jgi.p|Nanoce1779_2|229456, mRNA_69 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|229456
Unique Name	mRNA_69
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	872
Alignment location	scaffold_3:187261..188132 -

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Properties


Property Name	Value
TranscriptId	229542
Track	FilteredModels2
ProteinId	229456

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:187261..188132 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|229456	gene_69	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|229456	mRNA_69-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_69	CDS_69	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:187261..188132-
coding sequence from alignment at scaffold_3:187261..188132-

mRNA sequence

>mRNA_69 ID=mRNA_69|Name=jgi.p|Nanoce1779_2|229456|organism=Nannochloropsis oceanica|type=mRNA|length=872bp
TATTTTTTTATTTTGTGAATGTTAAGATATTTTCGGGTTAGCTCTTTTTA
TCTCTCAGTAAGACTCTGTAAGACATATCTCGAGTTGGACTGAAGGATCT
CGAGTTGGACTGAAGGATGCATGAGGATCTCGAGTTGGACTGAAGGATGC
ATGAGGTTCTTGCTTTGCTTTCGCGTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTTTCTTCGCACCCCCCCCCTCTATTATGCCGCTTTGT
AAGGCCCTTCGTCTATCCTTACTTTCTCTTCATCGTCGCTATTGCTGCTG
TTGCTTCTTGTTCCTCTTCTTCTTTTTCTGCTTCATCGCAATCTTCTTTT
TGCTATTGTCTATTCCCCTGGTGGAAAAGGGGGAGGCGGGGCGAGGGATG
GTGGGAGAAAGGAAGATGTCGCCAGCCCTCCCCCCTTATCCTTTTTTCTC
CTATTGCCATCTTCCCTCTTGTCTCTCCTCCGGGTATGCGCAGTTCGTTG
TTGTTGTTACACTCAATGGTTCCTCCTTCCGTCCTCACGCCACGTTCTCG
GACACTAGCTCCCTGACTCCCCGACATAACGGTACTCACAAGTCTCCTTC
CCTACGCCTTTTAAACCCCCCCTCCCCCCCCCCCCCCATATCACATCACA
TGTCTTCTTAAAGAGGGCTACACATTCGCTTCCATGAGTCGTCCAATCAG
TCTCGGGTTATGCTGTATAATTACTTAGGCCTACACATCCAAACATTTGA
TCTCATCTCATGATGTATATACCCTCCTAAATCTCCGGCTTGCCATCCTC
CCTATCGTCATTGATGAAGCTC

protein sequence of jgi.p|Nanoce1779_2|229456

>mRNA_69-protein ID=mRNA_69-protein|Name=jgi.p|Nanoce1779_2|229456|organism=Nannochloropsis oceanica|type=polypeptide|length=197bp
MRISSWTEGCMRFLLCFRVSLSLSLSLSLSLSLSLSLSLSLSLSLSLSFF
APPPSIMPLCKALRLSLLSLHRRYCCCCFLFLFFFFCFIAIFFLLLSIPL
VEKGEAGRGMVGERKMSPALPPYPFFSYCHLPSCLSSGYAQFVVVVTLNG
SSFRPHATFSDTSSLTPRHNGTHKSPSLRLLNPPSPPPPISHHMSS*

mRNA from alignment at scaffold_3:187261..188132-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_69 ID=mRNA_69|Name=jgi.p|Nanoce1779_2|229456|organism=Nannochloropsis oceanica|type=mRNA|length=872bp|location=Sequence derived from alignment at scaffold_3:187261..188132- (Nannochloropsis oceanica)
TATTTTTTTATTTTGTGAATGTTAAGATATTTTCGGGTTAGCTCTTTTTA
TCTCTCAGTAAGACTCTGTAAGACATATCTCGAGTTGGACTGAAGGATCT
CGAGTTGGACTGAAGGATGCATGAGGATCTCGAGTTGGACTGAAGGATGC
ATGAGGTTCTTGCTTTGCTTTCGCGTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTTTCTTCGCACCCCCCCCCTCTATTATGCCGCTTTGT
AAGGCCCTTCGTCTATCCTTACTTTCTCTTCATCGTCGCTATTGCTGCTG
TTGCTTCTTGTTCCTCTTCTTCTTTTTCTGCTTCATCGCAATCTTCTTTT
TGCTATTGTCTATTCCCCTGGTGGAAAAGGGGGAGGCGGGGCGAGGGATG
GTGGGAGAAAGGAAGATGTCGCCAGCCCTCCCCCCTTATCCTTTTTTCTC
CTATTGCCATCTTCCCTCTTGTCTCTCCTCCGGGTATGCGCAGTTCGTTG
TTGTTGTTACACTCAATGGTTCCTCCTTCCGTCCTCACGCCACGTTCTCG
GACACTAGCTCCCTGACTCCCCGACATAACGGTACTCACAAGTCTCCTTC
CCTACGCCTTTTAAACCCCCCCTCCCCCCCCCCCCCCATATCACATCACA
TGTCTTCTTAAAGAGGGCTACACATTCGCTTCCATGAGTCGTCCAATCAG
TCTCGGGTTATGCTGTATAATTACTTAGGCCTACACATCCAAACATTTGA
TCTCATCTCATGATGTATATACCCTCCTAAATCTCCGGCTTGCCATCCTC
CCTATCGTCATTGATGAAGCTC

Coding sequence (CDS) from alignment at scaffold_3:187261..188132-

>mRNA_69 ID=mRNA_69|Name=jgi.p|Nanoce1779_2|229456|organism=Nannochloropsis oceanica|type=CDS|length=591bp|location=Sequence derived from alignment at scaffold_3:187261..188132- (Nannochloropsis oceanica)
ATGAGGATCTCGAGTTGGACTGAAGGATGCATGAGGTTCTTGCTTTGCTT
TCGCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTC
GCACCCCCCCCCTCTATTATGCCGCTTTGTAAGGCCCTTCGTCTATCCTT
ACTTTCTCTTCATCGTCGCTATTGCTGCTGTTGCTTCTTGTTCCTCTTCT
TCTTTTTCTGCTTCATCGCAATCTTCTTTTTGCTATTGTCTATTCCCCTG
GTGGAAAAGGGGGAGGCGGGGCGAGGGATGGTGGGAGAAAGGAAGATGTC
GCCAGCCCTCCCCCCTTATCCTTTTTTCTCCTATTGCCATCTTCCCTCTT
GTCTCTCCTCCGGGTATGCGCAGTTCGTTGTTGTTGTTACACTCAATGGT
TCCTCCTTCCGTCCTCACGCCACGTTCTCGGACACTAGCTCCCTGACTCC
CCGACATAACGGTACTCACAAGTCTCCTTCCCTACGCCTTTTAAACCCCC
CCTCCCCCCCCCCCCCCATATCACATCACATGTCTTCTTAA

Synonyms

Publications