jgi.p|Nanoce1779_2|596659, mRNA_6887 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596659
Unique NamemRNA_6887
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length729
Alignment locationscaffold_17:351166..352462 +

Link to JBrowse

Properties
Property NameValue
TranscriptId596745
TrackFilteredModels2
ProteinId596659
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:351166..352462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596659gene_6887Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596659mRNA_6887-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6887CDS_6887Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6887 ID=mRNA_6887|Name=jgi.p|Nanoce1779_2|596659|organism=Nannochloropsis oceanica|type=mRNA|length=729bp
AAATCAACAGAGACAGAGGAAATGGCCCGATTACTTGCGTTGCTGGCCCT
GGCGGGCGCGGCTTGCGTCTCGGCCTTTGTGCCCATGCTCCCCCATTCTA
CCGGCTTGCAACATCGGCAAGCCCGGCCACTGGCAGCGCCCCTGCAAATG
GCCAAACACGCGCAGTTTAAAATTATCAAAAAGAAGATGCACAAGCGACC
CAAGAAGAGCAACCCCTCCGACCGGAACCGCGGCGGCCACTCCACGCACG
CCGTCGACAACCGCGACATGAGCGGCCCGGGATGGCTTTTCCCTGACCAA
GAAGGGTGGGTGGCGTATGATGAGGCTGTGCACGGAGAATTGGACGAGGA
GATAAAGGAACTGACGGAGGGCCTGGACCCGATTTGGGTGCGTATTGTCG
ACCCTAAGACGGGGGAACCCAAGTTGGAGAGCTCGTAATGAGGGAGAAAT
GATGGCGGGTATAAGACGGAGGTTACTCTATATACATACACACGGAAGAA
GCGGAGATTTGCGGGAGGAGGAGGATGAAGGGGGATGAGGGGCAGGGCAG
GTGGTTTGCATGCCAGCCGAGGGGAGAATGACGTGTGTTTAGGGTCCAAC
AAGGCGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGCGTGTGTTTTATCG
ATCACACTTGTGGGAGAAGGAGAAAACTTTTCGGTTGACTCGTCTTTACA
GCTAGTTAACACGCGCATGTGCGTTCCAC
back to top

protein sequence of jgi.p|Nanoce1779_2|596659

>mRNA_6887-protein ID=mRNA_6887-protein|Name=jgi.p|Nanoce1779_2|596659|organism=Nannochloropsis oceanica|type=polypeptide|length=139bp
MARLLALLALAGAACVSAFVPMLPHSTGLQHRQARPLAAPLQMAKHAQFK
IIKKKMHKRPKKSNPSDRNRGGHSTHAVDNRDMSGPGWLFPDQEGWVAYD
EAVHGELDEEIKELTEGLDPIWVRIVDPKTGEPKLESS*
back to top

mRNA from alignment at scaffold_17:351166..352462+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6887 ID=mRNA_6887|Name=jgi.p|Nanoce1779_2|596659|organism=Nannochloropsis oceanica|type=mRNA|length=1297bp|location=Sequence derived from alignment at scaffold_17:351166..352462+ (Nannochloropsis oceanica)
AAATCAACAGAGACAGAGGAAATGGCCCGATTACTTGCGTTGCTGGCCCT
GGCGGGCGCGGCTTGCGTCTCGGCCTTTGTGCCCATGCTCCCCCATTCTA
CCGGCTTGCAACATCGGCAAGGTGAGTGTCTGCGTTGTCAAGCGAGGAGG
AGGGCAACACAAAGGCGGAGGGATAGGAAGATTCTTAAGAGGAAGATAAA
ACGAGGGCATGAGTATTTCCAGGCCTTGGATGGCAGAGCTGGGCGTGGTG
GTGCGCTGGTATGGCGTTGCGGTCTGTGCAATCAGCAGAAGGCGTTGCCT
TCATCGGGTTTGGGATGAGTTAACCAAAGACTTCGGTAGCCAAGCAGCAT
ACCTTGCCGCAAACGCAACGCGAAGCAGGAACGAAGGGCGATGTTTTTTT
GGGTACCACCAATCGCAAGTTGCAAGCATCTCACCGCTCCCTCCCCCCTT
CCCTTCCCTTTCTCCTCTGTCCTTTTAACTCCCTCTCTCAGCCCGGCCAC
TGGCAGCGCCCCTGCAAATGGCCAAACACGCGCAGTTTAAAATTATCAAA
AAGAAGATGCACAAGCGACCCAAGAAGGTGGGTCTGCTGCCTCGTAACTT
TTTCCATTCCTTCCTCCCTCCCATTTCTTTTCCCATAATTGGTTGAAGCC
TTCTTTGTCCTGCCTGCCATGTTACTAGCCGGCGTGTTATGTATGCTCCC
AGCGAGACATTAGGTAACCGTCCCTCTCTCCTCATATTTTGTCTTCTCTC
GCTCCCCTTTCCCATCCACCCACAGAGCAACCCCTCCGACCGGAACCGCG
GCGGCCACTCCACGCACGCCGTCGACAACCGCGACATGAGCGGCCCGGGA
TGGCTTTTCCCTGACCAAGAAGGGTGGGTGGCGTATGATGAGGCTGTGCA
CGGAGAATTGGACGAGGAGATAAAGGAACTGACGGAGGGCCTGGACCCGA
TTTGGGTGCGTATTGTCGACCCTAAGACGGGGGAACCCAAGTTGGAGAGC
TCGTAATGAGGGAGAAATGATGGCGGGTATAAGACGGAGGTTACTCTATA
TACATACACACGGAAGAAGCGGAGATTTGCGGGAGGAGGAGGATGAAGGG
GGATGAGGGGCAGGGCAGGTGGTTTGCATGCCAGCCGAGGGGAGAATGAC
GTGTGTTTAGGGTCCAACAAGGCGTGTGTGTGTGTGTGTGTGTGTGTTTG
TGTGCGTGTGTTTTATCGATCACACTTGTGGGAGAAGGAGAAAACTTTTC
GGTTGACTCGTCTTTACAGCTAGTTAACACGCGCATGTGCGTTCCAC
back to top

