jgi.p|Nanoce1779_2|530922, mRNA_6889 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|530922
Unique NamemRNA_6889
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1497
Alignment locationscaffold_17:355921..357417 -

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Properties
Property NameValue
TranscriptId531008
TrackFilteredModels2
ProteinId530922
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:355921..357417 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|530922gene_6889Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6889CDS_6889Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|530922mRNA_6889-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6889 ID=mRNA_6889|Name=jgi.p|Nanoce1779_2|530922|organism=Nannochloropsis oceanica|type=mRNA|length=1497bp
ATGGGCATAACCGGCTTTCATCTCTCCCGCCCGACCTCTCTCCAGCCCAC
CCGCCGTGGCTTTGCGGCCGTGCCGGAGTTCACCACCATTATGATGCCCT
CCTTGTCCCCCACCATGACCCATGGGACCATAAGTGAATGGACTAAGAAG
CCCGGGGACATTTGCGGGGCGGGGGATGTGCTGTGCGAGATCGAGACTGA
CAAGGCCGTGGTGTCTTACGATGTCCAAGATGAATTTGTCCTTGCCAAAA
TTCTCGAAGACGCCAAGGGCCGCGAAATCAAGGTCGGTGAACCCGTTGCT
ATCTCCGTGGAAGATCAAGCAGCTTATCAAGCCTTCGTCGAGGCCGACAA
AGCAGGGGAAATCGAAATGCCCATGCTCCCTTTTACTCCAGCACCGGGAA
CGGCACCAGCACCATCAGCTGTGGCCTCCTCCTCTCCTTCCCCTCCTCCT
CCTCCTTCGTCCCCATCACCTACTGCCCACCTGGGCGACTTCGCCCTTTC
TCCCGCTGCCCGCCACCTCATCCACTCCCAACACCTCACCCTCTCAACCG
ATGTGCGCGGCACGGGAAAAGGCGGTCGACTCACAAAAGGAGATGTGATT
CGTGCCATTTCCAACGGACAAGTAACTGCCACCCCTCCCTCTCCACCCGC
GCCTTCGGCATTCTCCGCAAAAGCAGCGCCCGCAGTGGCAGCGACAGCAC
CAGTAGCATCAGCAGCACCAGCAGCAACAATAGCACCAGCAGCTCTCCCC
CCTGTGCACATCTCTGAAATCCACGCGATGCCTGGTACCTTTGCCGACAG
CAAAAACTCTAACATGCGCAAGATTATCGCGCGGCGCCTGGCCGAGAGCA
AGGCTACTGTGCCCCATGTCTATGAGACGGTTGATTGCGAGATTGACACC
GTACTGACCTTCCGCAAGCGCTTGCAGAAAGAGTATGAAGTAAGTGTGTC
TGTTAATGACGTGATTATCCGCTCAGCTGCCTTGGCACTCCGGGACGTGC
CCGAAGCTAATGCCTTCTGGGACGGGAAACAAGGAACGGCAGTGCTGAAT
AAAGGAGTGGATATCTCTGTGGCGGTCGCGACCCCCACGGGGCTCATCAC
TCCGATCATCACCATGTCGGACCGACGAAGACTGACGGAGATAAGTGCGA
CTATGAAGGACTTGGCGGGAAGGGCTAGACAAGGGAAGCTTAAGCCGGAG
GAGTTTCAGGGAGGGTCTTTCACGATTTCGAACTTAGGGATGTTTGGGAT
TGATGAGTTTTCGGCAGTGATTAACCCGCCACAGGCCGCCATTATGGCGG
TGGGGCGGGGGGCGAAGAGGGTGAGGGCGCCTGAGTTTGTGATGGGGCAG
GATGTAGGGAGTTTGAAGCCGTATAGTGCGACGGTGATGACGGCTACCTT
ATCGTTTGATCGGAGGGTGTTGGATGAAGCGTTGGCAGCGCAATTTTTGC
