jgi.p|Nanoce1779_2|651083, mRNA_6886 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|651083
Unique NamemRNA_6886
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length859
Alignment locationscaffold_17:350298..351156 -

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Properties
Property NameValue
TranscriptId651169
TrackFilteredModels2
ProteinId651083
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:350298..351156 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|651083gene_6886Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6886CDS_6886Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|651083mRNA_6886-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6886 ID=mRNA_6886|Name=jgi.p|Nanoce1779_2|651083|organism=Nannochloropsis oceanica|type=mRNA|length=859bp
AGTGGGCGCGGATGAGTGAGAGCTTCGCATATGCAGGTCGCGGATGACCT
GAGGCGAGGTGAAGTGGATCGATCGATGCAGAGGTATGTCAACTCTGCTT
TCGGGAGTCCGCAGAAAGTCATCAAGCCGTAGAAGCAGCGACCATTAATC
ATTAGTCAGCCCGTTCTTGTGACGAGGAAGGAAGCCGAGGATTCATGCTG
CTGTTTGTAAAGGCAGTGAGCTTGGACCGTGTGCAGTATCCGCGAGCTGT
GATGTTATGCCGGGTGGGGTGGGTGGCTCTCGAGAGAGGGCCACGTGAGC
GCCTTTGCCTCGTCTTCCCGCACCTTGGTCGTCAGTACAGGGAAAGGAAG
GTATGCCCAGACACATACAGGGGCCTTGGAATGAAGGAAAAAGGAAAAGC
GAGGCACCCACCACGCCACTGGCCCCGATGTTGCCGTGCAAGGAGGGAAA
GGCGAGCAGAGGGTCTGCGGCACAGACTCCGAAATCGTCTTTGCAGCACG
ACTGTGTTCTTCAGTTTGGTTGTCGTTTCTCAACACAAACAACATACTCA
CAAATGCACACCTACGGCCACATACCCTGGCACAAGACGGTACAACCTCG
GGATCGTGTCCATAACGCCCAAGCTGGCTTGCTTTTTGTTGCCCACTCAC
GGCGCGCTCCTTGCTTGCTTCCAGCCTCCCCCCCATGTATCACATCTCCC
GCTACGCTCCAAAAGCACATCAAAACAACCACCATACCACACCGCCCGCA
TACGCAGACACTCGTGCATGCTGACGGCACTCCGAAGACTCTCCTCCCTC
CTCTACATCTGCCCGTCGCCCTTTATGGAGCTTTCCCTTGCCCTTTTCCT
CATCCCTCC
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protein sequence of jgi.p|Nanoce1779_2|651083

>mRNA_6886-protein ID=mRNA_6886-protein|Name=jgi.p|Nanoce1779_2|651083|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MLLFVKAVSLDRVQYPRAVMLCRVGWVALERGPRERLCLVFPHLGRQYRE
RKVCPDTYRGLGMKEKGKARHPPRHWPRCCRARRERRAEGLRHRLRNRLC
STTVFFSLVVVSQHKQHTHKCTPTATYPGTRRYNLGIVSITPKLACFLLP
THGALLACFQPPPHVSHLPLRSKSTSKQPPYHTARIRRHSCMLTALRRLS
SLLYICPSPFMELSLALFLIP
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mRNA from alignment at scaffold_17:350298..351156-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6886 ID=mRNA_6886|Name=jgi.p|Nanoce1779_2|651083|organism=Nannochloropsis oceanica|type=mRNA|length=859bp|location=Sequence derived from alignment at scaffold_17:350298..351156- (Nannochloropsis oceanica)
AGTGGGCGCGGATGAGTGAGAGCTTCGCATATGCAGGTCGCGGATGACCT
GAGGCGAGGTGAAGTGGATCGATCGATGCAGAGGTATGTCAACTCTGCTT
TCGGGAGTCCGCAGAAAGTCATCAAGCCGTAGAAGCAGCGACCATTAATC
ATTAGTCAGCCCGTTCTTGTGACGAGGAAGGAAGCCGAGGATTCATGCTG
CTGTTTGTAAAGGCAGTGAGCTTGGACCGTGTGCAGTATCCGCGAGCTGT
GATGTTATGCCGGGTGGGGTGGGTGGCTCTCGAGAGAGGGCCACGTGAGC
GCCTTTGCCTCGTCTTCCCGCACCTTGGTCGTCAGTACAGGGAAAGGAAG
GTATGCCCAGACACATACAGGGGCCTTGGAATGAAGGAAAAAGGAAAAGC
GAGGCACCCACCACGCCACTGGCCCCGATGTTGCCGTGCAAGGAGGGAAA
GGCGAGCAGAGGGTCTGCGGCACAGACTCCGAAATCGTCTTTGCAGCACG
ACTGTGTTCTTCAGTTTGGTTGTCGTTTCTCAACACAAACAACATACTCA
CAAATGCACACCTACGGCCACATACCCTGGCACAAGACGGTACAACCTCG
GGATCGTGTCCATAACGCCCAAGCTGGCTTGCTTTTTGTTGCCCACTCAC
GGCGCGCTCCTTGCTTGCTTCCAGCCTCCCCCCCATGTATCACATCTCCC
GCTACGCTCCAAAAGCACATCAAAACAACCACCATACCACACCGCCCGCA
TACGCAGACACTCGTGCATGCTGACGGCACTCCGAAGACTCTCCTCCCTC
CTCTACATCTGCCCGTCGCCCTTTATGGAGCTTTCCCTTGCCCTTTTCCT
CATCCCTCC
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Coding sequence (CDS) from alignment at scaffold_17:350298..351156-

>mRNA_6886 ID=mRNA_6886|Name=jgi.p|Nanoce1779_2|651083|organism=Nannochloropsis oceanica|type=CDS|length=665bp|location=Sequence derived from alignment at scaffold_17:350298..351156- (Nannochloropsis oceanica)
ATGCTGCTGTTTGTAAAGGCAGTGAGCTTGGACCGTGTGCAGTATCCGCG
AGCTGTGATGTTATGCCGGGTGGGGTGGGTGGCTCTCGAGAGAGGGCCAC
GTGAGCGCCTTTGCCTCGTCTTCCCGCACCTTGGTCGTCAGTACAGGGAA
AGGAAGGTATGCCCAGACACATACAGGGGCCTTGGAATGAAGGAAAAAGG
AAAAGCGAGGCACCCACCACGCCACTGGCCCCGATGTTGCCGTGCAAGGA
GGGAAAGGCGAGCAGAGGGTCTGCGGCACAGACTCCGAAATCGTCTTTGC
AGCACGACTGTGTTCTTCAGTTTGGTTGTCGTTTCTCAACACAAACAACA
TACTCACAAATGCACACCTACGGCCACATACCCTGGCACAAGACGGTACA
ACCTCGGGATCGTGTCCATAACGCCCAAGCTGGCTTGCTTTTTGTTGCCC
ACTCACGGCGCGCTCCTTGCTTGCTTCCAGCCTCCCCCCCATGTATCACA
TCTCCCGCTACGCTCCAAAAGCACATCAAAACAACCACCATACCACACCG
CCCGCATACGCAGACACTCGTGCATGCTGACGGCACTCCGAAGACTCTCC
TCCCTCCTCTACATCTGCCCGTCGCCCTTTATGGAGCTTTCCCTTGCCCT
TTTCCTCATCCCTCC
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Synonyms
Publications