Properties
Property Name | Value |
TranscriptId | 672404 |
Track | FilteredModels2 |
ProteinId | 672318 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_17 | supercontig | scaffold_17:332799..335397 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6880 ID=mRNA_6880|Name=jgi.p|Nanoce1779_2|672318|organism=Nannochloropsis oceanica|type=mRNA|length=2503bp CACCCTCCTCCTACTCCTTCTCCTCGTCCTTGTACTCGTCCTCGTCCTCA CCCAACACAACGACTCACCCAATTTCCTTGCATGGCCTTCGACATTTCCC ATGGCGCACATGTAGCTCCCGGGAGCTGTGTTCAGCACACTGCTGACACC CCGGTGTCTTGCATCGATTGCCACCTCCGTGTTCATACATATCCCTTCCT TACCCGTCCCCGAGAGCTAGCTGTATTCAGCACTCTGCTTGCATCCCGGT TTCTCGCATCGATTGCCACCTCCATGTTTTGTGCCCTTTCCCTCCAATAA TAAACATATAGGAAAAAGGCTAGCGCTTCGCATCATGATGATCGCCAAAT TCTACTCACAATTCCGGCGCACATCAAACTCCAAAAACTCTATTTGTGAA GCTGTCTGCAAGTGAGGCCTGCCTCACTATCCTTATCGTTCTACCTCTCC TCCCGCAACCCGAGATCTTTCACACACCCATCCACAGACCAACCTCCCCA TCCCCCTCATGGCCCTGAGCGCCGAGCGCCTGCTGCGGCCTCTCTTCCCT CCCGATGGCCACGAGGACGGGAAAAATGACCACACCTACGGGGAAGACGA GGGTACGCCGGGTGTTAAGGTGGTGCTGGCGGACTATCAAGGGTGGTGGG CGCCCTTAACACACTTGTTTTACAGCAATGCCTCGCGATCCCTGGTGAGC GCGCATCCTGAAAGCAGCCTGGAGGAAGTCGAGTCGTTTTACTGCACGAA TTGCTTAAACTATTTTGCCGAGGCGGAGGCTGCTGCATCATCTCACCGTT GTCCACAGTGCTTTGACTGTCCCCAGTGCAAGAGCGCATTGGTCATCATG CCTGTGGCCGCGGACAAGGGCGAGGAGGGAAAGAGCGGTGAGACTAATAG TGATGGTGGAAGCGGCTACGCCTTCCGATGTGGATACTGCCTATGGTCAT CTTCAAAGACTCTGGGGTTGGTTGAAACCAAGCCTGAAGATCTGGCAAAG AGAGTGATGGAGGCTAAAGCTTCTCCTCAAGACGTCCGCTTTCGTTCGTT GGTAAGCCAGCTCCGAGAGCGCGCGGTGGAGGTGGCGAGAGACCGTCACT TTCGAGGGCGTCGATTTATTCACATGGGTGGCGAAGAAAAAGCAGGGGGG AATGGAGGAGGTGGACGACGGTGGCATTTGGAGGACTTGGAGAAGAAGGA GGCGCAGCAGGCAGCACAGACAACAGAAGTAGCCCAGGACGTGAAACGAA CTGCAGTTTTGTACAGTATGGTTGAACAAGAGGAGGAACAGGACAAGGGA AAGGGTAGCGACAGCAACAGCAGTATTGACAGTAAAAGTGGTGGTAACCG GTCGTATTCTCTCTCGGCCGAAGAGCACGATTCTGTCCCTCCTTCCCTCC CTTCTTTGACCTCTCTCAACGGCATCACCACAGCAGAGCAACGTCAACAC