jgi.p|Nanoce1779_2|631854, mRNA_6885 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|631854
Unique Name	mRNA_6885
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1930
Alignment location	scaffold_17:348476..350671 -

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Properties


Property Name	Value
TranscriptId	631940
Track	FilteredModels2
ProteinId	631854

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:348476..350671 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|631854	gene_6885	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|631854	mRNA_6885-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6885	CDS_6885	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:348476..350671-
coding sequence from alignment at scaffold_17:348476..350671-

mRNA sequence

>mRNA_6885 ID=mRNA_6885|Name=jgi.p|Nanoce1779_2|631854|organism=Nannochloropsis oceanica|type=mRNA|length=1930bp
CGTCTTTGCAGCACGACTGTGTTCTTCAGTTTGGTTGTCGTTTCTCAACA
CAAACAACATACTCACAAATGCACACCTACGGCCACATACCCTGGCACAA
GACGGTACAACCTCGGGATCGTGTCCATAACGCCCAAGCTGGCTTGCTTT
TTGTTGCCCACTCACGGCGCGCTCCTTGCTTGCTTCCAGCCTCCCCCCCA
TGTATCACATCTCCCGCTACGCTCCAAAAGCACATCAAAACAACCACCAT
ACCACACCGCCCGCATACGCAGACACTCGTGCATGCTGACGGCACTCCGA
AGACTCTCCTCCCTCCTCTACATCTGCCCGTCGCCCTTTATGGAGCTTTC
CCTTGCCCTTTTCCTCATCCCTCCACCTCCCTCTCCCCCCCAACATGTGC
ATTAGACCTCGGCCCAATCTATCGTCACACTCCGTCCGCTTTCGTCTCTG
ACCACCCTCCAACTCGACTTTCTTGCTCTGGTGCCATTACTTCGCCACCA
TGGCCCCAAAAAAATCTCAAGAAGAAAAAGACACAGCCGTCACTGCTCTC
CGGGCCAGCGAACTCCGCATCGGCCACGTTCTAACCCGCAAATCCATCAC
CACCTCCATCCCCTCTTCCGTCCCCTCCTCCCTCCGGGCGAAAGACCTCA
AAAATTGGAACGGCTGTGACATCGTCCGCAAAGGTGGTCGCAAGACCCGG
TACGTTTTCCTCCTCCCTGCCTCCCTCTCCCTCACTCAAGCCGGAGGGAA
GGTAGGAACGCTGGCACAAATGGATACAGAGACACCTGTCCTCTACCTGG
ACTTCCCTCAAGGTCGAATGAGATGCCAAGGAAGAATCGTTAGGCCTGAA
GTACGGCTGTTGCCTTTGGCCTTCGAAGGAAAGCAAAGCGTGACGTGTAA
AGACATTGTGAATACCCTTGTTGTGTTCTCGGAGATAATGTGGGTGGGCA
CCGCGAAAGAAAACCCTGAAGAGAAACCTTGGCCCATGCCGGCAAGTTTG
AATTTTCAAATCGAGGGACTGACGGCGGAGGAGATGTATGTGAGGGGGGG
GAAGTGGGGAGGGAATGGAGGAAAAGACAAGGAAGGCGAGAAAGAGGATG
AGGAGAAAGAAGGTGAGGGACGGCGGCCGCGAAGGGCGGCGACTATGAGG
TCATCGGGAGGAGGTGGAGAGAGTGAGGATGAGGAAGAGGAGGGAGATTC
TTGGGATGAAGAGGGGAGGGAGGACGAGAGGGGGAAGGAGGAGGGAGAGG
GAGTGGAAAAGCAGGAGGAGGAGAAGTCGAAGGCCTCGCCGTTGAGAGGG
CATTTGAAGAGGCGGGCCGCGTCGACGGTTGTGTATGGGGGGATGGATGA
GGACTGGGAAGAGGAAAACGAGGTGGGGGAAGAGTTAGAGGAAGAGGAGG
AAGAGGACAATGTGCAGGAGGGGGAGGACCCGTGGGAGAGAATGCGGATT
TCGAGAAGGGATGATGAGAAGGAGAAAGGGGGAGGGGGAGGCGGTGGTGC
AGGGAAGAAAGCGGTGGTGAAGAAGGGCGTTGGCAGGAGTGATGCTGCTG
CTGCTATAGGGAAGAAGGCGAGGAAGAAGAAGAGTGAGGTTATAGACTTG
ATGGATGATGATGACGAGGAAAGCGATGAGGGAAACAACGAGGACGATGA
GGATGAATTTGTCTCTGGTGATAGCTTTGCGAAGAATAGGAACAAACGCA
AGGCGGTCACTTCTACCGGTTCTGCTGCCGCTGCCAAGAAGAAAGCTCGT
CCCTCCTGTGGTGGGAGTTCGACAAAAGGAGGGAAGAAAAAGACGGCAAT
AAAAATGGAATGAGACGATACAATACCGCGCCTGTATGCCAATGATGCCG
CACGGAAAAGAAATTCGAAACGTGAAACAAAGTACGAATGAATGTACAAA
GTCCGGATTGCTTGTTCAGGCATGTTTTGC

