jgi.p|Nanoce1779_2|115753, mRNA_6883 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|115753
Unique NamemRNA_6883
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1145
Alignment locationscaffold_17:343030..344174 +

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Properties
Property NameValue
TranscriptId115839
TrackFilteredModels2
ProteinId115753
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:343030..344174 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|115753gene_6883Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|115753mRNA_6883-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6883CDS_6883Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6883 ID=mRNA_6883|Name=jgi.p|Nanoce1779_2|115753|organism=Nannochloropsis oceanica|type=mRNA|length=1145bp
CAAAAACCAACGGTGGCGCGTTTACTTTCCTGGACGTGGCGGAACGCGGC
CGTGTTTTCTACCTTGTGTGGTTCGTGGCGGCCGACTCTCTTGGTCTTTC
CAGCTGCCGCCGCAGCATCATCCCTTACTACTACGACGGCTATCTGGCTA
CGCCCTTCCTCCTCCTTTGCCGCCGCCAGTGCCGCTGCTTTTTACAGAAG
CAGCAATTGTAAGATTCGTCCCTTTCGTCCCCTTTCAGTCGTCAGCACTA
CTCGCTTGCTCATGACGGCCGGAGGCTCTTCTCAGGCCTCAACTGACAGC
TCCGGCACCGGCACGATTAGCACCACCGCGGACATTCAACCCACCAAACA
GCGCGGGGCATTAATCGTTCTGGAAGGCGTAGACCGTTGCGGAAAAACCA
CGCAAGTCGCCCGGCTTGTCAAGTCGTTGCGCGCGAATGGGTTGGCGGCG
GAAGCTATCCGATTTCCAGACCGCACTACTACCATCGGCACGATGATCAA
TGCGTACCTTGCCAAGGCAACGGATTTAGACGACCACGCTATCCATCTTC
TGTTCTCGGCTAATCGCTGGGAGGCGGTGGCGTCTTTACATAGCAAGCTG
GCGGCAGGGACGACATTGGTGTGTGATCGCTACGCGTATAGCGGGGTGGC
CTTCTCGGCGGCCAAACAAGGGATGGACATTGAATGGTGCAAGCAATGCG
ACCGCGGGTTGCCGAAACCGGATGCGGTGATTTATTTGGATATTTCAGTG
GAGGCCGCGGCGGGGCGCGGGCAGTATGGGGAGGAGAGGTACGAGACACA
GGAGATGCAAGGGAAGGTGAGGGAGAACTTTCAGAAGTTAATGGAGGGGG
ATTCAATCTGGCATGTTGTGGACGCAGCAGGGACGCTGGAGGAGGTGAGT
GAGGGGGTGGGGAAGGTGGGTATGGCGACGGTGAAGAAGGTGGGGGAGGG
AGAGAGGGGCCTTGAGACATTGTGGCCCTTGTGAGAGGGGTGGCTTGCCT
TGGGTGGTTGATGGATGGGGTGGAGAAAGGAAAGAAAAGGGGCCTGTGCG
AGTCAGTGAATGGGATGCAAAAGAAGGGGGATCAGTCAATGGGGTGCAAA
TGAAGGGGGGAAAGGGAAAGTAAGAGCATGTAGTCAGCGTTGTAT
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protein sequence of jgi.p|Nanoce1779_2|115753