GCCTGCAGCTCCCACCAGCCTTCATCTACCTCCTCCCTAATCCCTATGCG CCGTCTTCTAACGAGCAAACGCTCACGGCGGTGTCGAGTGGACGTCGAAG AAGGAAGACCCGGTATCTTGTTGAAGCCTAAGGTCAACCCCTTGGAGGGG GATTCGTCGATGAGAAGTCACGTGGGAAAGTGGTGGCAGAAGGACGCAAG TGCTGTGCATGTGTTACCGTTTGTAAGTGTCGTGCAGGCGCGGGGGTTGG AGTGTGTTTTTCATGGAGGGGGAGAAGGAGGAGAAGAAGGAAGAGAAGAA GGAGAAGGAGGAGGAGGAAGAGAAGAAGAAGAAGGGGGAGAAGGGAGCAG CAGTAGGGAGGGCAGCAGCAGCAGCAGCACCATGCCTTACTACCTCAGGC ATCTATCGGTCGCTTTGGGTAGCAGCTTCAGTAGCAGCAGTAGCAGCAGA AGCAGCAGTAGCAGCGGTACTTGTAGCAGTAGTCGTACACGTGATTGTAG TTTTGGCGATGACAATATCAACATGAATGTACTTTATGCCTACGTGCCTG CATTGGGCCGCGAGGATGGGAGGGAACAAGGGAGGGTGGAGGAAGGAGAG GAGTTGGAGCTCGAGGCTTGTGAAGACGAGTATTTGGAGGACGAGAAGGT GGATGAGGATCAAGACACCTTGGACATGCTTGCATTACAAATGTTGGAAA GACAGGAATTGGAGGAGAGCAATAACAATAGCAGTAGCACTAGCAGTAGC AGTAGCACTAGCAGTAGCAGCAGCAGCAGTAGCAGCAGCAAGATGTTGTT GCAACGAAAATCGCGTGCTTGGCTTCATGTGGTGGTGAGGCCACCGTCGT CCCCTCTTTCGGTGGTGGGCGAGGCAGCTGTGGGGGTGTTGCTGTTTTTG CGGCTTACGAGCGACCGCAGTGAATTTAGCAGTACCCGAGGGGAGACTGC TTCGATAGTTGTGCCTGTCTGTCTGGCCTTCACGAGGGGGAGCACGGAAA ACACACCGGAAGGTGATTTTGTAGGACACCTGACACGATTAGGCTTAGAG TAA back to topprotein sequence of jgi.p|Nanoce1779_2|672318 >mRNA_6880-protein ID=mRNA_6880-protein|Name=jgi.p|Nanoce1779_2|672318|organism=Nannochloropsis oceanica|type=polypeptide|length=665bp MALSAERLLRPLFPPDGHEDGKNDHTYGEDEGTPGVKVVLADYQGWWAPL THLFYSNASRSLVSAHPESSLEEVESFYCTNCLNYFAEAEAAASSHRCPQ CFDCPQCKSALVIMPVAADKGEEGKSGETNSDGGSGYAFRCGYCLWSSSK TLGLVETKPEDLAKRVMEAKASPQDVRFRSLVSQLRERAVEVARDRHFRG RRFIHMGGEEKAGGNGGGGRRWHLEDLEKKEAQQAAQTTEVAQDVKRTAV LYSMVEQEEEQDKGKGSDSNSSIDSKSGGNRSYSLSAEEHDSVPPSLPSL TSLNGITTAEQRQHACSSHQPSSTSSLIPMRRLLTSKRSRRCRVDVEEGR PGILLKPKVNPLEGDSSMRSHVGKWWQKDASAVHVLPFVSVVQARGLECV FHGGGEGGEEGREEGEGGGGREEEEGGEGSSSREGSSSSSTMPYYLRHLS VALGSSFSSSSSSRSSSSSGTCSSSRTRDCSFGDDNINMNVLYAYVPALG REDGREQGRVEEGEELELEACEDEYLEDEKVDEDQDTLDMLALQMLERQE LEESNNNSSSTSSSSSTSSSSSSSSSSKMLLQRKSRAWLHVVVRPPSSPL