protein sequence of jgi.p|Nanoce1779_2|631854

>mRNA_6885-protein ID=mRNA_6885-protein|Name=jgi.p|Nanoce1779_2|631854|organism=Nannochloropsis oceanica|type=polypeptide|length=438bp
MAPKKSQEEKDTAVTALRASELRIGHVLTRKSITTSIPSSVPSSLRAKDL
KNWNGCDIVRKGGRKTRYVFLLPASLSLTQAGGKVGTLAQMDTETPVLYL
DFPQGRMRCQGRIVRPEVRLLPLAFEGKQSVTCKDIVNTLVVFSEIMWVG
TAKENPEEKPWPMPASLNFQIEGLTAEEMYVRGGKWGGNGGKDKEGEKED
EEKEGEGRRPRRAATMRSSGGGGESEDEEEEGDSWDEEGREDERGKEEGE
GVEKQEEEKSKASPLRGHLKRRAASTVVYGGMDEDWEEENEVGEELEEEE
EEDNVQEGEDPWERMRISRRDDEKEKGGGGGGGAGKKAVVKKGVGRSDAA
AAIGKKARKKKSEVIDLMDDDDEESDEGNNEDDEDEFVSGDSFAKNRNKR
KAVTSTGSAAAAKKKARPSCGGSSTKGGKKKTAIKME*

mRNA from alignment at scaffold_17:348476..350671-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6885 ID=mRNA_6885|Name=jgi.p|Nanoce1779_2|631854|organism=Nannochloropsis oceanica|type=mRNA|length=2196bp|location=Sequence derived from alignment at scaffold_17:348476..350671- (Nannochloropsis oceanica)
CGTCTTTGCAGCACGACTGTGTTCTTCAGTTTGGTTGTCGTTTCTCAACA
CAAACAACATACTCACAAATGCACACCTACGGCCACATACCCTGGCACAA
GACGGTACAACCTCGGGATCGTGTCCATAACGCCCAAGCTGGCTTGCTTT
TTGTTGCCCACTCACGGCGCGCTCCTTGCTTGCTTCCAGCCTCCCCCCCA
TGTATCACATCTCCCGCTACGCTCCAAAAGCACATCAAAACAACCACCAT
ACCACACCGCCCGCATACGCAGACACTCGTGCATGCTGACGGCACTCCGA
AGACTCTCCTCCCTCCTCTACATCTGCCCGTCGCCCTTTATGGAGCTTTC
CCTTGCCCTTTTCCTCATCCCTCCACCTCCCTCTCCCCCCCAACATGTGC
ATTAGACCTCGGCCCAATCTATCGTCACACTCCGTCCGCTTTCGTCTCTG
ACCACCCTCCAACTCGACTTTCTTGCTCTGGTGCCATTACTTCGCCACCA
TGGCCCCAAAAAAATCTCAAGAAGAAAAAGACACAGCCGTCACTGCTCTC
CGGGCCAGCGAACTCCGCATCGGCCACGTTCTAACCCGCAAATCCATCAC
CACCTCCATCCCCTCTTCCGTCCCCTCCTCCCTCCGGGCGAAAGACCTCA