AGGCATTTAAGAGTTATATGTCTAGGCCGGAATTGCTCTTGCTGTAG
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protein sequence of jgi.p|Nanoce1779_2|530922

>mRNA_6889-protein ID=mRNA_6889-protein|Name=jgi.p|Nanoce1779_2|530922|organism=Nannochloropsis oceanica|type=polypeptide|length=499bp
MGITGFHLSRPTSLQPTRRGFAAVPEFTTIMMPSLSPTMTHGTISEWTKK
PGDICGAGDVLCEIETDKAVVSYDVQDEFVLAKILEDAKGREIKVGEPVA
ISVEDQAAYQAFVEADKAGEIEMPMLPFTPAPGTAPAPSAVASSSPSPPP
PPSSPSPTAHLGDFALSPAARHLIHSQHLTLSTDVRGTGKGGRLTKGDVI
RAISNGQVTATPPSPPAPSAFSAKAAPAVAATAPVASAAPAATIAPAALP
PVHISEIHAMPGTFADSKNSNMRKIIARRLAESKATVPHVYETVDCEIDT
VLTFRKRLQKEYEVSVSVNDVIIRSAALALRDVPEANAFWDGKQGTAVLN
KGVDISVAVATPTGLITPIITMSDRRRLTEISATMKDLAGRARQGKLKPE
EFQGGSFTISNLGMFGIDEFSAVINPPQAAIMAVGRGAKRVRAPEFVMGQ
DVGSLKPYSATVMTATLSFDRRVLDEALAAQFLQAFKSYMSRPELLLL*
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mRNA from alignment at scaffold_17:355921..357417-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6889 ID=mRNA_6889|Name=jgi.p|Nanoce1779_2|530922|organism=Nannochloropsis oceanica|type=mRNA|length=1497bp|location=Sequence derived from alignment at scaffold_17:355921..357417- (Nannochloropsis oceanica)
ATGGGCATAACCGGCTTTCATCTCTCCCGCCCGACCTCTCTCCAGCCCAC
CCGCCGTGGCTTTGCGGCCGTGCCGGAGTTCACCACCATTATGATGCCCT
CCTTGTCCCCCACCATGACCCATGGGACCATAAGTGAATGGACTAAGAAG
CCCGGGGACATTTGCGGGGCGGGGGATGTGCTGTGCGAGATCGAGACTGA
CAAGGCCGTGGTGTCTTACGATGTCCAAGATGAATTTGTCCTTGCCAAAA
TTCTCGAAGACGCCAAGGGCCGCGAAATCAAGGTCGGTGAACCCGTTGCT
ATCTCCGTGGAAGATCAAGCAGCTTATCAAGCCTTCGTCGAGGCCGACAA
AGCAGGGGAAATCGAAATGCCCATGCTCCCTTTTACTCCAGCACCGGGAA
CGGCACCAGCACCATCAGCTGTGGCCTCCTCCTCTCCTTCCCCTCCTCCT
CCTCCTTCGTCCCCATCACCTACTGCCCACCTGGGCGACTTCGCCCTTTC
TCCCGCTGCCCGCCACCTCATCCACTCCCAACACCTCACCCTCTCAACCG
ATGTGCGCGGCACGGGAAAAGGCGGTCGACTCACAAAAGGAGATGTGATT
CGTGCCATTTCCAACGGACAAGTAACTGCCACCCCTCCCTCTCCACCCGC
GCCTTCGGCATTCTCCGCAAAAGCAGCGCCCGCAGTGGCAGCGACAGCAC
CAGTAGCATCAGCAGCACCAGCAGCAACAATAGCACCAGCAGCTCTCCCC
CCTGTGCACATCTCTGAAATCCACGCGATGCCTGGTACCTTTGCCGACAG
CAAAAACTCTAACATGCGCAAGATTATCGCGCGGCGCCTGGCCGAGAGCA
AGGCTACTGTGCCCCATGTCTATGAGACGGTTGATTGCGAGATTGACACC
GTACTGACCTTCCGCAAGCGCTTGCAGAAAGAGTATGAAGTAAGTGTGTC
TGTTAATGACGTGATTATCCGCTCAGCTGCCTTGGCACTCCGGGACGTGC
CCGAAGCTAATGCCTTCTGGGACGGGAAACAAGGAACGGCAGTGCTGAAT
AAAGGAGTGGATATCTCTGTGGCGGTCGCGACCCCCACGGGGCTCATCAC
TCCGATCATCACCATGTCGGACCGACGAAGACTGACGGAGATAAGTGCGA
