jgi.p|Nanoce1779_2|596637, mRNA_6878 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596637
Unique NamemRNA_6878
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1925
Alignment locationscaffold_17:326676..328600 -

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Properties
Property NameValue
TranscriptId596723
TrackFilteredModels2
ProteinId596637
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:326676..328600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596637gene_6878Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596637mRNA_6878-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6878CDS_6878Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6878 ID=mRNA_6878|Name=jgi.p|Nanoce1779_2|596637|organism=Nannochloropsis oceanica|type=mRNA|length=1925bp
AGCCAGGACCGAGGAGGGTAATATTTTTCGAGCGGGACGGCCTTCAAATT
CCCTCTTCCTCTCCCAAACGATCCGCATTGATCACTGCCACATCAAGCTT
TCCACCAGGGCGCTCTTTGCCGCGGCACGCGTCAGGACGAGGAGGAGCGG
GAGTGGAAAAAACCGAGCCATCACCATGGCCACGCCTTTGGGCCCGTCCT
TTTCCCAGATCGAGACTACCGCCGCTGCTCGTTCACCGCCTCCCGGGACA
ACCGTACGCCCCTCAAGCCGCAGCGGCTCTAACGATGCGTCCCTTGGTTC
ATCTCTTCGACTCCCCACAGGCGTGATTCACTCGGTCCTCTCTCACCTGG
AGGCTCGCGACCTCAGCACTTCCGCGCAAGTCTGCTGCGAGCTCTACGAG
TGCTGCGACCATCCTGCCCTATGGGAAGCTGCCGGGCAAGTCACATACCC
CCACGCCGAAAAGCTTGGAGCCCTCCAACTTTACAACGGAGAATGGAAAA
CGCTGCTCCGCGATCAGAACCGGCGGGATCGTTCCACCCTCTTCGAATGG
GAAGTCACCGACTGCCTGACCAACACCGCCCGCCGCTTTTCCCCCACCTT
CCTCCTGGGCGATTACACCTTCCAACTAATCGTCGATCCCAACGGCAACC
CCTACGTACCCCTCGCCAAGCCCGGCGTCTCGGTCTATCTAACCTGCTGC
CCTACCCAGTACGTCCGCGGCCTCTCCCCCTCTGGACGCCTGTGCATGGA
TCCCATGGCCGACTACCTCCCCAACATCCACAGCGCAAATGGCCTGCCTC
CTATCGACACATGGGAATGCTGCGTGGCCTTCGCTTTGGCAGTGGTCAAC
CAAACGGGCGCTCGGCGTAACTTACCGTGAGTATCGAACCTGCTCCACGA
TCGGTTTAAACCCAATTGCCGTGAATGGGGGGTGCATCGCCTCGTCTCCC
TCCGCCGCTTACAAGAACATGCCAACGGCTATCTATCCGAGAAGGGATCC
ATCAAAGTCCAGGCCCATTTGCGTCTGGCGTGTTTGTCGTTGAAACTGTT
CACGTCGGACGCAATGAAGGGGTATCGAGGGTTTGGCCTGGCTGAGTTCA
GCAATGCGGCTCTCACGGCAAGGGGGGGGAAGGTTAGGTCGTGCTTAAGC
CCTCCCCCCCCGCCTCCTCCTTTGGTACCCGCGGAGCAGCCGCAGGTGGC
GTTTACGGCGGCGGTTGACATAGAAGGGTTAGGAGATGGAGAAGGAGGAT
TGGGAGGGGTGATAATGGAGATGGAGGAGGGCATGGAAGAGGAGGGGGAG
GAAAAGGAGGAAGAAGATGAAGACGAGGAAGGGAGGGAAGAGGCGAAGGA
GGAAGGGGAGGAGGACGAGTTGGATTTGAACCCCCTTCCTCTTCTTCCCC
