jgi.p|Nanoce1779_2|596721, mRNA_6901 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596721
Unique NamemRNA_6901
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length881
Alignment locationscaffold_17:385311..386222 +

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Properties
Property NameValue
TranscriptId596807
TrackFilteredModels2
ProteinId596721
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:385311..386222 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596721gene_6901Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596721mRNA_6901-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6901CDS_6901Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6901 ID=mRNA_6901|Name=jgi.p|Nanoce1779_2|596721|organism=Nannochloropsis oceanica|type=mRNA|length=881bp
CAGCTCGCAGAGGAAGACATAGGATCTCTGGCCTCAATCCTGCCAGCAGG
TATGCCTCCAATAACACCGCTACTCCTCCTCCACGCCGGCCTCCTGACCC
TCGCCTTCCAGCCCTCGTACCACCGCCACCGCCAGCAGCGGCGTCCCCCA
TTTATCACTCTTTCGGCCTCGACAAGTGATAAGCCCTTGGTTGCCGAAGG
CATTGACATCCAATGCCCTCCCCCCGGCATTCCTACCCCTCTGGCACAAG
GCTGTCTTTTGGTAGCTAAGCCCTGGGAGTACAATCACTTTACGAGCAAA
AGCTGCCTTTTCCTGTACAAGTATGACCCCGAAACCGGCTCGCGCGGTGT
TGTATTAGAGAGGCCCACGGCGTTTACACTTTCCGAGTTGGCCCCGCCGT
TCTCTTCGTCCGTTTTTTCGAATCATACTGTGTTTTTGGGAGGGGAGCAA
GGGGGGGACATGGCGGTATTGCTGCACCCGTATGGACAGATTCCAGGGGC
GCGGTCGGTGGGTGGAGGTCTATTTTATGGAGGGCTGAAAGGGGCCGAGG
CGATGCTGAAGGAGCAGGAAGGTGAGTTTGTGTTAAGGGTGGTTTACTCT
TTTAACAATTCGTCTCCGATACTCCTTCCTAGTCCCCTCCCTTCTTCCTT
TCCCCCATTCCTCCATCCCCCCTCCACCCACCAGATGGAACTGCCGACCA
CGGATTAGACCCCAATAGATTCAAATGGTGGTTTAATTACATGTCCTGGG
GCCCGGGGCAACTTGAAGAACAAATCGCTAATGGGAGCTGGGACGTGATG
GAGGGAGGGAAGGAGGGAGGGGAGGGTGTGGCGGGGGCGGTATTGAGACA
GGGGATAGCGTTGGAGAGAGAATTGTGGAAG
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protein sequence of jgi.p|Nanoce1779_2|596721

>mRNA_6901-protein ID=mRNA_6901-protein|Name=jgi.p|Nanoce1779_2|596721|organism=Nannochloropsis oceanica|type=polypeptide|length=219bp
MPPITPLLLLHAGLLTLAFQPSYHRHRQQRRPPFITLSASTSDKPLVAEG
IDIQCPPPGIPTPLAQGCLLVAKPWEYNHFTSKSCLFLYKYDPETGSRGV
VLERPTAFTLSELAPPFSSSVFSNHTVFLGGEQGGDMAVLLHPYGQIPGA
RSVGGGLFYGGLKGAEAMLKEQEGEFVLRVVYSFNNSSPILLPSPLPSSF
PPFLHPPSTHQMELPTTD*
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mRNA from alignment at scaffold_17:385311..386222+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6901 ID=mRNA_6901|Name=jgi.p|Nanoce1779_2|596721|organism=Nannochloropsis oceanica|type=mRNA|length=912bp|location=Sequence derived from alignment at scaffold_17:385311..386222+ (Nannochloropsis oceanica)
CAGCTCGCAGAGGAAGACATAGGATCTCTGGCCTCAATCCTGCCAGCAGG
TATGCCTCCAATAACACCGCTACTCCTCCTCCACGCCGGCCTCCTGACCC
TCGCCTTCCAGCCCTCGTACCACCGCCACCGCCAGCAGCGGCGTCCCCCA
TTTATCACTCTTTCGGCCTCGACAAGTGATAAGCCCTTGGTTGCCGAAGG
CATTGACATCCAATGCCCTCCCCCCGGCATTCCTACCCCTCTGGCACAAG
GCTGTCTTTTGGTAGCTAAGCCCTGGGAGTACAATCACTTTACGAGCAAA
AGCTGCCTTTTCCTGTACAAGTATGACCCCGAAACCGGCTCGCGCGGTGT
TGTATTAGAGAGGCCCACGGCGTTTACACTTTCCGAGTTGGCCCCGCCGT
TCTCTTCGTCCGTTTTTTCGAATCATACTGTGTTTTTGGGAGGGGAGCAA
GGGGGGGACATGGCGGTATTGCTGCACCCGTATGGACAGATTCCAGGGGC
GCGGTCGGTGGGTGGAGGTCTATTTTATGGAGGGCTGAAAGGGGCCGAGG
CGATGCTGAAGGAGCAGGAAGGTGAGTTTGTGTTAAGGGTGGTTTACTCT
TTTAACAATTCGTCTCCGATACTCCTTCCTAGTCCCCTCCCTTCCTCCCC
CCCCCCTCCCTCCTTCCCTCCCTTCTTCCTTTCCCCCATTCCTCCATCCC
CCCTCCACCCACCAGATGGAACTGCCGACCACGGATTAGACCCCAATAGA
TTCAAATGGTGGTTTAATTACATGTCCTGGGGCCCGGGGCAACTTGAAGA
ACAAATCGCTAATGGGAGCTGGGACGTGATGGAGGGAGGGAAGGAGGGAG
GGGAGGGTGTGGCGGGGGCGGTATTGAGACAGGGGATAGCGTTGGAGAGA
GAATTGTGGAAG
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Coding sequence (CDS) from alignment at scaffold_17:385311..386222+