SVVGEAAVGVLLFLRLTSDRSEFSSTRGETASIVVPVCLAFTRGSTENTP EGDFVGHLTRLGLE* back to topmRNA from alignment at scaffold_17:332799..335397+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6880 ID=mRNA_6880|Name=jgi.p|Nanoce1779_2|672318|organism=Nannochloropsis oceanica|type=mRNA|length=2599bp|location=Sequence derived from alignment at scaffold_17:332799..335397+ (Nannochloropsis oceanica) CACCCTCCTCCTACTCCTTCTCCTCGTCCTTGTACTCGTCCTCGTCCTCA
CCCAACACAACGACTCACCCAATTTCCTTGCATGGCCTTCGACATTTCCC
ATGGCGCACATGTAGCTCCCGGGAGCTGTGTTCAGCACACTGCTGACACC
CCGGTGTCTTGCATCGATTGCCACCTCCGTGTTCATACATATCCCTTCCT
TACCCGTCCCCGAGAGCTAGCTGTATTCAGCACTCTGCTTGCATCCCGGT
TTCTCGCATCGATTGCCACCTCCATGTTTTGTGCCCTTTCCCTCCAATAA
TAAACATATAGGAAAAAGGCTAGCGCTTCGCATCATGATGATCGCCAAAT
TCTACTCACAATTCCGGCGCACATCAAACTCCAAAAACTCTATTTGTGAA
GCTGTCTGCAAGTGAGGCCTGCCTCACTATCCTTATCGTTCTACCTCTCC
TCCCGCAACCCGAGATCTTTCACACACCCATCCACAGACCAACCTCCCCA
TCCCCCTCATGGCCCTGAGCGCCGAGCGCCTGCTGCGGCCTCTCTTCCCT
CCCGATGGCCACGAGGACGGGAAAAATGACCACACCTACGGGGAAGACGA
GGGTACGCCGGGTGTTAAGGTGGTGCTGGCGGACTATCAAGGGTGGTGGG
CGCCCTTAACACACTTGTTTTACAGCAATGCCTCGCGATCCCTGGTGAGC
GCGCATCCTGAAAGCAGCCTGGAGGAAGTCGAGTCGTTTTACTGCACGAA
TTGCTTAAACTATTTTGCCGAGGCGGAGGCTGCTGCATCATCTCACCGTT
GTCCACAGTGCTTTGACTGTCCCCAGTGCAAGAGCGCATTGGTCATCATG
CCTGTGGCCGCGGACAAGGGCGAGGAGGGAAAGAGCGGTGAGACTAATAG
TGATGGTGGAAGCGGCTACGCCTTCCGATGTGGATACTGCCTATGGTCAT
CTTCAAAGACTCTGGGGTTGGTTGAAACCAAGCCTGAAGATCTGGCAAAG
AGAGTGATGGAGGCTAAAGCTTCTCCTCAAGACGTCCGCTTTCGTTCGTT
GGTAAGCCAGCTCCGAGAGCGCGCGGTGGAGGTGGCGAGAGACCGTCACT
TTCGAGGGCGTCGATTTATTCACATGGGTGGCGAAGAAAAAGCAGGGGGG
AATGGAGGAGGTGGACGACGGTGGCATTTGGAGGACTTGGAGAAGAAGGA
GGCGCAGCAGGCAGCACAGACAACAGAAGTAGCCCAGGACGTGAAACGAA
CTGCAGTTTTGTACAGTATGGTTGAACAAGAGGAGGAACAGGACAAGGGA
AAGGGTAGCGACAGCAACAGCAGTATTGACAGTAAAAGTGGTGGTAACCG
GTCGTATTCTCTCTCGGCCGAAGAGCACGATTCTGTCCCTCCTTCCCTCC
CTTCTTTGACCTCTCTCAACGGCATCACCACAGCAGAGCAACGTCAACAC
