jgi.p|Nanoce1779_2|115886, mRNA_6882 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|115886
Unique Name	mRNA_6882
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2492
Alignment location	scaffold_17:340623..343114 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	115972
Track	FilteredModels2
ProteinId	115886

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:340623..343114 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|115886	gene_6882	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|115886	mRNA_6882-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6882	CDS_6882	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:340623..343114-
coding sequence from alignment at scaffold_17:340623..343114-

mRNA sequence

>mRNA_6882 ID=mRNA_6882|Name=jgi.p|Nanoce1779_2|115886|organism=Nannochloropsis oceanica|type=mRNA|length=2492bp
TCGGCCGCCACGAACCACACAAGGTAGAAAACACGGCCGCGTTCCGCCAC
GTCCAGGAAAGTAAACGCGCCACCGTTGGTTTTTGGTTTTTTTTTGTCGT
GCTGCTGCGGGTGGTTAGGGCCTGTGCTTTGCGATGTTGGCGGTGGGTTC
GGGCTCAACGCATGAAAACAGTGTGGGAAGGGAGGGGGAGGTCGGCGTAG
TGGTCGATCGCCAACACAGGGTTTCTGGCGAACGCGGTAACCTCTATATA
GCCGCACACTTGCCACTATGCCAACCCCAACTAGATCTCCACGACCATGA
AAATTACGATGACAAGCACGCAGAGGAGGACATGCAAGGAAGAAGATGAC
CACGCGTGGAAGAAGGCGGGTGCATTCAATGTTTTGGCGCCCTCAGCCTC
CTCACCTTCCTCCATTATGGCTTCTTCGTCTGCCCTTCACACAAACACAC
AAACTAAGCTTCGCCAATCAATTCTGCTTTATCCCGCACAGGACAGTCCC
TCTCGCCACGAAGCGCGCACGTGGAAAAGTGAAGCTTCAGTCTCCTCGTC
CCTTGTCACCACCAGCTGGAGTCACGCAGCCTTTCTCCATTCTCTCCCGC
TACTTCTTCGTCAGCTTTGCGCTCCTCTTGCTTGTCGTGCTCGACTGCAC
CACTGCCACTGCCCCCCCCAGCCCCAGCACCAGCACCTGCTCTAGCAGCA
CCAACACTCCGTCTTACTTTGCAACCAAAAAGCCCATGTCTCCCCTCGCT
GCCACCGCTGTTGCTGCCGCATCGACCGTCACAAAGGAGGGTCTGAGGGG
