jgi.p|Nanoce1779_2|596731, mRNA_6904 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|596731
Unique Name	mRNA_6904
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1864
Alignment location	scaffold_17:392606..394469 -

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Properties


Property Name	Value
TranscriptId	596817
Track	FilteredModels2
ProteinId	596731

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:392606..394469 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596731	gene_6904	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596731	mRNA_6904-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6904	CDS_6904	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:392606..394469-
coding sequence from alignment at scaffold_17:392606..394469-

mRNA sequence

>mRNA_6904 ID=mRNA_6904|Name=jgi.p|Nanoce1779_2|596731|organism=Nannochloropsis oceanica|type=mRNA|length=1864bp
AGAGAAAATGGACACAAGTCGACAAAGAAGACCATGGCATAGAAGCACCG
TCCATCTGACTGTGCTCGCGGTGGCAGCCACACTCCTCCCCACCCAGACC
ACTGCTGCCGGCCCATCACCACCCTCCTTCGCAAAACACCTCTCCACACG
ACTCCGCCAACAATCATCAACCCCACCATTGCCCACTTACACCGTCACAT
TGGCCCCATGCACACCTTTGCCTGTCCTGAGCAATTGCAGTGCGGTGCCT
CAGACCTTCCATGATAACGTCGAGGCCTGCGCCCACATTTCATTTTCCGC
CTTCGGCCAGAAAGCCACGATGGCGCACCTCAGTTTTGTGTTGGTGGAAG
AGGAGGGTGAACATGGACTTGCTGCATTGCCTGAATTACAAGTCGTGCAT
GAGGATGGTGGGAAGAAGCGGACAGAGGGGCAGAGTAGTGGTGACAGCGG
CGACCACAACGGCAAGAGGAGGACGTTGGAGGGTGTATCTTTAATCCGTT
CCGGCTCCCAGAAGGGGGAAGTCCCAGACGTAAAGGGCATCGAGAGCGAT
ACAAATGAAAGCAATTATGTTGACCTCGACAAGGATTCGGGCAGCAAAAG
CAGTGGAGCGACATTGACGATGGTGTTGTTGGTCGGCTCAGTGCTTTATT
TTCCGTCACAAGCGGAGATGTACGAATTCATGCAGGTTCGCAAATAATGG
ACAGATGGAGGGAGGGAGGGAGTACAGAAAATTTGATAAACTCACCACGT
TGTTTGTCGATGAGTGATCAATGAGGACTGTGTGTTTTAGACGAGCAGTG
CATTCCCATTCCTCTATTTTGATACATTCCCTCTTGCGCTCGGTGTCCTA
ACGTCCATCATCTTTTGCACGCACCCACACAGCCCAAGGTGGCCGCCGCT
ATGCGTGAAAAGGGTCTTTATGACCCTACGTATGAAGGTCCTTGTACCTC
CAGCGGTAACAATGACGACAACAACAAGAACACCAGCAGGAGTAGCAATG
CTAATCCTGCAGTGAATGAGCTAGGGGAGGGGAACAACGTCCTCACCTCC
GTTACACGACGGCAACGGCGGCTCCAACGATATAAGGGCGACAATACCGA
CGGGAATGGCATATCTAGTTGTGCTGATGTCGTCCAAGCCTTCAACAGCG
AGGGAGGTGGAGACGAGGCGACCTACGCCCACCTCTACACCTGCAACATC
ACGGCCAGCACGCCCGATGGCCCCTCACCCGTCATGCACCGCTTATCATT
CGATGGGCTCCAGCCCGAGGATTTCCCATACACGTATTGGGTGTTTCTCA
ATATCAATCCTGCCTCCCTCACGACCTCGCCCTCCTCCTCCTCCTTGTCC
TTTTCCTCGTTTTCTGCTAACCAGACCATTAGATACGAGGCTGCCTTTTC
TCCTCCATTTATCCCCAGCAGCAGCAAGGTGGTCGAGCCGTTGTTCGCCA
TCCTTCTGCTGGTGGCTGCCTTGTATTTCGTGCTCTTCAGCCGATACATC
TCAAATCCGACCTTGGATTGGTTGAGCACCACCAGATGGGGTAAGCGCTG
TTTGAGAGGAGGGGTGAGTTAAGACAGGGAGATGAAGAGGAGCAGGAGTA
GAAGGGAGAAGGAATGGGGAAAGAAAGGGTGGACCTGGTTTAAAAAAATA
TGGACGGTGGAGGAGGAGAAGGAGCAAGGTAAGTGAAATTTCTAGGAAGA
GTATGCCTCGCTGGGTGTTGGTGGGTACAGCGACCAAAATGATGAGGGAG
AAAAAATTAAATTACGAAAATTTATGCATGCATGCTGTGTGGCTTTAAGT
CTGCGGCCTGTGCTATGAGTGAACGGCCAATGCGCGAGCATGTCTTAAAA
TTGTAGGAGGGAGG