GCCTGCAGCTCCCACCAGCCTTCATCTACCTCCTCCCTAATCCCTATGCG
CCGTCTTCTAACGAGCAAACGCTCACGGCGGTGTCGAGTGGACGTCGAAG
AAGGAAGACCCGGTATCTTGTTGAAGCCTAAGGTCAACCCCTTGGAGGGG
GATTCGTCGATGAGAAGTCACGTGGGAAAGTGGTGGCAGAAGGACGCAAG
TGCTGTGCATGTGTTACCGTTTGTAAGTGTCGTGCAGGCGCGGGGGTTGG
AGTGTGTTTTTCATGGAGGGGGAGAAGGAGGAGAAGAAGGAAGAGAAGAA
GGAGAAGGAGGAGGAGGAAGAGAAGAAGAAGAAGGGGGAGAAGGGAGCAG
CAGTAGGGGTAAGCCCAGCCCTCTCTCCTTCGTTCTTCGTCTGCGAAATT
CGCTCAATGGCAAAGTTAGAATTGCACTTGTCCCACCTCCTACTCCGCCA
TTAGAGGGCAGCAGCAGCAGCAGCACCATGCCTTACTACCTCAGGCATCT
ATCGGTCGCTTTGGGTAGCAGCTTCAGTAGCAGCAGTAGCAGCAGAAGCA
GCAGTAGCAGCGGTACTTGTAGCAGTAGTCGTACACGTGATTGTAGTTTT
GGCGATGACAATATCAACATGAATGTACTTTATGCCTACGTGCCTGCATT
GGGCCGCGAGGATGGGAGGGAACAAGGGAGGGTGGAGGAAGGAGAGGAGT
TGGAGCTCGAGGCTTGTGAAGACGAGTATTTGGAGGACGAGAAGGTGGAT
GAGGATCAAGACACCTTGGACATGCTTGCATTACAAATGTTGGAAAGACA
GGAATTGGAGGAGAGCAATAACAATAGCAGTAGCACTAGCAGTAGCAGTA
GCACTAGCAGTAGCAGCAGCAGCAGTAGCAGCAGCAAGATGTTGTTGCAA
CGAAAATCGCGTGCTTGGCTTCATGTGGTGGTGAGGCCACCGTCGTCCCC
TCTTTCGGTGGTGGGCGAGGCAGCTGTGGGGGTGTTGCTGTTTTTGCGGC
TTACGAGCGACCGCAGTGAATTTAGCAGTACCCGAGGGGAGACTGCTTCG
ATAGTTGTGCCTGTCTGTCTGGCCTTCACGAGGGGGAGCACGGAAAACAC
ACCGGAAGGTGATTTTGTAGGACACCTGACACGATTAGGCTTAGAGTAA back to topCoding sequence (CDS) from alignment at scaffold_17:332799..335397+ >mRNA_6880 ID=mRNA_6880|Name=jgi.p|Nanoce1779_2|672318|organism=Nannochloropsis oceanica|type=CDS|length=3990bp|location=Sequence derived from alignment at scaffold_17:332799..335397+ (Nannochloropsis oceanica) ATGGCCCTGAGCGCCGAGCGCCTGCTGCGGCCTCTCTTCCCTCCCGATGG CCACGAGGACGGGAAAAATGACCACACCTACGGGGAAGACGAGGGTACGC CGGGTGTTAAGGTGGTGCTGGCGGACTATCAAGGGTGGTGGGCGCCCTTA ACACACTTGTTTTACAGCAATGCCTCGCGATCCCTGGTGAGCGCGCATCC TGAAAGCAGCCTGGAGGAAGTCGAGTCGTTTTACTGCACGAATTGCTTAA ACTATTTTGCCGAGGCGGAGGCTGCTGCATCATCTCACCGTTGTCCACAG TGCTTTGACTGTCCCCAGTGCAAGAGCGCATTGGTCATCATGCCTGTGGC CGCGGACAAGGGCGAGGAGGGAAAGAGCGGTGAGACTAATAGTGATGGTG