jgi.p|Nanoce1779_2|596728, mRNA_6903 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596728
Unique NamemRNA_6903
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1179
Alignment locationscaffold_17:390832..392010 +

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Properties
Property NameValue
TranscriptId596814
TrackFilteredModels2
ProteinId596728
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:390832..392010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596728gene_6903Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596728mRNA_6903-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6903CDS_6903Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6903 ID=mRNA_6903|Name=jgi.p|Nanoce1779_2|596728|organism=Nannochloropsis oceanica|type=mRNA|length=1179bp
GCAGCAGCAGCAGCAGCAGCAGCCACAACATCAGCGGAGAGCTCAGGCAC
TCCTTCAAATAGAAGGAGGAGAAGAAGGAAGAAATGAAGAAAAGGGAGAC
GAGGGCGAGGACGAGGAGAGTGAAAGGCGATTTGTTGATTTATGGTGTCC
ACGTCTGGCGGGTTCCAATATATTTGAACGCGTGAGTGTGTTTGTCAAAA
GCGCGTACCTCGAATACTTCATTGATATTATCATCATTGCTAATCTGGCC
TTGGCTCTTGTGGCGCATGAGGAAAGGACGAACCATTCGTCCTCCACGCT
TAGCCCGACACCATCCCCATCAGTAGCACCAGCAAGAGCAGGTCCCGGAG
AAGGTGCGTTTGTAACAGCAGCGGCTGCTGCCCTTGACGATGAACCCACC
CAATCAGGCCAAACAATTTTGTCCCAACGGGATTTTTCTCTGGTCGCGGC
CGCTATTTTCACAGTGGAAGTTGTGGCCAAGTTATTTGTTCACGGGTATA
GACGGTACGTCTCCTCCTATATGAACCTCTTCGATGCCACCCTCACTTTC
CTTACCGTCGGTGGGGCAATCTATGAATTTAGCAGTAGCAGTAGCGGTGG
TAGTGGTGGTAATAGTAGCAGCAACAGTCAGCGACACGCGCCATTTTTGG
TGTTTGAGCTTCTCCGAATCCTTCGTCTCTTTAGGGCTTTGATGGCCGTG
CCTCAATTCAGGACAACAGGGCATGCATTTGTAAAGATCTTGCCTTCGGC
TTCGTCCTTGTTTTTGAATTTATTTGCGGTTACCTTCGTATTTGCCGCCG
TTGGGTTAGAAGCGTATGGAGGGCTGGTGAACACCGATCAGGCGAAGGTT
GAATTTGAGGTATTGGCGCCAACGTATTATTACGAAAAAGGTCTATTCAT
CTTCAATTTCAACGATTTGGGCGGTGGATTTATTATATTGGTGGAGTTAT
TGATTGATTCTAGTTTGATTCAGCCTTTTAATGAGGCGTTAGGGGCATTG
GTGGCAGGAGGAGGGGGAGGAGGGAGGGTGGGGACGATGCTTTATTTCGT
GAGTTATTATTGTTTGGGCCAGTTGGTGCTGTTAAATATTGTGGTTTGTT
TCATTTTGGATGCATTTTTGTACGAAAGGCAAGAAGATAAAATGGAGGAA
AAGCAGGAGGAAGGGAGGGAGGAAGGGAA
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protein sequence of jgi.p|Nanoce1779_2|596728