CTCCTCCTCCTCTTCTTTCGGCAGTTGCCAACCCGTCCTCGTCCCCCGCG
TCCTGGACGTGCGCACCCACCACTGCTGTCGCCCCTCCCACTAAGGACAC
CGACAGCTCCAACCCCTCCCTCTCTTCCTCCCTCGCTCCCACCCACCCAC
CACCATTCCGGGTCTACGAGGTCTTTCAATGTATGACCGTCGCCGCCTTC
CGCCGCCTCCTTGCCCGGGACCTGCTCCCGCCCTCCTTGACTTTTTCCTC
TTCCTCCTCCCTCCGCCTCTGGACTGTCACCCAACCATGGGCGGACTTGC
CCGCTGCTCCCCGCGAGCTTGTTCGTAGCCTCCCTCCCTCCGACCATCCC
TCCCTGCCTGAGGACTTGGACTGGGCAGAGGCCTCGATTGAGACATTGGA
AGAGCACCAGACGCTCGCTATGGCTCTAGATGCACATGTGGATAGCGTGG
GCGAGGCGAGGGTGTGGGTGGAGATTGCTGGGGATGGTGGGCTGAAATCA
GCGACAGGAGGAGGGAAAGCAAGGG
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protein sequence of jgi.p|Nanoce1779_2|596637

>mRNA_6878-protein ID=mRNA_6878-protein|Name=jgi.p|Nanoce1779_2|596637|organism=Nannochloropsis oceanica|type=polypeptide|length=235bp
MATPLGPSFSQIETTAAARSPPPGTTVRPSSRSGSNDASLGSSLRLPTGV
IHSVLSHLEARDLSTSAQVCCELYECCDHPALWEAAGQVTYPHAEKLGAL
QLYNGEWKTLLRDQNRRDRSTLFEWEVTDCLTNTARRFSPTFLLGDYTFQ
LIVDPNGNPYVPLAKPGVSVYLTCCPTQYVRGLSPSGRLCMDPMADYLPN
IHSANGLPPIDTWECCVAFALAVVNQTGARRNLP*
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mRNA from alignment at scaffold_17:326676..328600-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6878 ID=mRNA_6878|Name=jgi.p|Nanoce1779_2|596637|organism=Nannochloropsis oceanica|type=mRNA|length=1925bp|location=Sequence derived from alignment at scaffold_17:326676..328600- (Nannochloropsis oceanica)
AGCCAGGACCGAGGAGGGTAATATTTTTCGAGCGGGACGGCCTTCAAATT
CCCTCTTCCTCTCCCAAACGATCCGCATTGATCACTGCCACATCAAGCTT
TCCACCAGGGCGCTCTTTGCCGCGGCACGCGTCAGGACGAGGAGGAGCGG
GAGTGGAAAAAACCGAGCCATCACCATGGCCACGCCTTTGGGCCCGTCCT
TTTCCCAGATCGAGACTACCGCCGCTGCTCGTTCACCGCCTCCCGGGACA
ACCGTACGCCCCTCAAGCCGCAGCGGCTCTAACGATGCGTCCCTTGGTTC
ATCTCTTCGACTCCCCACAGGCGTGATTCACTCGGTCCTCTCTCACCTGG
AGGCTCGCGACCTCAGCACTTCCGCGCAAGTCTGCTGCGAGCTCTACGAG
TGCTGCGACCATCCTGCCCTATGGGAAGCTGCCGGGCAAGTCACATACCC
CCACGCCGAAAAGCTTGGAGCCCTCCAACTTTACAACGGAGAATGGAAAA
CGCTGCTCCGCGATCAGAACCGGCGGGATCGTTCCACCCTCTTCGAATGG
GAAGTCACCGACTGCCTGACCAACACCGCCCGCCGCTTTTCCCCCACCTT
CCTCCTGGGCGATTACACCTTCCAACTAATCGTCGATCCCAACGGCAACC
CCTACGTACCCCTCGCCAAGCCCGGCGTCTCGGTCTATCTAACCTGCTGC
CCTACCCAGTACGTCCGCGGCCTCTCCCCCTCTGGACGCCTGTGCATGGA
TCCCATGGCCGACTACCTCCCCAACATCCACAGCGCAAATGGCCTGCCTC
CTATCGACACATGGGAATGCTGCGTGGCCTTCGCTTTGGCAGTGGTCAAC