GAAGCGGCTACGCCTTCCGATGTGGATACTGCCTATGGTCATCTTCAAAG ACTCTGGGGTTGGTTGAAACCAAGCCTGAAGATCTGGCAAAGAGAGTGAT GGAGGCTAAAGCTTCTCCTCAAGACGTCCGCTTTCGTTCGTTGGTAAGCC AGCTCCGAGAGCGCGCGGTGGAGGTGGCGAGAGACCGTCACTTTCGAGGG CGTCGATTTATTCACATGGGTGGCGAAGAAAAAGCAGGGGGGAATGGAGG AGGTGGACGACGGTGGCATTTGGAGGACTTGGAGAAGAAGGAGGCGCAGC AGGCAGCACAGACAACAGAAGTAGCCCAGGACGTGAAACGAACTGCAGTT TTGTACAGTATGGTTGAACAAGAGGAGGAACAGGACAAGGGAAAGGGTAG CGACAGCAACAGCAGTATTGACAGTAAAAGTGGTGGTAACCGGTCGTATT CTCTCTCGGCCGAAGAGCACGATTCTGTCCCTCCTTCCCTCCCTTCTTTG ACCTCTCTCAACGGCATCACCACAGCAGAGCAACGTCAACACGCCTGCAG CTCCCACCAGCCTTCATCTACCTCCTCCCTAATCCCTATGCGCCGTCTTC TAACGAGCAAACGCTCACGGCGGTGTCGAGTGGACGTCGAAGAAGGAAGA CCCGGTATCTTGTTGAAGCCTAAGGTCAACCCCTTGGAGGGGGATTCGTC GATGAGAAGTCACGTGGGAAAGTGGTGGCAGAAGGACGCAAGTGCTGTGC ATGTGTTACCGTTTGTAAGTGTCGTGCAGGCGCGGGGGTTGGAGTGTGTT TTTCATGGAGGGGGAGAAGGAGGAGAAGAAGGAAGAGAAGAAGGAGAAGG AGGAGGAGGAAGAGAAGAAGAAGAAGGGGGAGAAGGGAGCAGCAGTAGGG AGGGCAGCAGCAGCAGCAGCACCATGCCTTACTACCTCAGGCATCTATCG GTCGCTTTGGGTAGCAGCTTCAGTAGCAGCAGTAGCAGCAGAAGCAGCAG TAGCAGCGGTACTTGTAGCAGTAGTCGTACACGTGATTGTAGTTTTGGCG ATGACAATATCAACATGAATGTACTTTATGCCTACGTGCCTGCATTGGGC CGCGAGGATGGGAGGGAACAAGGGAGGGTGGAGGAAGGAGAGGAGTTGGA GCTCGAGGCTTGTGAAGACGAGTATTTGGAGGACGAGAAGGTGGATGAGG ATCAAGACACCTTGGACATGCTTGCATTACAAATGTTGGAAAGACAGGAA TTGGAGGAGAGCAATAACAATAGCAGTAGCACTAGCAGTAGCAGTAGCAC TAGCAGTAGCAGCAGCAGCAGTAGCAGCAGCAAGATGTTGTTGCAACGAA AATCGCGTGCTTGGCTTCATGTGGTGGTGAGGCCACCGTCGTCCCCTCTT TCGGTGGTGGGCGAGGCAGCTGTGGGGGTGTTGCTGTTTTTGCGGCTTAC GAGCGACCGCAGTGAATTTAGCAGTACCCGAGGGGAGACTGCTTCGATAG TTGTGCCTGTCTGTCTGGCCTTCACGAGGGGGAGCACGGAAAACACACCG GAAGGTGATTTTGTAGGACACCTGACACGATTAGGCTTAGAGTAAATGGC CCTGAGCGCCGAGCGCCTGCTGCGGCCTCTCTTCCCTCCCGATGGCCACG AGGACGGGAAAAATGACCACACCTACGGGGAAGACGAGGGTACGCCGGGT GTTAAGGTGGTGCTGGCGGACTATCAAGGGTGGTGGGCGCCCTTAACACA CTTGTTTTACAGCAATGCCTCGCGATCCCTGGTGAGCGCGCATCCTGAAA GCAGCCTGGAGGAAGTCGAGTCGTTTTACTGCACGAATTGCTTAAACTAT