jgi.p|Nanoce1779_2|596686, mRNA_6892 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596686
Unique NamemRNA_6892
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length678
Alignment locationscaffold_17:365359..366674 +

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Properties
Property NameValue
TranscriptId596772
TrackFilteredModels2
ProteinId596686
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:365359..366674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596686gene_6892Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596686mRNA_6892-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6892CDS_6892Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6892 ID=mRNA_6892|Name=jgi.p|Nanoce1779_2|596686|organism=Nannochloropsis oceanica|type=mRNA|length=678bp
ACAGGCAAGGGCACAAAGCAAGCTATCAGACGCCTGCATTCTTTGCCTCC
TCCGTCGCGTTTTTTCTCCACTATTACGTTATCAATTAGACCCCAGCGCA
CTCCATTACTTCTACTACATCATTAAACACAATGTTGCCCTTGTCCCTCC
TCAAGACGGCGCAAGGCCACCCAATGTTGGTGGAGCTTAAAAATGGCGAC
ACTTACAATGGCCGGCTAGTATCGTGTGATACCTGGATGAACATCACGTT
GAGGGACGTCATCTGCACGTCACGGGATGGTGACCGCTTCTGGAAGATCC
CCGAGTGCTACGTGCGTGGGAACAGCATCAAGTACCTGCGGGTGCCGGAG
GAAGTGATCGACATGGTCAACGAGGAGGACTTGGAAAGGGAACGCAGGGG
AGGTGCCGGGCGAGGACGCGGGCGATTGGGTGGGGGCCGGGGAGGACGAG
GTAAGGGAACCGAACGGAAGGGAGCAAAATGGATGTAGGGACAGAGAACG
TGATAGAGACAGACACAACCCAGATCGCAATTTCACTTAAACCCGCGATC
ACACACACTGCTTTGCTTATACCAACGAATCCCAAACAGGGTATGGTCGA
GGTGGCGGGGAGGGTCGTGGTGGCGCCCGGGGAGATTTTCGCGGCGGGCG
TGGCGGGGGTGACCGAGGGGGACGAGGG
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protein sequence of jgi.p|Nanoce1779_2|596686

>mRNA_6892-protein ID=mRNA_6892-protein|Name=jgi.p|Nanoce1779_2|596686|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MLPLSLLKTAQGHPMLVELKNGDTYNGRLVSCDTWMNITLRDVICTSRDG
DRFWKIPECYVRGNSIKYLRVPEEVIDMVNEEDLERERRGGAGRGRGRLG
GGRGGRGKGTERKGAKWM*
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mRNA from alignment at scaffold_17:365359..366674+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6892 ID=mRNA_6892|Name=jgi.p|Nanoce1779_2|596686|organism=Nannochloropsis oceanica|type=mRNA|length=1316bp|location=Sequence derived from alignment at scaffold_17:365359..366674+ (Nannochloropsis oceanica)
ACAGGCAAGGGCACAAAGCAAGCTATCAGACGCCTGCATTCTTTGCCTCC
TCCGTCGCGTTTTTTCTCCACTATTACGTTATCAATTAGACCCCAGCGCA
CTCCATTACTTCTACTACATCATTAAACACAATGGTAAGATCATTGGGAT
AACATGCCAGCGTTTCCTTGGACTCTTAGAACTTCGTGCCCGAGCCTGAA
CCAACCTGCCCCTCCTTCCTACCCACCGTCTACTTAGTTGCCCTTGTCCC
TCCTCAAGACGGCGCAAGGCCACCCAATGTTGGTGGAGCTTAAAAATGGC
GACACTTACAATGGCCGGCTAGTATCGTGTGATACCTGGATGAACATCAC
GTTGAGGGACGTCATCTGCACGTCACGGGTAGGAGAGGGTTAGAGAGGGG
TGGGAAAGATGGGAGAAAAGGTCCGAAGGGTGAGAGAGAGGTTGCAATAA
TATGATCTGAATTCTGATTGAGAAGTGGGCGGATAACCTGAGGCAGAAAG
TATGTATCATCGTTTAGAGCGCTGCAGAGGGGGTAACGAGGGCGTTGGCG
TGACATGCTTTCTGTTTTGTCAAAACGCGTAAAGGAGATGGGGAGCAGAC
AATTACTTACAACATCTCCTCCACTCCTTCCCCATTGGTCTTCGTCCACC
ATGATTGCGCAGGATGGTGACCGCTTCTGGAAGATCCCCGAGTGCTACGT
GCGTGGGAACAGCATCAAGTACCTGCGGGTGCCGGAGGAAGTGATCGACA
TGGTCAACGAGGAGGACTTGGAAAGGGAACGTGCGTATGCCATGGGGTGG
GGGCTGTCGAACACTTCGTTTGCTTTATTTTCAATTGTGGTTCATACTGC
TTCCAAGGAGAGATGATGGGGGTATCTCTTTGTGCATGTGTGTTTGTGTG
TGTTTGTTATCGTGTGGTAGCACCAGGGGGCGGTTGAGTTTTTGTGTGCA
TGTGTCTTCTATTTCCTTTCCCTTGTCACGGTGAAGCAATCTTTTCCATC
ACATTCTGTTCCTTTGTCAAACCATGTACAGGCAGGGGAGGTGCCGGGCG
AGGACGCGGGCGATTGGGTGGGGGCCGGGGAGGACGAGGTAAGGGAACCG
AACGGAAGGGAGCAAAATGGATGTAGGGACAGAGAACGTGATAGAGACAG
ACACAACCCAGATCGCAATTTCACTTAAACCCGCGATCACACACACTGCT
TTGCTTATACCAACGAATCCCAAACAGGGTATGGTCGAGGTGGCGGGGAG
GGTCGTGGTGGCGCCCGGGGAGATTTTCGCGGCGGGCGTGGCGGGGGTGA
CCGAGGGGGACGAGGG
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Coding sequence (CDS) from alignment at scaffold_17:365359..366674+