protein sequence of jgi.p|Nanoce1779_2|596731

>mRNA_6904-protein ID=mRNA_6904-protein|Name=jgi.p|Nanoce1779_2|596731|organism=Nannochloropsis oceanica|type=polypeptide|length=230bp
MDTSRQRRPWHRSTVHLTVLAVAATLLPTQTTAAGPSPPSFAKHLSTRLR
QQSSTPPLPTYTVTLAPCTPLPVLSNCSAVPQTFHDNVEACAHISFSAFG
QKATMAHLSFVLVEEEGEHGLAALPELQVVHEDGGKKRTEGQSSGDSGDH
NGKRRTLEGVSLIRSGSQKGEVPDVKGIESDTNESNYVDLDKDSGSKSSG
ATLTMVLLVGSVLYFPSQAEMYEFMQVRK*

mRNA from alignment at scaffold_17:392606..394469-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6904 ID=mRNA_6904|Name=jgi.p|Nanoce1779_2|596731|organism=Nannochloropsis oceanica|type=mRNA|length=1864bp|location=Sequence derived from alignment at scaffold_17:392606..394469- (Nannochloropsis oceanica)
AGAGAAAATGGACACAAGTCGACAAAGAAGACCATGGCATAGAAGCACCG
TCCATCTGACTGTGCTCGCGGTGGCAGCCACACTCCTCCCCACCCAGACC
ACTGCTGCCGGCCCATCACCACCCTCCTTCGCAAAACACCTCTCCACACG
ACTCCGCCAACAATCATCAACCCCACCATTGCCCACTTACACCGTCACAT
TGGCCCCATGCACACCTTTGCCTGTCCTGAGCAATTGCAGTGCGGTGCCT
CAGACCTTCCATGATAACGTCGAGGCCTGCGCCCACATTTCATTTTCCGC
CTTCGGCCAGAAAGCCACGATGGCGCACCTCAGTTTTGTGTTGGTGGAAG
AGGAGGGTGAACATGGACTTGCTGCATTGCCTGAATTACAAGTCGTGCAT
GAGGATGGTGGGAAGAAGCGGACAGAGGGGCAGAGTAGTGGTGACAGCGG
CGACCACAACGGCAAGAGGAGGACGTTGGAGGGTGTATCTTTAATCCGTT
CCGGCTCCCAGAAGGGGGAAGTCCCAGACGTAAAGGGCATCGAGAGCGAT
ACAAATGAAAGCAATTATGTTGACCTCGACAAGGATTCGGGCAGCAAAAG
CAGTGGAGCGACATTGACGATGGTGTTGTTGGTCGGCTCAGTGCTTTATT
TTCCGTCACAAGCGGAGATGTACGAATTCATGCAGGTTCGCAAATAATGG
ACAGATGGAGGGAGGGAGGGAGTACAGAAAATTTGATAAACTCACCACGT
TGTTTGTCGATGAGTGATCAATGAGGACTGTGTGTTTTAGACGAGCAGTG
CATTCCCATTCCTCTATTTTGATACATTCCCTCTTGCGCTCGGTGTCCTA
ACGTCCATCATCTTTTGCACGCACCCACACAGCCCAAGGTGGCCGCCGCT
ATGCGTGAAAAGGGTCTTTATGACCCTACGTATGAAGGTCCTTGTACCTC
CAGCGGTAACAATGACGACAACAACAAGAACACCAGCAGGAGTAGCAATG
CTAATCCTGCAGTGAATGAGCTAGGGGAGGGGAACAACGTCCTCACCTCC
GTTACACGACGGCAACGGCGGCTCCAACGATATAAGGGCGACAATACCGA
CGGGAATGGCATATCTAGTTGTGCTGATGTCGTCCAAGCCTTCAACAGCG
AGGGAGGTGGAGACGAGGCGACCTACGCCCACCTCTACACCTGCAACATC
ACGGCCAGCACGCCCGATGGCCCCTCACCCGTCATGCACCGCTTATCATT
CGATGGGCTCCAGCCCGAGGATTTCCCATACACGTATTGGGTGTTTCTCA
ATATCAATCCTGCCTCCCTCACGACCTCGCCCTCCTCCTCCTCCTTGTCC
TTTTCCTCGTTTTCTGCTAACCAGACCATTAGATACGAGGCTGCCTTTTC
TCCTCCATTTATCCCCAGCAGCAGCAAGGTGGTCGAGCCGTTGTTCGCCA
TCCTTCTGCTGGTGGCTGCCTTGTATTTCGTGCTCTTCAGCCGATACATC
TCAAATCCGACCTTGGATTGGTTGAGCACCACCAGATGGGGTAAGCGCTG
TTTGAGAGGAGGGGTGAGTTAAGACAGGGAGATGAAGAGGAGCAGGAGTA
GAAGGGAGAAGGAATGGGGAAAGAAAGGGTGGACCTGGTTTAAAAAAATA
TGGACGGTGGAGGAGGAGAAGGAGCAAGGTAAGTGAAATTTCTAGGAAGA
GTATGCCTCGCTGGGTGTTGGTGGGTACAGCGACCAAAATGATGAGGGAG
AAAAAATTAAATTACGAAAATTTATGCATGCATGCTGTGTGGCTTTAAGT
CTGCGGCCTGTGCTATGAGTGAACGGCCAATGCGCGAGCATGTCTTAAAA
TTGTAGGAGGGAGG

