jgi.p|Nanoce1779_2|544531, mRNA_6900 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|544531
Unique Name	mRNA_6900
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1811
Alignment location	scaffold_17:383405..385215 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	544617
Track	FilteredModels2
ProteinId	544531

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:383405..385215 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|544531	gene_6900	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|544531	mRNA_6900-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6900	CDS_6900	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:383405..385215-
coding sequence from alignment at scaffold_17:383405..385215-

mRNA sequence

>mRNA_6900 ID=mRNA_6900|Name=jgi.p|Nanoce1779_2|544531|organism=Nannochloropsis oceanica|type=mRNA|length=1811bp
TAAACTCGCCGCGACTTTTTTAAACGCAACGGGTACGGCTCCCGGAAGTC
CCCCTGTCCATGTATACCCCACGCTCACACACCACACTCGCTCATACCCC
GTGTCCCCACCTCCACAAGGACAGGCTGTCGCCCTTGCCTTCGGCCGCTT
CCCCCCTCTTCTTTCCCATTTACCGTCTCCTTCAGTCCACAAGCCCACAT
CTATCATAATACCCCCGTCCCACAGCACGATATCACCACACTGCCACGAC
CACAGCGACATTCACACTCAATCAGGCCTTCGAGAGCACCTTCACGCTCG
GATAGAAGCCAGCCATGATCCGGTACTACATCCCGGGCGACGGGGACGAC
GCGACCCACCCCAACATCTTCCATCTACCACCTTCTGCCCGCAACCCCCC
CACGCTCCGCGATGTCCGCCAGAACTTCCCTCTACCGGGCGCGTACCATT
TCCGATTCAAGAAGCGTTTGGAGGGCACCCCAGATAACAAACCCGTTTGG
TTTGACATTACGGAAGACACCGCGGAGATCCCTGTGTGTGATGGCACCAT
CCTCGCCAAAGTCTCGAGATTGAGTATGGATGTTTCAGCTAAGCCTACCG
CCGCGGGGAGAACAGGCTTCCCCTCTTCTTCCTCCACTTCCCCATCGTCT
TCCTCACATTCCAACTCTGGGACCTCCTCCTCACCAACCACGCAATCTGC
CGCGTCGCCTGTCTCGAGGGCCACACCGCCTACAGGCGGCAGCAGTAGCA
GCAGCCGACACTTGCCGACCCCTCCCGACAGTGACCCCTTCGGTTTGTTT
CACGAAGCTCCCACGGCACCGACGGGTGGTGGTGGAGTCCAGCGAAACGT
CAGTGCGCCCATGAGCAACAACGGCCACTCCCCGTCAATGTCCATGCAAA
GACCGCAAGGCGGGGGAGGAGGAGGAGGAGGAGGGAAAGCAGACTTACTC
GATTTCGATGCTTTTGGGAGTCATCCCCCTGCTGCTCCTCAAAAGCGGCC
CATGTCTGGGACTCCTCCTCCTCCTCATCATCATCATCAGCAGCAGCAGC
CGCCGCCAAGGGGCTACCCGCCTTCGTCGTCGGGGGGTGGGTGGATGTGA
AGCGAGGGATAGGAGGGAAAGAGGGAGGGAGGAGGTCACGCCCAGTAATT
TGTTTATAATTAAGTTCATAGGCCTGGGAAAGTAGAAAGTAAGGAGGAGA
AAAGAAATGGGAAAGTCAACAGGACGGAAGAAGACAAAAAGACGGAATAA
ATCAACGTCTCAATATTAAAAACCATAGACATGAGCAGAATGGGGGTGGG
GGGGAGAAAAGAAGGCTCGTTGGAAATTGGAGGTCGGGTAGTTTTCTACG
CTAGTCATGGGCGTATTATGCGCAAGGTCATGCGGGGTAGCTGTGGCTGG
CCAGTACCACGCTCTCGACCTACCCGGATGTACGCAAGAAGAGTTTACTT
TGACTTGCTTGATTCGTGCCTTCTTTTTATAATTTTACCTTTCCCTTTAC
AATCTTTCTCGATGCGTTTCCTCATCGCTCCCCCTCCTCTCCCTCTCCTA
TAACATACATACGCTTCCCTACAGCTTCGCCTTTCCTCTTCCTTCTGACC
GCCCTCCCTCCTCCGACCCCCCCCTTTCTTCCACCTCTTTCTCCCAAATT
GTTGCCGGGGGCCCCGTCAACTCAACCTCTCACCCCTACCGTGTCTTTTC
CTTCCCTCCTCCCCCTATCCAGCCCCTACCAAACCACCCCTTCCTCCCAC
CATTTCTTTCCTTCCCTCCTTCCCCCATCCAGCCCCTACCAAACCACCCC
TTCCTCCCACC