Coding sequence (CDS) from alignment at scaffold_17:351166..352462+

>mRNA_6887 ID=mRNA_6887|Name=jgi.p|Nanoce1779_2|596659|organism=Nannochloropsis oceanica|type=CDS|length=1251bp|location=Sequence derived from alignment at scaffold_17:351166..352462+ (Nannochloropsis oceanica)
ATGGCCCGATTACTTGCGTTGCTGGCCCTGGCGGGCGCGGCTTGCGTCTC
GGCCTTTGTGCCCATGCTCCCCCATTCTACCGGCTTGCAACATCGGCAAG
CCCGGCCACTGGCAGCGCCCCTGCAAATGGCCAAACACGCGCAGTTTAAA
ATTATCAAAAAGAAGATGCACAAGCGACCCAAGAAGAGCAACCCCTCCGA
CCGGAACCGCGGCGGCCACTCCACGCACGCCGTCGACAACCGCGACATGA
GCGGCCCGGGATGGCTTTTCCCTGACCAAGAAGGGTGGGTGGCGTATGAT
GAGGCTGTGCACGGAGAATTGGACGAGGAGATAAAGGAACTGACGGAGGG
CCTGGACCCGATTTGGGTGCGTATTGTCGACCCTAAGACGGGGGAACCCA
AGTTGGAGAGCTCGTAAATGGCCCGATTACTTGCGTTGCTGGCCCTGGCG
GGCGCGGCTTGCGTCTCGGCCTTTGTGCCCATGCTCCCCCATTCTACCGG
CTTGCAACATCGGCAAGCCCGGCCACTGGCAGCGCCCCTGCAAATGGCCA
AACACGCGCAGTTTAAAATTATCAAAAAGAAGATGCACAAGCGACCCAAG
AAGAGCAACCCCTCCGACCGGAACCGCGGCGGCCACTCCACGCACGCCGT
CGACAACCGCGACATGAGCGGCCCGGGATGGCTTTTCCCTGACCAAGAAG
GGTGGGTGGCGTATGATGAGGCTGTGCACGGAGAATTGGACGAGGAGATA
AAGGAACTGACGGAGGGCCTGGACCCGATTTGGGTGCGTATTGTCGACCC
TAAGACGGGGGAACCCAAGTTGGAGAGCTCGTAAATGGCCCGATTACTTG
CGTTGCTGGCCCTGGCGGGCGCGGCTTGCGTCTCGGCCTTTGTGCCCATG
CTCCCCCATTCTACCGGCTTGCAACATCGGCAAGCCCGGCCACTGGCAGC
GCCCCTGCAAATGGCCAAACACGCGCAGTTTAAAATTATCAAAAAGAAGA
TGCACAAGCGACCCAAGAAGAGCAACCCCTCCGACCGGAACCGCGGCGGC
CACTCCACGCACGCCGTCGACAACCGCGACATGAGCGGCCCGGGATGGCT
TTTCCCTGACCAAGAAGGGTGGGTGGCGTATGATGAGGCTGTGCACGGAG
AATTGGACGAGGAGATAAAGGAACTGACGGAGGGCCTGGACCCGATTTGG
GTGCGTATTGTCGACCCTAAGACGGGGGAACCCAAGTTGGAGAGCTCGTA
A
back to top
Synonyms
Publications