Coding sequence (CDS) from alignment at scaffold_17:392606..394469-

>mRNA_6904 ID=mRNA_6904|Name=jgi.p|Nanoce1779_2|596731|organism=Nannochloropsis oceanica|type=CDS|length=690bp|location=Sequence derived from alignment at scaffold_17:392606..394469- (Nannochloropsis oceanica)
ATGGACACAAGTCGACAAAGAAGACCATGGCATAGAAGCACCGTCCATCT
GACTGTGCTCGCGGTGGCAGCCACACTCCTCCCCACCCAGACCACTGCTG
CCGGCCCATCACCACCCTCCTTCGCAAAACACCTCTCCACACGACTCCGC
CAACAATCATCAACCCCACCATTGCCCACTTACACCGTCACATTGGCCCC
ATGCACACCTTTGCCTGTCCTGAGCAATTGCAGTGCGGTGCCTCAGACCT
TCCATGATAACGTCGAGGCCTGCGCCCACATTTCATTTTCCGCCTTCGGC
CAGAAAGCCACGATGGCGCACCTCAGTTTTGTGTTGGTGGAAGAGGAGGG
TGAACATGGACTTGCTGCATTGCCTGAATTACAAGTCGTGCATGAGGATG
GTGGGAAGAAGCGGACAGAGGGGCAGAGTAGTGGTGACAGCGGCGACCAC
AACGGCAAGAGGAGGACGTTGGAGGGTGTATCTTTAATCCGTTCCGGCTC
CCAGAAGGGGGAAGTCCCAGACGTAAAGGGCATCGAGAGCGATACAAATG
AAAGCAATTATGTTGACCTCGACAAGGATTCGGGCAGCAAAAGCAGTGGA
GCGACATTGACGATGGTGTTGTTGGTCGGCTCAGTGCTTTATTTTCCGTC
ACAAGCGGAGATGTACGAATTCATGCAGGTTCGCAAATAA

Synonyms

Publications