>mRNA_6883-protein ID=mRNA_6883-protein|Name=jgi.p|Nanoce1779_2|115753|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MTAGGSSQASTDSSGTGTISTTADIQPTKQRGALIVLEGVDRCGKTTQVA
RLVKSLRANGLAAEAIRFPDRTTTIGTMINAYLAKATDLDDHAIHLLFSA
NRWEAVASLHSKLAAGTTLVCDRYAYSGVAFSAAKQGMDIEWCKQCDRGL
PKPDAVIYLDISVEAAAGRGQYGEERYETQEMQGKVRENFQKLMEGDSIW
HVVDAAGTLEEVSEGVGKVGMATVKKVGEGERGLETLWPL*
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mRNA from alignment at scaffold_17:343030..344174+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6883 ID=mRNA_6883|Name=jgi.p|Nanoce1779_2|115753|organism=Nannochloropsis oceanica|type=mRNA|length=1145bp|location=Sequence derived from alignment at scaffold_17:343030..344174+ (Nannochloropsis oceanica)
CAAAAACCAACGGTGGCGCGTTTACTTTCCTGGACGTGGCGGAACGCGGC
CGTGTTTTCTACCTTGTGTGGTTCGTGGCGGCCGACTCTCTTGGTCTTTC
CAGCTGCCGCCGCAGCATCATCCCTTACTACTACGACGGCTATCTGGCTA
CGCCCTTCCTCCTCCTTTGCCGCCGCCAGTGCCGCTGCTTTTTACAGAAG
CAGCAATTGTAAGATTCGTCCCTTTCGTCCCCTTTCAGTCGTCAGCACTA
CTCGCTTGCTCATGACGGCCGGAGGCTCTTCTCAGGCCTCAACTGACAGC
TCCGGCACCGGCACGATTAGCACCACCGCGGACATTCAACCCACCAAACA
GCGCGGGGCATTAATCGTTCTGGAAGGCGTAGACCGTTGCGGAAAAACCA
CGCAAGTCGCCCGGCTTGTCAAGTCGTTGCGCGCGAATGGGTTGGCGGCG
GAAGCTATCCGATTTCCAGACCGCACTACTACCATCGGCACGATGATCAA
TGCGTACCTTGCCAAGGCAACGGATTTAGACGACCACGCTATCCATCTTC
TGTTCTCGGCTAATCGCTGGGAGGCGGTGGCGTCTTTACATAGCAAGCTG
GCGGCAGGGACGACATTGGTGTGTGATCGCTACGCGTATAGCGGGGTGGC
CTTCTCGGCGGCCAAACAAGGGATGGACATTGAATGGTGCAAGCAATGCG
ACCGCGGGTTGCCGAAACCGGATGCGGTGATTTATTTGGATATTTCAGTG
GAGGCCGCGGCGGGGCGCGGGCAGTATGGGGAGGAGAGGTACGAGACACA
GGAGATGCAAGGGAAGGTGAGGGAGAACTTTCAGAAGTTAATGGAGGGGG
ATTCAATCTGGCATGTTGTGGACGCAGCAGGGACGCTGGAGGAGGTGAGT
GAGGGGGTGGGGAAGGTGGGTATGGCGACGGTGAAGAAGGTGGGGGAGGG
AGAGAGGGGCCTTGAGACATTGTGGCCCTTGTGAGAGGGGTGGCTTGCCT
TGGGTGGTTGATGGATGGGGTGGAGAAAGGAAAGAAAAGGGGCCTGTGCG
AGTCAGTGAATGGGATGCAAAAGAAGGGGGATCAGTCAATGGGGTGCAAA
TGAAGGGGGGAAAGGGAAAGTAAGAGCATGTAGTCAGCGTTGTAT
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Coding sequence (CDS) from alignment at scaffold_17:343030..344174+

>mRNA_6883 ID=mRNA_6883|Name=jgi.p|Nanoce1779_2|115753|organism=Nannochloropsis oceanica|type=CDS|length=723bp|location=Sequence derived from alignment at scaffold_17:343030..344174+ (Nannochloropsis oceanica)
ATGACGGCCGGAGGCTCTTCTCAGGCCTCAACTGACAGCTCCGGCACCGG
CACGATTAGCACCACCGCGGACATTCAACCCACCAAACAGCGCGGGGCAT
TAATCGTTCTGGAAGGCGTAGACCGTTGCGGAAAAACCACGCAAGTCGCC
CGGCTTGTCAAGTCGTTGCGCGCGAATGGGTTGGCGGCGGAAGCTATCCG
ATTTCCAGACCGCACTACTACCATCGGCACGATGATCAATGCGTACCTTG
CCAAGGCAACGGATTTAGACGACCACGCTATCCATCTTCTGTTCTCGGCT
AATCGCTGGGAGGCGGTGGCGTCTTTACATAGCAAGCTGGCGGCAGGGAC
GACATTGGTGTGTGATCGCTACGCGTATAGCGGGGTGGCCTTCTCGGCGG
CCAAACAAGGGATGGACATTGAATGGTGCAAGCAATGCGACCGCGGGTTG
CCGAAACCGGATGCGGTGATTTATTTGGATATTTCAGTGGAGGCCGCGGC
GGGGCGCGGGCAGTATGGGGAGGAGAGGTACGAGACACAGGAGATGCAAG
GGAAGGTGAGGGAGAACTTTCAGAAGTTAATGGAGGGGGATTCAATCTGG
CATGTTGTGGACGCAGCAGGGACGCTGGAGGAGGTGAGTGAGGGGGTGGG
GAAGGTGGGTATGGCGACGGTGAAGAAGGTGGGGGAGGGAGAGAGGGGCC
TTGAGACATTGTGGCCCTTGTGA
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Synonyms
Publications