TTTTACCATCGTCGTGGCCGCCACCGCCAAGTCCCTGGGCATTGGCAAGC
AAGGCCAACTTCCTTGGAACCTTCCAGAAGACATGGCACATTTCAAACAC
CTCACATCGTCCACCACATTGCCCAACAAGACCAACGCCGTCATCATGGG
CCGTCGGACGTGGCAATCCATCCCCGAGAGATTCCGCCCCCTGCGAAATC
GTCTCAACGTCGTCCTTTCCCGCAATCCCGCAATCCGCGAGCAACTAAAC
CTCCCACAAGGTGTGCGTGTTGCGGCCTCGTTACCCGAGGCATTGGCGTT
GTTGTCCACGGGGGAGGATGCAACGGCGGTCGAGAAAGTGTTTGTGATCG
GCGGGGCTGCTGTTTACAAAGAAGCTTTATCCTCCGACCTATGCGAAGCC
ATTGAATTCACCGCCATCGATGAGGAAGGGCAGGAGGGAGGGCAGGGAGG
AGAGAGGGAGATTTCGAATAACAGCCCGACGCCGCTGTTCGCGGATTGTG
ACGCCTTTTTCCCTACCATCCCTGCCACTGTTTATGGACTCGTCACCTCG
ACCGAGACCTTGACCCAGAATCATTTGCACTTCCGTTTTCAGCGCTTTGA
ACGTTTGAATTACAGGGCTTTACCACCTTTCTATGGCAGCAGTAGCAGCA
GCAGCAGCAACAACCACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAAAACTAAGGGCAGTGCGTCGGC
TCCGGCTGGGGGAGGAAAGAAGGAAGAGGAAAGGAACGAAGAAGAGCAGC
AATACCTGGATCTTGTCCGCGAAATCATTGAGAAGGGCAACCATCGGGGG
GATCGAACACAGACAGGCACCTTGTCCAAGTTTGGAGCACAGCTTCGATT
TAGCCTCAGGAACAATGTGTTTCCTCTCTTAACGACTAAGAGGGTATTTT
GGCGGGGGGTCGCGGAGGAGTTGCTGTGGTTTGTGAGTGGCAAGACAAAC
TCGAATCTATTGAAAGACAAAAAGATTGGAATTTGGGACGGAAACTCTAG
CAGGGAGTACCTGGACAAAATAGGGTTGAGCAATCGGGAGGAGGGAGACC
TAGGACCGGTGTACGGCTTCCAGTGGCGGCATTTTGGGGCTGAATACAAG
GATATGCACGCGGACTACACCGGGAAGGGCATCGATCAGCTGGCAAATGC
AATTGAGACGATAAAGAAAAATCCGGAAGATCGACGGATCATTGTCTCAG
CCTGGAATCCTTCGGATCTGGGGAAGATGGCGTTGCCCCCGTGTCACATG
TTTTGTCAGTTTTATGTGGCAAATGGGGAGCTGTCCTGCCAGATGTACCA
ACGCAGCGCGGATATGGGTTTGGGTGTGCCGTTTAATATTGCTTCGTATG
CATTGCTCACCAGCTTGGTGGCGCAGGTGTGTGGGTTGGCGCCAGGGGAG
TTCGTGCACACAATTGGGGATGCTCACGTTTACTCGAATCACGTCGAGGC
CTTGAAGGAGCAGTTGACGCGAACCCCGGCCAAGTTTCCTCGGCTCTTCA
TTAACCCGGACAAGAAATGCATCGACGACTTTGTGTTTGAGGATTTTCGG
ATTGAGGGGTACACGCCGCAGGAGAACATCAAAATGAAGATGGCGGTGTA
GAGTATAAGGGAGAAAAGAAGAACGAGGGAGGGCGAGCTGAG