CAAACGGGCGCTCGGCGTAACTTACCGTGAGTATCGAACCTGCTCCACGA
TCGGTTTAAACCCAATTGCCGTGAATGGGGGGTGCATCGCCTCGTCTCCC
TCCGCCGCTTACAAGAACATGCCAACGGCTATCTATCCGAGAAGGGATCC
ATCAAAGTCCAGGCCCATTTGCGTCTGGCGTGTTTGTCGTTGAAACTGTT
CACGTCGGACGCAATGAAGGGGTATCGAGGGTTTGGCCTGGCTGAGTTCA
GCAATGCGGCTCTCACGGCAAGGGGGGGGAAGGTTAGGTCGTGCTTAAGC
CCTCCCCCCCCGCCTCCTCCTTTGGTACCCGCGGAGCAGCCGCAGGTGGC
GTTTACGGCGGCGGTTGACATAGAAGGGTTAGGAGATGGAGAAGGAGGAT
TGGGAGGGGTGATAATGGAGATGGAGGAGGGCATGGAAGAGGAGGGGGAG
GAAAAGGAGGAAGAAGATGAAGACGAGGAAGGGAGGGAAGAGGCGAAGGA
GGAAGGGGAGGAGGACGAGTTGGATTTGAACCCCCTTCCTCTTCTTCCCC
CTCCTCCTCCTCTTCTTTCGGCAGTTGCCAACCCGTCCTCGTCCCCCGCG
TCCTGGACGTGCGCACCCACCACTGCTGTCGCCCCTCCCACTAAGGACAC
CGACAGCTCCAACCCCTCCCTCTCTTCCTCCCTCGCTCCCACCCACCCAC
CACCATTCCGGGTCTACGAGGTCTTTCAATGTATGACCGTCGCCGCCTTC
CGCCGCCTCCTTGCCCGGGACCTGCTCCCGCCCTCCTTGACTTTTTCCTC
TTCCTCCTCCCTCCGCCTCTGGACTGTCACCCAACCATGGGCGGACTTGC
CCGCTGCTCCCCGCGAGCTTGTTCGTAGCCTCCCTCCCTCCGACCATCCC
TCCCTGCCTGAGGACTTGGACTGGGCAGAGGCCTCGATTGAGACATTGGA
AGAGCACCAGACGCTCGCTATGGCTCTAGATGCACATGTGGATAGCGTGG
GCGAGGCGAGGGTGTGGGTGGAGATTGCTGGGGATGGTGGGCTGAAATCA
GCGACAGGAGGAGGGAAAGCAAGGG
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Coding sequence (CDS) from alignment at scaffold_17:326676..328600-

>mRNA_6878 ID=mRNA_6878|Name=jgi.p|Nanoce1779_2|596637|organism=Nannochloropsis oceanica|type=CDS|length=705bp|location=Sequence derived from alignment at scaffold_17:326676..328600- (Nannochloropsis oceanica)
ATGGCCACGCCTTTGGGCCCGTCCTTTTCCCAGATCGAGACTACCGCCGC
TGCTCGTTCACCGCCTCCCGGGACAACCGTACGCCCCTCAAGCCGCAGCG
GCTCTAACGATGCGTCCCTTGGTTCATCTCTTCGACTCCCCACAGGCGTG
ATTCACTCGGTCCTCTCTCACCTGGAGGCTCGCGACCTCAGCACTTCCGC
GCAAGTCTGCTGCGAGCTCTACGAGTGCTGCGACCATCCTGCCCTATGGG
AAGCTGCCGGGCAAGTCACATACCCCCACGCCGAAAAGCTTGGAGCCCTC
CAACTTTACAACGGAGAATGGAAAACGCTGCTCCGCGATCAGAACCGGCG
GGATCGTTCCACCCTCTTCGAATGGGAAGTCACCGACTGCCTGACCAACA
CCGCCCGCCGCTTTTCCCCCACCTTCCTCCTGGGCGATTACACCTTCCAA
CTAATCGTCGATCCCAACGGCAACCCCTACGTACCCCTCGCCAAGCCCGG
CGTCTCGGTCTATCTAACCTGCTGCCCTACCCAGTACGTCCGCGGCCTCT
CCCCCTCTGGACGCCTGTGCATGGATCCCATGGCCGACTACCTCCCCAAC
ATCCACAGCGCAAATGGCCTGCCTCCTATCGACACATGGGAATGCTGCGT
GGCCTTCGCTTTGGCAGTGGTCAACCAAACGGGCGCTCGGCGTAACTTAC
CGTGA
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Synonyms
Publications