>mRNA_6892 ID=mRNA_6892|Name=jgi.p|Nanoce1779_2|596686|organism=Nannochloropsis oceanica|type=CDS|length=1428bp|location=Sequence derived from alignment at scaffold_17:365359..366674+ (Nannochloropsis oceanica)
ATGTTGCCCTTGTCCCTCCTCAAGACGGCGCAAGGCCACCCAATGTTGGT
GGAGCTTAAAAATGGCGACACTTACAATGGCCGGCTAGTATCGTGTGATA
CCTGGATGAACATCACGTTGAGGGACGTCATCTGCACGTCACGGGATGGT
GACCGCTTCTGGAAGATCCCCGAGTGCTACGTGCGTGGGAACAGCATCAA
GTACCTGCGGGTGCCGGAGGAAGTGATCGACATGGTCAACGAGGAGGACT
TGGAAAGGGAACGCAGGGGAGGTGCCGGGCGAGGACGCGGGCGATTGGGT
GGGGGCCGGGGAGGACGAGGTAAGGGAACCGAACGGAAGGGAGCAAAATG
GATGTAGATGTTGCCCTTGTCCCTCCTCAAGACGGCGCAAGGCCACCCAA
TGTTGGTGGAGCTTAAAAATGGCGACACTTACAATGGCCGGCTAGTATCG
TGTGATACCTGGATGAACATCACGTTGAGGGACGTCATCTGCACGTCACG
GGATGGTGACCGCTTCTGGAAGATCCCCGAGTGCTACGTGCGTGGGAACA
GCATCAAGTACCTGCGGGTGCCGGAGGAAGTGATCGACATGGTCAACGAG
GAGGACTTGGAAAGGGAACGCAGGGGAGGTGCCGGGCGAGGACGCGGGCG
ATTGGGTGGGGGCCGGGGAGGACGAGGTAAGGGAACCGAACGGAAGGGAG
CAAAATGGATGTAGATGTTGCCCTTGTCCCTCCTCAAGACGGCGCAAGGC
CACCCAATGTTGGTGGAGCTTAAAAATGGCGACACTTACAATGGCCGGCT
AGTATCGTGTGATACCTGGATGAACATCACGTTGAGGGACGTCATCTGCA
CGTCACGGGATGGTGACCGCTTCTGGAAGATCCCCGAGTGCTACGTGCGT
GGGAACAGCATCAAGTACCTGCGGGTGCCGGAGGAAGTGATCGACATGGT
CAACGAGGAGGACTTGGAAAGGGAACGCAGGGGAGGTGCCGGGCGAGGAC
GCGGGCGATTGGGTGGGGGCCGGGGAGGACGAGGTAAGGGAACCGAACGG
AAGGGAGCAAAATGGATGTAGATGTTGCCCTTGTCCCTCCTCAAGACGGC
GCAAGGCCACCCAATGTTGGTGGAGCTTAAAAATGGCGACACTTACAATG
GCCGGCTAGTATCGTGTGATACCTGGATGAACATCACGTTGAGGGACGTC
ATCTGCACGTCACGGGATGGTGACCGCTTCTGGAAGATCCCCGAGTGCTA
CGTGCGTGGGAACAGCATCAAGTACCTGCGGGTGCCGGAGGAAGTGATCG
ACATGGTCAACGAGGAGGACTTGGAAAGGGAACGCAGGGGAGGTGCCGGG
CGAGGACGCGGGCGATTGGGTGGGGGCCGGGGAGGACGAGGTAAGGGAAC
CGAACGGAAGGGAGCAAAATGGATGTAG
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Synonyms
Publications