protein sequence of jgi.p|Nanoce1779_2|115886

>mRNA_6882-protein ID=mRNA_6882-protein|Name=jgi.p|Nanoce1779_2|115886|organism=Nannochloropsis oceanica|type=polypeptide|length=702bp
MTTRGRRRVHSMFWRPQPPHLPPLWLLRLPFTQTHKLSFANQFCFIPHRT
VPLATKRARGKVKLQSPRPLSPPAGVTQPFSILSRYFFVSFALLLLVVLD
CTTATAPPSPSTSTCSSSTNTPSYFATKKPMSPLAATAVAAASTVTKEGL
RGFTIVVAATAKSLGIGKQGQLPWNLPEDMAHFKHLTSSTTLPNKTNAVI
MGRRTWQSIPERFRPLRNRLNVVLSRNPAIREQLNLPQGVRVAASLPEAL
ALLSTGEDATAVEKVFVIGGAAVYKEALSSDLCEAIEFTAIDEEGQEGGQ
GGEREISNNSPTPLFADCDAFFPTIPATVYGLVTSTETLTQNHLHFRFQR
FERLNYRALPPFYGSSSSSSSNNHNNNNNNNNNNNNNNNNNNNNKTKGSA
SAPAGGGKKEEERNEEEQQYLDLVREIIEKGNHRGDRTQTGTLSKFGAQL
RFSLRNNVFPLLTTKRVFWRGVAEELLWFVSGKTNSNLLKDKKIGIWDGN
SSREYLDKIGLSNREEGDLGPVYGFQWRHFGAEYKDMHADYTGKGIDQLA
NAIETIKKNPEDRRIIVSAWNPSDLGKMALPPCHMFCQFYVANGELSCQM
YQRSADMGLGVPFNIASYALLTSLVAQVCGLAPGEFVHTIGDAHVYSNHV
EALKEQLTRTPAKFPRLFINPDKKCIDDFVFEDFRIEGYTPQENIKMKMA
V*

