGGATATTACAAAGGAGCGGATCC
AGAAGATCTTGGAGGCGGGTGCAAACGTCGTGCTGACGACGAAGGGAATC
GACGACCTGGCCATGAAGTATTTTGTGGAGGCCGGGGCCATGGCGGTGCG
GAGGGTGAAGAAAGAAGACTTGAAACGAATTGCCAAGGCAACGGGGGGGC
AGGTGGTGGGCACCTTAGCGGATATGGAGGGGAATGAAGCGTTTGATCCG
GGTATGCTGGGGGTGGCGGATATGGTGGAGGAACGAAGGGTGGGGGATGG
GGAGATGCTTTACATCAGGTTGAAGGAGGGAGGGAAAGGGGTGGGGAGGG
CGGCGACAATCGTGTTGCGGGGAGCGAATGATTACATGCTCGATGAAATG
GACAGGGCGTTGCACGATAGCCTGATGGTGGTCAAACGGATGCTTGAGAG
CAATTCCTTGGTCGCGGGGGGCGGGGCCGTGGAGGCAGCCTTGTCCATCC
ACTTGGAGGAATATGCCATGACGTTGGGAAGCAAAGAGCAATTAGCCATT
GCCGCATTTTCGGAGGCCTTGCTGGTCATCCCTCGGACTCTGGCTGTGAA
CGCGGCGCAGGATGCCACCGAACTAGTTGCCAACCTGCGGGCGGCCCATT
TCAAGGCCCAGCAGCAGGAGTCGACGTCGACTGGACAGCAGGCCCCTGGG
GGCATGGAACCGATGGGAGGGGGGGCGGCGTTGGGAGAGGAAGGGGATGG
GGGAGGGAAGGCGAAGAAGAATGGACAGAAGGATGATTTGTGGTATGCAG
GCTTGGATTTATTTGAGGGTGTGGTGAGGAATAATCTTGCGGCGGGGGTC
GTGGAGCCGGCGATCAGTAAGATTAAGAGTTTGAGGTTTGCCACGGAGGC
GGCGATTACGATTTTGAGGATTGATGACTTGATCAAGCTGACAGAAAGGA
GCCCAGGGCCGCCGGGGGGGATGCAGGGGATGCAGTAAATGGCAGCTTCT
GCGGGTCAGATGCTCCTGGACGGAGAACGCACGTCGGGGCAGGACGTCCG
CACCGCCAACGTGACCGCCTCCATGGCCATCGCCAACATCGTTAAGTCTT
CCCTTGGGCCCGTCGGCCTTGACAAGATGCTTGTAGATGACATCGGTGAT
GTCACCATTACGAATGATGGAGCGACGATCCTGCAGCAGTTGGAAGTGGA
GCATCCTGCTGCCAAAGTGTTGGTCGAGCTAGCGCACCTCCAAGACCAGG
AAGTAGGGGATGGGACGACGTCTGTCGTTATCGTCGCTGCGGAGCTCTTG
AAGAGGGGGAATGAGCTGGTGATGAATAAGGTGCATCCTACCAGCATTAT
GAGTGGATATCGGCTGGCGCTGAAGGAGGCGGTGAAGTTTATCAAGGAGA
AGCTTGTGGTGCCAGTGGACCAGCTGCAACAAGATAACCTGCTCAATGCC
GCCCGCACCTCCATGAGCAGCAAAATCCTGGGGCCCGAATCCGACTTTTT
TGCTCAATTGGCTGTCGATGCTGTTCAGTCCGTGAAGACCGAAAGTACCC
ACAGCGAGACAGGGAAAATAGGCGTCAAATACCCTGTTTCGGCCATCCAC
ATTCTTAAATGCCATGGCCAGTCCTCGCTCTCCTCCCACCTCGTCGATGG
CTTTGCGATTGCCGGGGGCCGTGCGGCCCAGGGGATGCCCACGTCTGTAA
CGCCCGCGAAAATTGCCTTGCTTGACTTCAGCTTACAACGGCACAAGATG
CAGCTGGGGGTGAGTGTGGTGGTCAAGGACGTGAAGGAGGTCGAGTTGAT
CCGGCAGAGGGAAATGGATATTACAAAGGAGCGGATCCAGAAGATCTTGG
AGGCGGGTGCAAACGTCGTGCTGACGACGAAGGGAATCGACGACCTGGCC
ATGAAGTATTTTGTGGAGGCCGGGGCCATGGCGGTGCGGAGGGTGAAGAA
AGAAGACTTGAAACGAATTGCCAAGGCAACGGGGGGGCAGGTGGTGGGCA
CCTTAGCGGATATGGAGGGGAATGAAGCGTTTGATCCGGGTATGCTGGGG
GTGGCGGATATGGTGGAGGAACGAAGGGTGGGGGATGGGGAGATGCTTTA
CATCAGGTTGAAGGAGGGAGGGAAAGGGGTGGGGAGGGCGGCGACAATCG
TGTTGCGGGGAGCGAATGATTACATGCTCGATGAAATGGACAGGGCGTTG
CACGATAGCCTGATGGTGGTCAAACGGATGCTTGAGAGCAATTCCTTGGT
CGCGGGGGGCGGGGCCGTGGAGGCAGCCTTGTCCATCCACTTGGAGGAAT
ATGCCATGACGTTGGGAAGCAAAGAGCAATTAGCCATTGCCGCATTTTCG
GAGGCCTTGCTGGTCATCCCTCGGACTCTGGCTGTGAACGCGGCGCAGGA
TGCCACCGAACTAGTTGCCAACCTGCGGGCGGCCCATTTCAAGGCCCAGC
AGCAGGAGTCGACGTCGACTGGACAGCAGGCCCCTGGGGGCATGGAACCG
ATGGGAGGGGGGGCGGCGTTGGGAGAGGAAGGGGATGGGGGAGGGAAGGC
GAAGAAGAATGGACAGAAGGATGATTTGTGGTATGCAGGCTTGGATTTAT
TTGAGGGTGTGGTGAGGAATAATCTTGCGGCGGGGGTCGTGGAGCCGGCG
ATCAGTAAGATTAAGAGTTTGAGGTTTGCCACGGAGGCGGCGATTACGAT
TTTGAGGATTGATGACTTGATCAAGCTGACAGAAAGGAGCCCAGGGCCGC
CGGGGGGGATGCAGGGGATGCAGTAA back to top
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