TTTGCCGAGGCGGAGGCTGCTGCATCATCTCACCGTTGTCCACAGTGCTT TGACTGTCCCCAGTGCAAGAGCGCATTGGTCATCATGCCTGTGGCCGCGG ACAAGGGCGAGGAGGGAAAGAGCGGTGAGACTAATAGTGATGGTGGAAGC GGCTACGCCTTCCGATGTGGATACTGCCTATGGTCATCTTCAAAGACTCT GGGGTTGGTTGAAACCAAGCCTGAAGATCTGGCAAAGAGAGTGATGGAGG CTAAAGCTTCTCCTCAAGACGTCCGCTTTCGTTCGTTGGTAAGCCAGCTC CGAGAGCGCGCGGTGGAGGTGGCGAGAGACCGTCACTTTCGAGGGCGTCG ATTTATTCACATGGGTGGCGAAGAAAAAGCAGGGGGGAATGGAGGAGGTG GACGACGGTGGCATTTGGAGGACTTGGAGAAGAAGGAGGCGCAGCAGGCA GCACAGACAACAGAAGTAGCCCAGGACGTGAAACGAACTGCAGTTTTGTA CAGTATGGTTGAACAAGAGGAGGAACAGGACAAGGGAAAGGGTAGCGACA GCAACAGCAGTATTGACAGTAAAAGTGGTGGTAACCGGTCGTATTCTCTC TCGGCCGAAGAGCACGATTCTGTCCCTCCTTCCCTCCCTTCTTTGACCTC TCTCAACGGCATCACCACAGCAGAGCAACGTCAACACGCCTGCAGCTCCC ACCAGCCTTCATCTACCTCCTCCCTAATCCCTATGCGCCGTCTTCTAACG AGCAAACGCTCACGGCGGTGTCGAGTGGACGTCGAAGAAGGAAGACCCGG TATCTTGTTGAAGCCTAAGGTCAACCCCTTGGAGGGGGATTCGTCGATGA GAAGTCACGTGGGAAAGTGGTGGCAGAAGGACGCAAGTGCTGTGCATGTG TTACCGTTTGTAAGTGTCGTGCAGGCGCGGGGGTTGGAGTGTGTTTTTCA TGGAGGGGGAGAAGGAGGAGAAGAAGGAAGAGAAGAAGGAGAAGGAGGAG GAGGAAGAGAAGAAGAAGAAGGGGGAGAAGGGAGCAGCAGTAGGGAGGGC AGCAGCAGCAGCAGCACCATGCCTTACTACCTCAGGCATCTATCGGTCGC TTTGGGTAGCAGCTTCAGTAGCAGCAGTAGCAGCAGAAGCAGCAGTAGCA GCGGTACTTGTAGCAGTAGTCGTACACGTGATTGTAGTTTTGGCGATGAC AATATCAACATGAATGTACTTTATGCCTACGTGCCTGCATTGGGCCGCGA GGATGGGAGGGAACAAGGGAGGGTGGAGGAAGGAGAGGAGTTGGAGCTCG AGGCTTGTGAAGACGAGTATTTGGAGGACGAGAAGGTGGATGAGGATCAA GACACCTTGGACATGCTTGCATTACAAATGTTGGAAAGACAGGAATTGGA GGAGAGCAATAACAATAGCAGTAGCACTAGCAGTAGCAGTAGCACTAGCA GTAGCAGCAGCAGCAGTAGCAGCAGCAAGATGTTGTTGCAACGAAAATCG CGTGCTTGGCTTCATGTGGTGGTGAGGCCACCGTCGTCCCCTCTTTCGGT GGTGGGCGAGGCAGCTGTGGGGGTGTTGCTGTTTTTGCGGCTTACGAGCG ACCGCAGTGAATTTAGCAGTACCCGAGGGGAGACTGCTTCGATAGTTGTG CCTGTCTGTCTGGCCTTCACGAGGGGGAGCACGGAAAACACACCGGAAGG TGATTTTGTAGGACACCTGACACGATTAGGCTTAGAGTAA back to top
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