mRNA from alignment at scaffold_17:340623..343114-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6882 ID=mRNA_6882|Name=jgi.p|Nanoce1779_2|115886|organism=Nannochloropsis oceanica|type=mRNA|length=2492bp|location=Sequence derived from alignment at scaffold_17:340623..343114- (Nannochloropsis oceanica)
TCGGCCGCCACGAACCACACAAGGTAGAAAACACGGCCGCGTTCCGCCAC
GTCCAGGAAAGTAAACGCGCCACCGTTGGTTTTTGGTTTTTTTTTGTCGT
GCTGCTGCGGGTGGTTAGGGCCTGTGCTTTGCGATGTTGGCGGTGGGTTC
GGGCTCAACGCATGAAAACAGTGTGGGAAGGGAGGGGGAGGTCGGCGTAG
TGGTCGATCGCCAACACAGGGTTTCTGGCGAACGCGGTAACCTCTATATA
GCCGCACACTTGCCACTATGCCAACCCCAACTAGATCTCCACGACCATGA
AAATTACGATGACAAGCACGCAGAGGAGGACATGCAAGGAAGAAGATGAC
CACGCGTGGAAGAAGGCGGGTGCATTCAATGTTTTGGCGCCCTCAGCCTC
CTCACCTTCCTCCATTATGGCTTCTTCGTCTGCCCTTCACACAAACACAC
AAACTAAGCTTCGCCAATCAATTCTGCTTTATCCCGCACAGGACAGTCCC
TCTCGCCACGAAGCGCGCACGTGGAAAAGTGAAGCTTCAGTCTCCTCGTC
CCTTGTCACCACCAGCTGGAGTCACGCAGCCTTTCTCCATTCTCTCCCGC
TACTTCTTCGTCAGCTTTGCGCTCCTCTTGCTTGTCGTGCTCGACTGCAC
CACTGCCACTGCCCCCCCCAGCCCCAGCACCAGCACCTGCTCTAGCAGCA
CCAACACTCCGTCTTACTTTGCAACCAAAAAGCCCATGTCTCCCCTCGCT
GCCACCGCTGTTGCTGCCGCATCGACCGTCACAAAGGAGGGTCTGAGGGG
TTTTACCATCGTCGTGGCCGCCACCGCCAAGTCCCTGGGCATTGGCAAGC
AAGGCCAACTTCCTTGGAACCTTCCAGAAGACATGGCACATTTCAAACAC
CTCACATCGTCCACCACATTGCCCAACAAGACCAACGCCGTCATCATGGG
CCGTCGGACGTGGCAATCCATCCCCGAGAGATTCCGCCCCCTGCGAAATC
GTCTCAACGTCGTCCTTTCCCGCAATCCCGCAATCCGCGAGCAACTAAAC
CTCCCACAAGGTGTGCGTGTTGCGGCCTCGTTACCCGAGGCATTGGCGTT
GTTGTCCACGGGGGAGGATGCAACGGCGGTCGAGAAAGTGTTTGTGATCG
GCGGGGCTGCTGTTTACAAAGAAGCTTTATCCTCCGACCTATGCGAAGCC
ATTGAATTCACCGCCATCGATGAGGAAGGGCAGGAGGGAGGGCAGGGAGG
AGAGAGGGAGATTTCGAATAACAGCCCGACGCCGCTGTTCGCGGATTGTG
ACGCCTTTTTCCCTACCATCCCTGCCACTGTTTATGGACTCGTCACCTCG
ACCGAGACCTTGACCCAGAATCATTTGCACTTCCGTTTTCAGCGCTTTGA
ACGTTTGAATTACAGGGCTTTACCACCTTTCTATGGCAGCAGTAGCAGCA
GCAGCAGCAACAACCACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAACAACAACAACAAAACTAAGGGCAGTGCGTCGGC
TCCGGCTGGGGGAGGAAAGAAGGAAGAGGAAAGGAACGAAGAAGAGCAGC
AATACCTGGATCTTGTCCGCGAAATCATTGAGAAGGGCAACCATCGGGGG
GATCGAACACAGACAGGCACCTTGTCCAAGTTTGGAGCACAGCTTCGATT
TAGCCTCAGGAACAATGTGTTTCCTCTCTTAACGACTAAGAGGGTATTTT
GGCGGGGGGTCGCGGAGGAGTTGCTGTGGTTTGTGAGTGGCAAGACAAAC
TCGAATCTATTGAAAGACAAAAAGATTGGAATTTGGGACGGAAACTCTAG
CAGGGAGTACCTGGACAAAATAGGGTTGAGCAATCGGGAGGAGGGAGACC
TAGGACCGGTGTACGGCTTCCAGTGGCGGCATTTTGGGGCTGAATACAAG
GATATGCACGCGGACTACACCGGGAAGGGCATCGATCAGCTGGCAAATGC
AATTGAGACGATAAAGAAAAATCCGGAAGATCGACGGATCATTGTCTCAG
CCTGGAATCCTTCGGATCTGGGGAAGATGGCGTTGCCCCCGTGTCACATG
TTTTGTCAGTTTTATGTGGCAAATGGGGAGCTGTCCTGCCAGATGTACCA
ACGCAGCGCGGATATGGGTTTGGGTGTGCCGTTTAATATTGCTTCGTATG
CATTGCTCACCAGCTTGGTGGCGCAGGTGTGTGGGTTGGCGCCAGGGGAG
TTCGTGCACACAATTGGGGATGCTCACGTTTACTCGAATCACGTCGAGGC
CTTGAAGGAGCAGTTGACGCGAACCCCGGCCAAGTTTCCTCGGCTCTTCA
TTAACCCGGACAAGAAATGCATCGACGACTTTGTGTTTGAGGATTTTCGG
ATTGAGGGGTACACGCCGCAGGAGAACATCAAAATGAAGATGGCGGTGTA
GAGTATAAGGGAGAAAAGAAGAACGAGGGAGGGCGAGCTGAG

