jgi.p|Nanoce1779_2|596756, mRNA_6912 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596756
Unique NamemRNA_6912
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length605
Alignment locationscaffold_17:410421..411025 +

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Properties
Property NameValue
TranscriptId596842
TrackFilteredModels2
ProteinId596756
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:410421..411025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596756gene_6912Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596756mRNA_6912-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6912CDS_6912Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6912 ID=mRNA_6912|Name=jgi.p|Nanoce1779_2|596756|organism=Nannochloropsis oceanica|type=mRNA|length=605bp
ATGGTCATGGTTTCCCTTACCTGTGTTTGGATAGCATGGGACAGTGATGT
GTCGAAGCTTCACGTTATCATTGATTTTCCTCCAGATTGGGTTTATTTTT
ACTTGATGTCTTGACTGAAAATCGCCCACCGTCTCCCTTTCTTTTCCGTG
CCTCTTATCATGGACTTGGTCCTCTCTCATCACGCTGCCACAAGCAGCGG
TAGCACGAAGGTGAAGACAACGATTATGTGTACCTGATCTTGCGGGATCT
ATGCGGTTAAGTATGCTTTTCTTAACGCACTTTTTGGTGCCGCCGCACGC
CGCACCGCCCCGCCGCGCAGACATTTGTTCTACCGGGCGGCGGCGTCGTA
CACAAGGAGCTGGTTTGGCTGCAAACGCACGCAGACTTAGCATCATAATG
CTATTCATGACACGATATTCATGCAGGAGACACGCTGTGAGCGGAAAGAG
CCCATGGATGGACTCTCTCAAACTAACGCGTCCCATCAAAATACTCATCA
CTTTTCGCCTCCCCTCCATTCCTCCCTTCCCACTCCCAAGAAGCACATAG
CGACACGCACCTTGTCTAATCATAGCATCAGCACCTCCACAACTTTATCC
CTTAC
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protein sequence of jgi.p|Nanoce1779_2|596756

>mRNA_6912-protein ID=mRNA_6912-protein|Name=jgi.p|Nanoce1779_2|596756|organism=Nannochloropsis oceanica|type=polypeptide|length=100bp
MRLSMLFLTHFLVPPHAAPPRRADICSTGRRRRTQGAGLAANARRLSIIM
LFMTRYSCRRHAVSGKSPWMDSLKLTRPIKILITFRLPSIPPFPLPRST*
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mRNA from alignment at scaffold_17:410421..411025+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6912 ID=mRNA_6912|Name=jgi.p|Nanoce1779_2|596756|organism=Nannochloropsis oceanica|type=mRNA|length=605bp|location=Sequence derived from alignment at scaffold_17:410421..411025+ (Nannochloropsis oceanica)
ATGGTCATGGTTTCCCTTACCTGTGTTTGGATAGCATGGGACAGTGATGT
GTCGAAGCTTCACGTTATCATTGATTTTCCTCCAGATTGGGTTTATTTTT
ACTTGATGTCTTGACTGAAAATCGCCCACCGTCTCCCTTTCTTTTCCGTG
CCTCTTATCATGGACTTGGTCCTCTCTCATCACGCTGCCACAAGCAGCGG
TAGCACGAAGGTGAAGACAACGATTATGTGTACCTGATCTTGCGGGATCT
ATGCGGTTAAGTATGCTTTTCTTAACGCACTTTTTGGTGCCGCCGCACGC
CGCACCGCCCCGCCGCGCAGACATTTGTTCTACCGGGCGGCGGCGTCGTA
CACAAGGAGCTGGTTTGGCTGCAAACGCACGCAGACTTAGCATCATAATG
CTATTCATGACACGATATTCATGCAGGAGACACGCTGTGAGCGGAAAGAG
CCCATGGATGGACTCTCTCAAACTAACGCGTCCCATCAAAATACTCATCA
CTTTTCGCCTCCCCTCCATTCCTCCCTTCCCACTCCCAAGAAGCACATAG
CGACACGCACCTTGTCTAATCATAGCATCAGCACCTCCACAACTTTATCC
CTTAC
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Coding sequence (CDS) from alignment at scaffold_17:410421..411025+

>mRNA_6912 ID=mRNA_6912|Name=jgi.p|Nanoce1779_2|596756|organism=Nannochloropsis oceanica|type=CDS|length=300bp|location=Sequence derived from alignment at scaffold_17:410421..411025+ (Nannochloropsis oceanica)
ATGCGGTTAAGTATGCTTTTCTTAACGCACTTTTTGGTGCCGCCGCACGC
CGCACCGCCCCGCCGCGCAGACATTTGTTCTACCGGGCGGCGGCGTCGTA
CACAAGGAGCTGGTTTGGCTGCAAACGCACGCAGACTTAGCATCATAATG
CTATTCATGACACGATATTCATGCAGGAGACACGCTGTGAGCGGAAAGAG
CCCATGGATGGACTCTCTCAAACTAACGCGTCCCATCAAAATACTCATCA
CTTTTCGCCTCCCCTCCATTCCTCCCTTCCCACTCCCAAGAAGCACATAG
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Synonyms
Publications