jgi.p|Nanoce1779_2|573809, mRNA_689 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|573809
Unique NamemRNA_689
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length722
Alignment locationscaffold_2:201367..202088 +

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Properties
Property NameValue
TranscriptId573895
TrackFilteredModels2
ProteinId573809
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:201367..202088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573809gene_689Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|573809mRNA_689-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_689CDS_689Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_689 ID=mRNA_689|Name=jgi.p|Nanoce1779_2|573809|organism=Nannochloropsis oceanica|type=mRNA|length=722bp
AAGTGTACGAGTAACTTTTTATTTTGAGTGAGACACCGTGGTCATTGTCA
TTGCAGGTGGTGCAGTTTTCTTATTGCCCCCTCTAAGTCTTAGGTGATGC
CAAGCGAGGAGATAAAGCGAAAGAAACACAGACAGGCCTCGGTCAGTGCC
CGCGGTCCAATGGTTTCCCCGTTCTCTGGGCTTTTCCATCCTTTTCTCAC
CGCCCCTCCCTCTTTCTCTTCCTCCCATCACTCACTCTCTCATAATCCTT
TCCTGCTCTTTTTCACTTTCCTTCGTTTTCATTGCTCCCTTATCTGTCTC
ACGCCGAAATCGCCACAAAAATGTTACCTTTCTATTATTTTGCCCTAATC
TCATGTCAAAAACCTTTCCGTCACGTTCTGTTTGTCTCGGCTTCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCTCTATAGTCC
CTTTCTCTTTGATTTCTTCCATATCTTTCGTATATAATTGTGTGGTTTCC
CTTCTGATATCCGCCTGCATCTACTTCTGCGCGTTCCTACCTTTACTTTG
CAAAAATGTGTTATCGCAATTCAAACAAACTCAAAAAAGTCAAATCCCAC
ACTCCATCCGTCCCATCCGTCCCTCCCTTCGCCTATAGTAAAGCTTTAGT
CTTCTTGCCCATAATGTGTCGCAAACCCCTCAAGACTCTTCCTCCACCCG
TCCCTCCCTCCCTCCCCCCCCC
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protein sequence of jgi.p|Nanoce1779_2|573809

>mRNA_689-protein ID=mRNA_689-protein|Name=jgi.p|Nanoce1779_2|573809|organism=Nannochloropsis oceanica|type=polypeptide|length=106bp
MLPFYYFALISCQKPFRHVLFVSASAAAAAAAAAAAAAAASIVPFSLISS
ISFVYNCVVSLLISACIYFCAFLPLLCKNVLSQFKQTQKSQIPHSIRPIR
PSLRL*
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mRNA from alignment at scaffold_2:201367..202088+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_689 ID=mRNA_689|Name=jgi.p|Nanoce1779_2|573809|organism=Nannochloropsis oceanica|type=mRNA|length=722bp|location=Sequence derived from alignment at scaffold_2:201367..202088+ (Nannochloropsis oceanica)
AAGTGTACGAGTAACTTTTTATTTTGAGTGAGACACCGTGGTCATTGTCA
TTGCAGGTGGTGCAGTTTTCTTATTGCCCCCTCTAAGTCTTAGGTGATGC
CAAGCGAGGAGATAAAGCGAAAGAAACACAGACAGGCCTCGGTCAGTGCC
CGCGGTCCAATGGTTTCCCCGTTCTCTGGGCTTTTCCATCCTTTTCTCAC
CGCCCCTCCCTCTTTCTCTTCCTCCCATCACTCACTCTCTCATAATCCTT
TCCTGCTCTTTTTCACTTTCCTTCGTTTTCATTGCTCCCTTATCTGTCTC
ACGCCGAAATCGCCACAAAAATGTTACCTTTCTATTATTTTGCCCTAATC
TCATGTCAAAAACCTTTCCGTCACGTTCTGTTTGTCTCGGCTTCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCTCTATAGTCC
CTTTCTCTTTGATTTCTTCCATATCTTTCGTATATAATTGTGTGGTTTCC
CTTCTGATATCCGCCTGCATCTACTTCTGCGCGTTCCTACCTTTACTTTG
CAAAAATGTGTTATCGCAATTCAAACAAACTCAAAAAAGTCAAATCCCAC
ACTCCATCCGTCCCATCCGTCCCTCCCTTCGCCTATAGTAAAGCTTTAGT
CTTCTTGCCCATAATGTGTCGCAAACCCCTCAAGACTCTTCCTCCACCCG
TCCCTCCCTCCCTCCCCCCCCC
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Coding sequence (CDS) from alignment at scaffold_2:201367..202088+

>mRNA_689 ID=mRNA_689|Name=jgi.p|Nanoce1779_2|573809|organism=Nannochloropsis oceanica|type=CDS|length=318bp|location=Sequence derived from alignment at scaffold_2:201367..202088+ (Nannochloropsis oceanica)
ATGTTACCTTTCTATTATTTTGCCCTAATCTCATGTCAAAAACCTTTCCG
TCACGTTCTGTTTGTCTCGGCTTCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCCTCTATAGTCCCTTTCTCTTTGATTTCTTCC
ATATCTTTCGTATATAATTGTGTGGTTTCCCTTCTGATATCCGCCTGCAT
CTACTTCTGCGCGTTCCTACCTTTACTTTGCAAAAATGTGTTATCGCAAT
TCAAACAAACTCAAAAAAGTCAAATCCCACACTCCATCCGTCCCATCCGT
CCCTCCCTTCGCCTATAG
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Synonyms
Publications