Coding sequence (CDS) from alignment at scaffold_17:340623..343114-

>mRNA_6882 ID=mRNA_6882|Name=jgi.p|Nanoce1779_2|115886|organism=Nannochloropsis oceanica|type=CDS|length=2106bp|location=Sequence derived from alignment at scaffold_17:340623..343114- (Nannochloropsis oceanica)
ATGACCACGCGTGGAAGAAGGCGGGTGCATTCAATGTTTTGGCGCCCTCA
GCCTCCTCACCTTCCTCCATTATGGCTTCTTCGTCTGCCCTTCACACAAA
CACACAAACTAAGCTTCGCCAATCAATTCTGCTTTATCCCGCACAGGACA
GTCCCTCTCGCCACGAAGCGCGCACGTGGAAAAGTGAAGCTTCAGTCTCC
TCGTCCCTTGTCACCACCAGCTGGAGTCACGCAGCCTTTCTCCATTCTCT
CCCGCTACTTCTTCGTCAGCTTTGCGCTCCTCTTGCTTGTCGTGCTCGAC
TGCACCACTGCCACTGCCCCCCCCAGCCCCAGCACCAGCACCTGCTCTAG
CAGCACCAACACTCCGTCTTACTTTGCAACCAAAAAGCCCATGTCTCCCC
TCGCTGCCACCGCTGTTGCTGCCGCATCGACCGTCACAAAGGAGGGTCTG
AGGGGTTTTACCATCGTCGTGGCCGCCACCGCCAAGTCCCTGGGCATTGG
CAAGCAAGGCCAACTTCCTTGGAACCTTCCAGAAGACATGGCACATTTCA
AACACCTCACATCGTCCACCACATTGCCCAACAAGACCAACGCCGTCATC
ATGGGCCGTCGGACGTGGCAATCCATCCCCGAGAGATTCCGCCCCCTGCG
AAATCGTCTCAACGTCGTCCTTTCCCGCAATCCCGCAATCCGCGAGCAAC
TAAACCTCCCACAAGGTGTGCGTGTTGCGGCCTCGTTACCCGAGGCATTG
GCGTTGTTGTCCACGGGGGAGGATGCAACGGCGGTCGAGAAAGTGTTTGT
GATCGGCGGGGCTGCTGTTTACAAAGAAGCTTTATCCTCCGACCTATGCG
AAGCCATTGAATTCACCGCCATCGATGAGGAAGGGCAGGAGGGAGGGCAG
GGAGGAGAGAGGGAGATTTCGAATAACAGCCCGACGCCGCTGTTCGCGGA
TTGTGACGCCTTTTTCCCTACCATCCCTGCCACTGTTTATGGACTCGTCA
CCTCGACCGAGACCTTGACCCAGAATCATTTGCACTTCCGTTTTCAGCGC
TTTGAACGTTTGAATTACAGGGCTTTACCACCTTTCTATGGCAGCAGTAG
CAGCAGCAGCAGCAACAACCACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAACAACAACAACAACAACAAAACTAAGGGCAGTGCG
TCGGCTCCGGCTGGGGGAGGAAAGAAGGAAGAGGAAAGGAACGAAGAAGA
GCAGCAATACCTGGATCTTGTCCGCGAAATCATTGAGAAGGGCAACCATC
GGGGGGATCGAACACAGACAGGCACCTTGTCCAAGTTTGGAGCACAGCTT
CGATTTAGCCTCAGGAACAATGTGTTTCCTCTCTTAACGACTAAGAGGGT
ATTTTGGCGGGGGGTCGCGGAGGAGTTGCTGTGGTTTGTGAGTGGCAAGA
CAAACTCGAATCTATTGAAAGACAAAAAGATTGGAATTTGGGACGGAAAC
TCTAGCAGGGAGTACCTGGACAAAATAGGGTTGAGCAATCGGGAGGAGGG
AGACCTAGGACCGGTGTACGGCTTCCAGTGGCGGCATTTTGGGGCTGAAT
ACAAGGATATGCACGCGGACTACACCGGGAAGGGCATCGATCAGCTGGCA
AATGCAATTGAGACGATAAAGAAAAATCCGGAAGATCGACGGATCATTGT
CTCAGCCTGGAATCCTTCGGATCTGGGGAAGATGGCGTTGCCCCCGTGTC
ACATGTTTTGTCAGTTTTATGTGGCAAATGGGGAGCTGTCCTGCCAGATG
TACCAACGCAGCGCGGATATGGGTTTGGGTGTGCCGTTTAATATTGCTTC
GTATGCATTGCTCACCAGCTTGGTGGCGCAGGTGTGTGGGTTGGCGCCAG
GGGAGTTCGTGCACACAATTGGGGATGCTCACGTTTACTCGAATCACGTC
GAGGCCTTGAAGGAGCAGTTGACGCGAACCCCGGCCAAGTTTCCTCGGCT
CTTCATTAACCCGGACAAGAAATGCATCGACGACTTTGTGTTTGAGGATT
TTCGGATTGAGGGGTACACGCCGCAGGAGAACATCAAAATGAAGATGGCG
GTGTAG

Synonyms

Publications