AAAATTGGAACGGCTGTGACATCGTCCGCAAAGGTGGTCGCAAGACCCGG
TACGTTTTCCTCCTCCCTGCCTCCCTCTCCCTCACTCAAGCCGGAGGGAA
GGTAGGAACGCTGGCACAAATGGATACAGAGACACCTGTCCTCTACCTGG
ACTTCCCTCAAGGTCGAATGAGATGCCAAGGAAGAATCGTTAGGCCTGAA
GTACGGCTGTTGCCTTTGGCCTTCGAAGGAAAGCAAAGCGTGACGTGTAA
AGACATTGTGAATACCCTTGTTGTGTTCTCGGAGATAATGTGGGTGGGCA
CCGCGAAAGAAAACCCTGAAGAGAAACCTTGGCCCATGCCGGCAAGTTTG
AATTTTCAAATCGAGGGACTGACGGCGGAGGAGATGTATGTGAGGGGGGG
GAAGTGGGGAGGGAATGGAGGAAAAGACAAGGAAGGCGAGAAAGAGGATG
AGGAGAAAGAAGGTGAGGGACGGCGGCCGCGAAGGGCGGCGACTATGAGG
TCATCGGGAGGAGGTGGAGAGAGTGAGGATGAGGAAGAGGAGGGAGATTC
TTGGGATGAAGAGGGGAGGGAGGACGAGAGGGGGAAGGAGGAGGGAGAGG
GAGTGGAAAAGCAGGAGGAGGAGAAGTCGAAGGCCTCGCCGTTGAGAGGG
CATTTGAAGAGGCGGGCCGCGTCGACGGTTGTGTATGGGGGGATGGATGA
GGACTGGGAAGAGGAAAACGAGGTGGGGGAAGAGTTAGAGGAAGAGGAGG
AAGAGGACAATGTGCAGGAGGGGGAGGACCCGTGGGAGAGAATGCGGATT
TCGAGAAGGGATGATGAGAAGGAGAAAGGGGGAGGGGGAGGCGGTGGTGC
AGGGAAGAAAGCGGTGGTGAAGAAGGGCGTTGGCAGGAGTGATGCTGCTG
CTGCTATAGGGAAGAAGGCGAGGAAGAAGAAGAGTGAGGTTATAGACTTG
ATGGATGATGATGACGAGGAAAGCGATGAGGGAAACAACGAGGACGATGA
GGATGAATTTGTCTCTGGTGATAGCTTTGCGAAGAATAGGAACAAACGCA
AGGCGGTCACTTCTACCGGTTCTGCTGCCGCTGCCAAGAAGAAAGCTCGT
CCCTCCTGTGGTGGGAGTTCGACAAAAGGAGGGAAGAAAAAGACGGCAAT
AAAAATGGTGAAAATCGATGACTACGACGACAACAACGACGAGGAGGAGG
AAGAGGACGAGGACGAGGACGAGGACGAGGACGAGGATGAGGACGAGGAC
GAGGACGAGGGCGAGAGAAGAGGAGGGCGGCACAAGCGCAAGGTGGCAGT
GATAGCGGCCCGGAGGAAGAAGGTGGTGGATGTCGACAGTGATGTTGATG
AGGATGAGGAAGAGGACGAAGGGGAGGGGGTCGACGAGGACGACGACGAT
GATTCTGATTTTTCGGGTTAGAGGAATGAGACGATACAATACCGCGCCTG
TATGCCAATGATGCCGCACGGAAAAGAAATTCGAAACGTGAAACAAAGTA
CGAATGAATGTACAAAGTCCGGATTGCTTGTTCAGGCATGTTTTGC

