jgi.p|Nanoce1779_2|116483, mRNA_6907 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|116483
Unique NamemRNA_6907
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length624
Alignment locationscaffold_17:401726..402349 -

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Properties
Property NameValue
TranscriptId116569
TrackFilteredModels2
ProteinId116483
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:401726..402349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|116483gene_6907Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|116483mRNA_6907-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6907CDS_6907Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6907 ID=mRNA_6907|Name=jgi.p|Nanoce1779_2|116483|organism=Nannochloropsis oceanica|type=mRNA|length=624bp
AAAGGAGAACCATTGAATGTACAGCGCCAACGACACATACGGAGACGGAG
GGGCAAACAGATTGATCTGTGCTTCCTTCGCCTCCTTCCAAATTACTATA
TACATCTGAGGTGGCAAGCAACCTACATACACTAAGGCAGTTAAAAATGG
TAAAAAACTATCGAGTTAAAAAAGTACAGGGTTATGTCCCTCCCTCTCTC
CCTCTTTCTCTCTCTCTCTTTCGCGCGCCCCCGGTCATCCTCCTCTCCAT
TCAGCTTGCTGTTACTGCTGCTGCTGCTGCCAGTCATCTTTTCAGTTCAT
TTCCAAAAGGCATGATAAAATCCAAGGACTTTGTGTTATTCCCTTTCGTC
ACTGATCTCCCTCTCCCTTACTTCCTTATCTCTCTCTTGCTCTGTTGGTA
CTCTTATGAGGGGCCTCACGCATTTTTCCATTTTAGACGACAACCAGCCA
TAAGCATCTGCAGAAAAGGATTCAAGATCAAGCATGAGAGGTGAGGTGAC
CGCCCGGCCTCCTCCTACAGCTGCTGTCGCAGATGCTGCTACTGCTGGTA
CAAACTCGACTCCCTTCAATCTGGGGCGTCACAAACGACGCATCTGTACA
AAACTTTTAACTACAAAAATGACA
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protein sequence of jgi.p|Nanoce1779_2|116483

>mRNA_6907-protein ID=mRNA_6907-protein|Name=jgi.p|Nanoce1779_2|116483|organism=Nannochloropsis oceanica|type=polypeptide|length=116bp
MVKNYRVKKVQGYVPPSLPLSLSLFRAPPVILLSIQLAVTAAAAASHLFS
SFPKGMIKSKDFVLFPFVTDLPLPYFLISLLLCWYSYEGPHAFFHFRRQP
AISICRKGFKIKHER*
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mRNA from alignment at scaffold_17:401726..402349-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6907 ID=mRNA_6907|Name=jgi.p|Nanoce1779_2|116483|organism=Nannochloropsis oceanica|type=mRNA|length=624bp|location=Sequence derived from alignment at scaffold_17:401726..402349- (Nannochloropsis oceanica)
AAAGGAGAACCATTGAATGTACAGCGCCAACGACACATACGGAGACGGAG
GGGCAAACAGATTGATCTGTGCTTCCTTCGCCTCCTTCCAAATTACTATA
TACATCTGAGGTGGCAAGCAACCTACATACACTAAGGCAGTTAAAAATGG
TAAAAAACTATCGAGTTAAAAAAGTACAGGGTTATGTCCCTCCCTCTCTC
CCTCTTTCTCTCTCTCTCTTTCGCGCGCCCCCGGTCATCCTCCTCTCCAT
TCAGCTTGCTGTTACTGCTGCTGCTGCTGCCAGTCATCTTTTCAGTTCAT
TTCCAAAAGGCATGATAAAATCCAAGGACTTTGTGTTATTCCCTTTCGTC
ACTGATCTCCCTCTCCCTTACTTCCTTATCTCTCTCTTGCTCTGTTGGTA
CTCTTATGAGGGGCCTCACGCATTTTTCCATTTTAGACGACAACCAGCCA
TAAGCATCTGCAGAAAAGGATTCAAGATCAAGCATGAGAGGTGAGGTGAC
CGCCCGGCCTCCTCCTACAGCTGCTGTCGCAGATGCTGCTACTGCTGGTA
CAAACTCGACTCCCTTCAATCTGGGGCGTCACAAACGACGCATCTGTACA
AAACTTTTAACTACAAAAATGACA
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Coding sequence (CDS) from alignment at scaffold_17:401726..402349-

>mRNA_6907 ID=mRNA_6907|Name=jgi.p|Nanoce1779_2|116483|organism=Nannochloropsis oceanica|type=CDS|length=348bp|location=Sequence derived from alignment at scaffold_17:401726..402349- (Nannochloropsis oceanica)
ATGGTAAAAAACTATCGAGTTAAAAAAGTACAGGGTTATGTCCCTCCCTC
TCTCCCTCTTTCTCTCTCTCTCTTTCGCGCGCCCCCGGTCATCCTCCTCT
CCATTCAGCTTGCTGTTACTGCTGCTGCTGCTGCCAGTCATCTTTTCAGT
TCATTTCCAAAAGGCATGATAAAATCCAAGGACTTTGTGTTATTCCCTTT
CGTCACTGATCTCCCTCTCCCTTACTTCCTTATCTCTCTCTTGCTCTGTT
GGTACTCTTATGAGGGGCCTCACGCATTTTTCCATTTTAGACGACAACCA
GCCATAAGCATCTGCAGAAAAGGATTCAAGATCAAGCATGAGAGGTGA
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Synonyms
Publications