>mRNA_6901 ID=mRNA_6901|Name=jgi.p|Nanoce1779_2|596721|organism=Nannochloropsis oceanica|type=CDS|length=1314bp|location=Sequence derived from alignment at scaffold_17:385311..386222+ (Nannochloropsis oceanica)
ATGCCTCCAATAACACCGCTACTCCTCCTCCACGCCGGCCTCCTGACCCT
CGCCTTCCAGCCCTCGTACCACCGCCACCGCCAGCAGCGGCGTCCCCCAT
TTATCACTCTTTCGGCCTCGACAAGTGATAAGCCCTTGGTTGCCGAAGGC
ATTGACATCCAATGCCCTCCCCCCGGCATTCCTACCCCTCTGGCACAAGG
CTGTCTTTTGGTAGCTAAGCCCTGGGAGTACAATCACTTTACGAGCAAAA
GCTGCCTTTTCCTGTACAAGTATGACCCCGAAACCGGCTCGCGCGGTGTT
GTATTAGAGAGGCCCACGGCGTTTACACTTTCCGAGTTGGCCCCGCCGTT
CTCTTCGTCCGTTTTTTCGAATCATACTGTGTTTTTGGGAGGGGAGCAAG
GGGGGGACATGGCGGTATTGCTGCACCCGTATGGACAGATTCCAGGGGCG
CGGTCGGTGGGTGGAGGTCTATTTTATGGAGGGCTGAAAGGGGCCGAGGC
GATGCTGAAGGAGCAGGAAGGTGAGTTTGTGTTAAGGGTGGTTTACTCTT
TTAACAATTCGTCTCCGATACTCCTTCCTAGTCCCCTCCCTTCTTCCTTT
CCCCCATTCCTCCATCCCCCCTCCACCCACCAGATGGAACTGCCGACCAC
GGATTAGATGCCTCCAATAACACCGCTACTCCTCCTCCACGCCGGCCTCC
TGACCCTCGCCTTCCAGCCCTCGTACCACCGCCACCGCCAGCAGCGGCGT
CCCCCATTTATCACTCTTTCGGCCTCGACAAGTGATAAGCCCTTGGTTGC
CGAAGGCATTGACATCCAATGCCCTCCCCCCGGCATTCCTACCCCTCTGG
CACAAGGCTGTCTTTTGGTAGCTAAGCCCTGGGAGTACAATCACTTTACG
AGCAAAAGCTGCCTTTTCCTGTACAAGTATGACCCCGAAACCGGCTCGCG
CGGTGTTGTATTAGAGAGGCCCACGGCGTTTACACTTTCCGAGTTGGCCC
CGCCGTTCTCTTCGTCCGTTTTTTCGAATCATACTGTGTTTTTGGGAGGG
GAGCAAGGGGGGGACATGGCGGTATTGCTGCACCCGTATGGACAGATTCC
AGGGGCGCGGTCGGTGGGTGGAGGTCTATTTTATGGAGGGCTGAAAGGGG
CCGAGGCGATGCTGAAGGAGCAGGAAGGTGAGTTTGTGTTAAGGGTGGTT
TACTCTTTTAACAATTCGTCTCCGATACTCCTTCCTAGTCCCCTCCCTTC
TTCCTTTCCCCCATTCCTCCATCCCCCCTCCACCCACCAGATGGAACTGC
CGACCACGGATTAG
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Synonyms
Publications