Coding sequence (CDS) from alignment at scaffold_17:348476..350671-

>mRNA_6885 ID=mRNA_6885|Name=jgi.p|Nanoce1779_2|631854|organism=Nannochloropsis oceanica|type=CDS|length=2628bp|location=Sequence derived from alignment at scaffold_17:348476..350671- (Nannochloropsis oceanica)
GAATGAATGGCCCCAAAAAAATCTCAAGAAGAAAAAGACACAGCCGTCAC
TGCTCTCCGGGCCAGCGAACTCCGCATCGGCCACGTTCTAACCCGCAAAT
CCATCACCACCTCCATCCCCTCTTCCGTCCCCTCCTCCCTCCGGGCGAAA
GACCTCAAAAATTGGAACGGCTGTGACATCGTCCGCAAAGGTGGTCGCAA
GACCCGGTACGTTTTCCTCCTCCCTGCCTCCCTCTCCCTCACTCAAGCCG
GAGGGAAGGTAGGAACGCTGGCACAAATGGATACAGAGACACCTGTCCTC
TACCTGGACTTCCCTCAAGGTCGAATGAGATGCCAAGGAAGAATCGTTAG
GCCTGAAGTACGGCTGTTGCCTTTGGCCTTCGAAGGAAAGCAAAGCGTGA
CGTGTAAAGACATTGTGAATACCCTTGTTGTGTTCTCGGAGATAATGTGG
GTGGGCACCGCGAAAGAAAACCCTGAAGAGAAACCTTGGCCCATGCCGGC
AAGTTTGAATTTTCAAATCGAGGGACTGACGGCGGAGGAGATGTATGTGA
GGGGGGGGAAGTGGGGAGGGAATGGAGGAAAAGACAAGGAAGGCGAGAAA
GAGGATGAGGAGAAAGAAGGTGAGGGACGGCGGCCGCGAAGGGCGGCGAC
TATGAGGTCATCGGGAGGAGGTGGAGAGAGTGAGGATGAGGAAGAGGAGG
GAGATTCTTGGGATGAAGAGGGGAGGGAGGACGAGAGGGGGAAGGAGGAG
GGAGAGGGAGTGGAAAAGCAGGAGGAGGAGAAGTCGAAGGCCTCGCCGTT
GAGAGGGCATTTGAAGAGGCGGGCCGCGTCGACGGTTGTGTATGGGGGGA
TGGATGAGGACTGGGAAGAGGAAAACGAGGTGGGGGAAGAGTTAGAGGAA
GAGGAGGAAGAGGACAATGTGCAGGAGGGGGAGGACCCGTGGGAGAGAAT
GCGGATTTCGAGAAGGGATGATGAGAAGGAGAAAGGGGGAGGGGGAGGCG
GTGGTGCAGGGAAGAAAGCGGTGGTGAAGAAGGGCGTTGGCAGGAGTGAT
GCTGCTGCTGCTATAGGGAAGAAGGCGAGGAAGAAGAAGAGTGAGGTTAT
AGACTTGATGGATGATGATGACGAGGAAAGCGATGAGGGAAACAACGAGG
ACGATGAGGATGAATTTGTCTCTGGTGATAGCTTTGCGAAGAATAGGAAC
AAACGCAAGGCGGTCACTTCTACCGGTTCTGCTGCCGCTGCCAAGAAGAA
AGCTCGTCCCTCCTGTGGTGGGAGTTCGACAAAAGGAGGGAAGAAAAAGA
CGGCAATAAAAATGGAATGAATGGCCCCAAAAAAATCTCAAGAAGAAAAA
GACACAGCCGTCACTGCTCTCCGGGCCAGCGAACTCCGCATCGGCCACGT
TCTAACCCGCAAATCCATCACCACCTCCATCCCCTCTTCCGTCCCCTCCT
CCCTCCGGGCGAAAGACCTCAAAAATTGGAACGGCTGTGACATCGTCCGC
AAAGGTGGTCGCAAGACCCGGTACGTTTTCCTCCTCCCTGCCTCCCTCTC
CCTCACTCAAGCCGGAGGGAAGGTAGGAACGCTGGCACAAATGGATACAG
AGACACCTGTCCTCTACCTGGACTTCCCTCAAGGTCGAATGAGATGCCAA
GGAAGAATCGTTAGGCCTGAAGTACGGCTGTTGCCTTTGGCCTTCGAAGG
AAAGCAAAGCGTGACGTGTAAAGACATTGTGAATACCCTTGTTGTGTTCT
CGGAGATAATGTGGGTGGGCACCGCGAAAGAAAACCCTGAAGAGAAACCT
TGGCCCATGCCGGCAAGTTTGAATTTTCAAATCGAGGGACTGACGGCGGA
GGAGATGTATGTGAGGGGGGGGAAGTGGGGAGGGAATGGAGGAAAAGACA
AGGAAGGCGAGAAAGAGGATGAGGAGAAAGAAGGTGAGGGACGGCGGCCG
CGAAGGGCGGCGACTATGAGGTCATCGGGAGGAGGTGGAGAGAGTGAGGA
TGAGGAAGAGGAGGGAGATTCTTGGGATGAAGAGGGGAGGGAGGACGAGA
GGGGGAAGGAGGAGGGAGAGGGAGTGGAAAAGCAGGAGGAGGAGAAGTCG
AAGGCCTCGCCGTTGAGAGGGCATTTGAAGAGGCGGGCCGCGTCGACGGT
TGTGTATGGGGGGATGGATGAGGACTGGGAAGAGGAAAACGAGGTGGGGG
AAGAGTTAGAGGAAGAGGAGGAAGAGGACAATGTGCAGGAGGGGGAGGAC
CCGTGGGAGAGAATGCGGATTTCGAGAAGGGATGATGAGAAGGAGAAAGG
GGGAGGGGGAGGCGGTGGTGCAGGGAAGAAAGCGGTGGTGAAGAAGGGCG
TTGGCAGGAGTGATGCTGCTGCTGCTATAGGGAAGAAGGCGAGGAAGAAG
AAGAGTGAGGTTATAGACTTGATGGATGATGATGACGAGGAAAGCGATGA
GGGAAACAACGAGGACGATGAGGATGAATTTGTCTCTGGTGATAGCTTTG
CGAAGAATAGGAACAAACGCAAGGCGGTCACTTCTACCGGTTCTGCTGCC
GCTGCCAAGAAGAAAGCTCGTCCCTCCTGTGGTGGGAGTTCGACAAAAGG
AGGGAAGAAAAAGACGGCAATAAAAATG

Synonyms

Publications