jgi.p|Nanoce1779_2|596709, mRNA_6897 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596709
Unique NamemRNA_6897
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length397
Alignment locationscaffold_17:378529..378925 +

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Properties
Property NameValue
TranscriptId596795
TrackFilteredModels2
ProteinId596709
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:378529..378925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596709gene_6897Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596709mRNA_6897-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6897CDS_6897Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6897 ID=mRNA_6897|Name=jgi.p|Nanoce1779_2|596709|organism=Nannochloropsis oceanica|type=mRNA|length=397bp
CTTTGGAAGCGCACGTTTCCTTTACATCACGCTGCATTTTTCTCAGAAGG
AGGTCCTTTCGCGCACTGGTGGAATGTTGGGACGTTGGGCACAGGGGGCG
ACGTGGCTGATTGCAGACGTCAATGTTGGCGTTGCTAGTACTGCGTCACT
ATCACGTTATGTACCTGGATTGCCTTGTACATGGCGTCAAGTGCGTTTGT
TTCGTGTCTCAACGACTGCCCATTTCGTTTCATGCTGCGCGTGCGTGCGT
AAGTACTGTTCTTGTCATCTGAGGCTGAATGCTTTCCTTCCTGCTCTCGC
CGATTGCACTCATTGGCGCCATGCATGCCATCCGTAAGCAGCAAACTATG
GATACGGGTGGCTCCTCATCACCTTTATGGCTGCCTAGTTGCCGACT
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protein sequence of jgi.p|Nanoce1779_2|596709

>mRNA_6897-protein ID=mRNA_6897-protein|Name=jgi.p|Nanoce1779_2|596709|organism=Nannochloropsis oceanica|type=polypeptide|length=88bp
MLGRWAQGATWLIADVNVGVASTASLSRYVPGLPCTWRQVRLFRVSTTAH
FVSCCACVRKYCSCHLRLNAFLPALADCTHWRHACHP*
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mRNA from alignment at scaffold_17:378529..378925+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6897 ID=mRNA_6897|Name=jgi.p|Nanoce1779_2|596709|organism=Nannochloropsis oceanica|type=mRNA|length=397bp|location=Sequence derived from alignment at scaffold_17:378529..378925+ (Nannochloropsis oceanica)
CTTTGGAAGCGCACGTTTCCTTTACATCACGCTGCATTTTTCTCAGAAGG
AGGTCCTTTCGCGCACTGGTGGAATGTTGGGACGTTGGGCACAGGGGGCG
ACGTGGCTGATTGCAGACGTCAATGTTGGCGTTGCTAGTACTGCGTCACT
ATCACGTTATGTACCTGGATTGCCTTGTACATGGCGTCAAGTGCGTTTGT
TTCGTGTCTCAACGACTGCCCATTTCGTTTCATGCTGCGCGTGCGTGCGT
AAGTACTGTTCTTGTCATCTGAGGCTGAATGCTTTCCTTCCTGCTCTCGC
CGATTGCACTCATTGGCGCCATGCATGCCATCCGTAAGCAGCAAACTATG
GATACGGGTGGCTCCTCATCACCTTTATGGCTGCCTAGTTGCCGACT
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Coding sequence (CDS) from alignment at scaffold_17:378529..378925+

>mRNA_6897 ID=mRNA_6897|Name=jgi.p|Nanoce1779_2|596709|organism=Nannochloropsis oceanica|type=CDS|length=264bp|location=Sequence derived from alignment at scaffold_17:378529..378925+ (Nannochloropsis oceanica)
ATGTTGGGACGTTGGGCACAGGGGGCGACGTGGCTGATTGCAGACGTCAA
TGTTGGCGTTGCTAGTACTGCGTCACTATCACGTTATGTACCTGGATTGC
CTTGTACATGGCGTCAAGTGCGTTTGTTTCGTGTCTCAACGACTGCCCAT
TTCGTTTCATGCTGCGCGTGCGTGCGTAAGTACTGTTCTTGTCATCTGAG
GCTGAATGCTTTCCTTCCTGCTCTCGCCGATTGCACTCATTGGCGCCATG
CATGCCATCCGTAA
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Synonyms
Publications