protein sequence of jgi.p|Nanoce1779_2|544531

>mRNA_6900-protein ID=mRNA_6900-protein|Name=jgi.p|Nanoce1779_2|544531|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MIRYYIPGDGDDATHPNIFHLPPSARNPPTLRDVRQNFPLPGAYHFRFKK
RLEGTPDNKPVWFDITEDTAEIPVCDGTILAKVSRLSMDVSAKPTAAGRT
GFPSSSSTSPSSSSHSNSGTSSSPTTQSAASPVSRATPPTGGSSSSSRHL
PTPPDSDPFGLFHEAPTAPTGGGGVQRNVSAPMSNNGHSPSMSMQRPQGG
GGGGGGGKADLLDFDAFGSHPPAAPQKRPMSGTPPPPHHHHQQQQPPPRG
YPPSSSGGGWM*

mRNA from alignment at scaffold_17:383405..385215-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6900 ID=mRNA_6900|Name=jgi.p|Nanoce1779_2|544531|organism=Nannochloropsis oceanica|type=mRNA|length=1811bp|location=Sequence derived from alignment at scaffold_17:383405..385215- (Nannochloropsis oceanica)
TAAACTCGCCGCGACTTTTTTAAACGCAACGGGTACGGCTCCCGGAAGTC
CCCCTGTCCATGTATACCCCACGCTCACACACCACACTCGCTCATACCCC
GTGTCCCCACCTCCACAAGGACAGGCTGTCGCCCTTGCCTTCGGCCGCTT
CCCCCCTCTTCTTTCCCATTTACCGTCTCCTTCAGTCCACAAGCCCACAT
CTATCATAATACCCCCGTCCCACAGCACGATATCACCACACTGCCACGAC
CACAGCGACATTCACACTCAATCAGGCCTTCGAGAGCACCTTCACGCTCG
GATAGAAGCCAGCCATGATCCGGTACTACATCCCGGGCGACGGGGACGAC
GCGACCCACCCCAACATCTTCCATCTACCACCTTCTGCCCGCAACCCCCC
CACGCTCCGCGATGTCCGCCAGAACTTCCCTCTACCGGGCGCGTACCATT
TCCGATTCAAGAAGCGTTTGGAGGGCACCCCAGATAACAAACCCGTTTGG
TTTGACATTACGGAAGACACCGCGGAGATCCCTGTGTGTGATGGCACCAT
CCTCGCCAAAGTCTCGAGATTGAGTATGGATGTTTCAGCTAAGCCTACCG
CCGCGGGGAGAACAGGCTTCCCCTCTTCTTCCTCCACTTCCCCATCGTCT
TCCTCACATTCCAACTCTGGGACCTCCTCCTCACCAACCACGCAATCTGC
CGCGTCGCCTGTCTCGAGGGCCACACCGCCTACAGGCGGCAGCAGTAGCA
GCAGCCGACACTTGCCGACCCCTCCCGACAGTGACCCCTTCGGTTTGTTT
CACGAAGCTCCCACGGCACCGACGGGTGGTGGTGGAGTCCAGCGAAACGT
CAGTGCGCCCATGAGCAACAACGGCCACTCCCCGTCAATGTCCATGCAAA
GACCGCAAGGCGGGGGAGGAGGAGGAGGAGGAGGGAAAGCAGACTTACTC
GATTTCGATGCTTTTGGGAGTCATCCCCCTGCTGCTCCTCAAAAGCGGCC
CATGTCTGGGACTCCTCCTCCTCCTCATCATCATCATCAGCAGCAGCAGC
CGCCGCCAAGGGGCTACCCGCCTTCGTCGTCGGGGGGTGGGTGGATGTGA
AGCGAGGGATAGGAGGGAAAGAGGGAGGGAGGAGGTCACGCCCAGTAATT
TGTTTATAATTAAGTTCATAGGCCTGGGAAAGTAGAAAGTAAGGAGGAGA
AAAGAAATGGGAAAGTCAACAGGACGGAAGAAGACAAAAAGACGGAATAA
ATCAACGTCTCAATATTAAAAACCATAGACATGAGCAGAATGGGGGTGGG
GGGGAGAAAAGAAGGCTCGTTGGAAATTGGAGGTCGGGTAGTTTTCTACG
CTAGTCATGGGCGTATTATGCGCAAGGTCATGCGGGGTAGCTGTGGCTGG
CCAGTACCACGCTCTCGACCTACCCGGATGTACGCAAGAAGAGTTTACTT
TGACTTGCTTGATTCGTGCCTTCTTTTTATAATTTTACCTTTCCCTTTAC
AATCTTTCTCGATGCGTTTCCTCATCGCTCCCCCTCCTCTCCCTCTCCTA
TAACATACATACGCTTCCCTACAGCTTCGCCTTTCCTCTTCCTTCTGACC
GCCCTCCCTCCTCCGACCCCCCCCTTTCTTCCACCTCTTTCTCCCAAATT
GTTGCCGGGGGCCCCGTCAACTCAACCTCTCACCCCTACCGTGTCTTTTC
CTTCCCTCCTCCCCCTATCCAGCCCCTACCAAACCACCCCTTCCTCCCAC
CATTTCTTTCCTTCCCTCCTTCCCCCATCCAGCCCCTACCAAACCACCCC
TTCCTCCCACC