>mRNA_6903-protein ID=mRNA_6903-protein|Name=jgi.p|Nanoce1779_2|596728|organism=Nannochloropsis oceanica|type=polypeptide|length=219bp
MNLFDATLTFLTVGGAIYEFSSSSSGGSGGNSSSNSQRHAPFLVFELLRI
LRLFRALMAVPQFRTTGHAFVKILPSASSLFLNLFAVTFVFAAVGLEAYG
GLVNTDQAKVEFEVLAPTYYYEKGLFIFNFNDLGGGFIILVELLIDSSLI
QPFNEALGALVAGGGGGGRVGTMLYFVSYYCLGQLVLLNIVVCFILDAFL
YERQEDKMEEKQEEGREEG
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mRNA from alignment at scaffold_17:390832..392010+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6903 ID=mRNA_6903|Name=jgi.p|Nanoce1779_2|596728|organism=Nannochloropsis oceanica|type=mRNA|length=1179bp|location=Sequence derived from alignment at scaffold_17:390832..392010+ (Nannochloropsis oceanica)
GCAGCAGCAGCAGCAGCAGCAGCCACAACATCAGCGGAGAGCTCAGGCAC
TCCTTCAAATAGAAGGAGGAGAAGAAGGAAGAAATGAAGAAAAGGGAGAC
GAGGGCGAGGACGAGGAGAGTGAAAGGCGATTTGTTGATTTATGGTGTCC
ACGTCTGGCGGGTTCCAATATATTTGAACGCGTGAGTGTGTTTGTCAAAA
GCGCGTACCTCGAATACTTCATTGATATTATCATCATTGCTAATCTGGCC
TTGGCTCTTGTGGCGCATGAGGAAAGGACGAACCATTCGTCCTCCACGCT
TAGCCCGACACCATCCCCATCAGTAGCACCAGCAAGAGCAGGTCCCGGAG
AAGGTGCGTTTGTAACAGCAGCGGCTGCTGCCCTTGACGATGAACCCACC
CAATCAGGCCAAACAATTTTGTCCCAACGGGATTTTTCTCTGGTCGCGGC
CGCTATTTTCACAGTGGAAGTTGTGGCCAAGTTATTTGTTCACGGGTATA
GACGGTACGTCTCCTCCTATATGAACCTCTTCGATGCCACCCTCACTTTC
CTTACCGTCGGTGGGGCAATCTATGAATTTAGCAGTAGCAGTAGCGGTGG
TAGTGGTGGTAATAGTAGCAGCAACAGTCAGCGACACGCGCCATTTTTGG
TGTTTGAGCTTCTCCGAATCCTTCGTCTCTTTAGGGCTTTGATGGCCGTG
CCTCAATTCAGGACAACAGGGCATGCATTTGTAAAGATCTTGCCTTCGGC
TTCGTCCTTGTTTTTGAATTTATTTGCGGTTACCTTCGTATTTGCCGCCG
TTGGGTTAGAAGCGTATGGAGGGCTGGTGAACACCGATCAGGCGAAGGTT
GAATTTGAGGTATTGGCGCCAACGTATTATTACGAAAAAGGTCTATTCAT
CTTCAATTTCAACGATTTGGGCGGTGGATTTATTATATTGGTGGAGTTAT
TGATTGATTCTAGTTTGATTCAGCCTTTTAATGAGGCGTTAGGGGCATTG
GTGGCAGGAGGAGGGGGAGGAGGGAGGGTGGGGACGATGCTTTATTTCGT
GAGTTATTATTGTTTGGGCCAGTTGGTGCTGTTAAATATTGTGGTTTGTT
TCATTTTGGATGCATTTTTGTACGAAAGGCAAGAAGATAAAATGGAGGAA
AAGCAGGAGGAAGGGAGGGAGGAAGGGAA
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Coding sequence (CDS) from alignment at scaffold_17:390832..392010+

>mRNA_6903 ID=mRNA_6903|Name=jgi.p|Nanoce1779_2|596728|organism=Nannochloropsis oceanica|type=CDS|length=659bp|location=Sequence derived from alignment at scaffold_17:390832..392010+ (Nannochloropsis oceanica)
ATGAACCTCTTCGATGCCACCCTCACTTTCCTTACCGTCGGTGGGGCAAT
CTATGAATTTAGCAGTAGCAGTAGCGGTGGTAGTGGTGGTAATAGTAGCA
GCAACAGTCAGCGACACGCGCCATTTTTGGTGTTTGAGCTTCTCCGAATC
CTTCGTCTCTTTAGGGCTTTGATGGCCGTGCCTCAATTCAGGACAACAGG
GCATGCATTTGTAAAGATCTTGCCTTCGGCTTCGTCCTTGTTTTTGAATT
TATTTGCGGTTACCTTCGTATTTGCCGCCGTTGGGTTAGAAGCGTATGGA
GGGCTGGTGAACACCGATCAGGCGAAGGTTGAATTTGAGGTATTGGCGCC
AACGTATTATTACGAAAAAGGTCTATTCATCTTCAATTTCAACGATTTGG
GCGGTGGATTTATTATATTGGTGGAGTTATTGATTGATTCTAGTTTGATT
CAGCCTTTTAATGAGGCGTTAGGGGCATTGGTGGCAGGAGGAGGGGGAGG
AGGGAGGGTGGGGACGATGCTTTATTTCGTGAGTTATTATTGTTTGGGCC
AGTTGGTGCTGTTAAATATTGTGGTTTGTTTCATTTTGGATGCATTTTTG
TACGAAAGGCAAGAAGATAAAATGGAGGAAAAGCAGGAGGAAGGGAGGGA
GGAAGGGAA
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Synonyms
Publications