CTATGAAGGACTTGGCGGGAAGGGCTAGACAAGGGAAGCTTAAGCCGGAG
GAGTTTCAGGGAGGGTCTTTCACGATTTCGAACTTAGGGATGTTTGGGAT
TGATGAGTTTTCGGCAGTGATTAACCCGCCACAGGCCGCCATTATGGCGG
TGGGGCGGGGGGCGAAGAGGGTGAGGGCGCCTGAGTTTGTGATGGGGCAG
GATGTAGGGAGTTTGAAGCCGTATAGTGCGACGGTGATGACGGCTACCTT
ATCGTTTGATCGGAGGGTGTTGGATGAAGCGTTGGCAGCGCAATTTTTGC
AGGCATTTAAGAGTTATATGTCTAGGCCGGAATTGCTCTTGCTGTAG
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Coding sequence (CDS) from alignment at scaffold_17:355921..357417-

>mRNA_6889 ID=mRNA_6889|Name=jgi.p|Nanoce1779_2|530922|organism=Nannochloropsis oceanica|type=CDS|length=1497bp|location=Sequence derived from alignment at scaffold_17:355921..357417- (Nannochloropsis oceanica)
ATGGGCATAACCGGCTTTCATCTCTCCCGCCCGACCTCTCTCCAGCCCAC
CCGCCGTGGCTTTGCGGCCGTGCCGGAGTTCACCACCATTATGATGCCCT
CCTTGTCCCCCACCATGACCCATGGGACCATAAGTGAATGGACTAAGAAG
CCCGGGGACATTTGCGGGGCGGGGGATGTGCTGTGCGAGATCGAGACTGA
CAAGGCCGTGGTGTCTTACGATGTCCAAGATGAATTTGTCCTTGCCAAAA
TTCTCGAAGACGCCAAGGGCCGCGAAATCAAGGTCGGTGAACCCGTTGCT
ATCTCCGTGGAAGATCAAGCAGCTTATCAAGCCTTCGTCGAGGCCGACAA
AGCAGGGGAAATCGAAATGCCCATGCTCCCTTTTACTCCAGCACCGGGAA
CGGCACCAGCACCATCAGCTGTGGCCTCCTCCTCTCCTTCCCCTCCTCCT
CCTCCTTCGTCCCCATCACCTACTGCCCACCTGGGCGACTTCGCCCTTTC
TCCCGCTGCCCGCCACCTCATCCACTCCCAACACCTCACCCTCTCAACCG
ATGTGCGCGGCACGGGAAAAGGCGGTCGACTCACAAAAGGAGATGTGATT
CGTGCCATTTCCAACGGACAAGTAACTGCCACCCCTCCCTCTCCACCCGC
GCCTTCGGCATTCTCCGCAAAAGCAGCGCCCGCAGTGGCAGCGACAGCAC
CAGTAGCATCAGCAGCACCAGCAGCAACAATAGCACCAGCAGCTCTCCCC
CCTGTGCACATCTCTGAAATCCACGCGATGCCTGGTACCTTTGCCGACAG
CAAAAACTCTAACATGCGCAAGATTATCGCGCGGCGCCTGGCCGAGAGCA
AGGCTACTGTGCCCCATGTCTATGAGACGGTTGATTGCGAGATTGACACC
GTACTGACCTTCCGCAAGCGCTTGCAGAAAGAGTATGAAGTAAGTGTGTC
TGTTAATGACGTGATTATCCGCTCAGCTGCCTTGGCACTCCGGGACGTGC
CCGAAGCTAATGCCTTCTGGGACGGGAAACAAGGAACGGCAGTGCTGAAT
AAAGGAGTGGATATCTCTGTGGCGGTCGCGACCCCCACGGGGCTCATCAC
TCCGATCATCACCATGTCGGACCGACGAAGACTGACGGAGATAAGTGCGA
CTATGAAGGACTTGGCGGGAAGGGCTAGACAAGGGAAGCTTAAGCCGGAG
GAGTTTCAGGGAGGGTCTTTCACGATTTCGAACTTAGGGATGTTTGGGAT
TGATGAGTTTTCGGCAGTGATTAACCCGCCACAGGCCGCCATTATGGCGG
TGGGGCGGGGGGCGAAGAGGGTGAGGGCGCCTGAGTTTGTGATGGGGCAG
GATGTAGGGAGTTTGAAGCCGTATAGTGCGACGGTGATGACGGCTACCTT
ATCGTTTGATCGGAGGGTGTTGGATGAAGCGTTGGCAGCGCAATTTTTGC
AGGCATTTAAGAGTTATATGTCTAGGCCGGAATTGCTCTTGCTGTAG
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Synonyms
Publications