Coding sequence (CDS) from alignment at scaffold_17:383405..385215-

>mRNA_6900 ID=mRNA_6900|Name=jgi.p|Nanoce1779_2|544531|organism=Nannochloropsis oceanica|type=CDS|length=786bp|location=Sequence derived from alignment at scaffold_17:383405..385215- (Nannochloropsis oceanica)
ATGATCCGGTACTACATCCCGGGCGACGGGGACGACGCGACCCACCCCAA
CATCTTCCATCTACCACCTTCTGCCCGCAACCCCCCCACGCTCCGCGATG
TCCGCCAGAACTTCCCTCTACCGGGCGCGTACCATTTCCGATTCAAGAAG
CGTTTGGAGGGCACCCCAGATAACAAACCCGTTTGGTTTGACATTACGGA
AGACACCGCGGAGATCCCTGTGTGTGATGGCACCATCCTCGCCAAAGTCT
CGAGATTGAGTATGGATGTTTCAGCTAAGCCTACCGCCGCGGGGAGAACA
GGCTTCCCCTCTTCTTCCTCCACTTCCCCATCGTCTTCCTCACATTCCAA
CTCTGGGACCTCCTCCTCACCAACCACGCAATCTGCCGCGTCGCCTGTCT
CGAGGGCCACACCGCCTACAGGCGGCAGCAGTAGCAGCAGCCGACACTTG
CCGACCCCTCCCGACAGTGACCCCTTCGGTTTGTTTCACGAAGCTCCCAC
GGCACCGACGGGTGGTGGTGGAGTCCAGCGAAACGTCAGTGCGCCCATGA
GCAACAACGGCCACTCCCCGTCAATGTCCATGCAAAGACCGCAAGGCGGG
GGAGGAGGAGGAGGAGGAGGGAAAGCAGACTTACTCGATTTCGATGCTTT
TGGGAGTCATCCCCCTGCTGCTCCTCAAAAGCGGCCCATGTCTGGGACTC
CTCCTCCTCCTCATCATCATCATCAGCAGCAGCAGCCGCCGCCAAGGGGC
TACCCGCCTTCGTCGTCGGGGGGTGGGTGGATGTGA

Synonyms

Publications