jgi.p|Nanoce1779_2|596635, mRNA_6877 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596635
Unique NamemRNA_6877
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1217
Alignment locationscaffold_17:324846..326062 -

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Properties
Property NameValue
TranscriptId596721
TrackFilteredModels2
ProteinId596635
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:324846..326062 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596635gene_6877Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596635mRNA_6877-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6877CDS_6877Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6877 ID=mRNA_6877|Name=jgi.p|Nanoce1779_2|596635|organism=Nannochloropsis oceanica|type=mRNA|length=1217bp
CATCACTACGCCCATTAAATTCCTCTTGGATTATATGTCCAAAGAGGCAC
TGCCTGAGGAGGAGGGAGGGAGGGAGGGAGGAGGGAAGGGGCTTCGGATT
GTCGTCGAGACACCACCGACGAACTGGCAGTCTCCTGCATTGAGTGATGG
AGAGGGAAACGGAGGGCGTGGGGTGGAGCGAGTGGGGGGTGGAAGTACGG
CGGCACTTGACCGGCAGGATTGTCAGAAGCATGAGGAATACGAAAGGGGA
GGATCGCATTTCCGGTGCTTGGACTATCACCCGACCAAAACTCTCAAAGA
TCTTCGGCTCGAAAATGGACAGATTCTGTGTTTCTTTCTGGTGGGACAGG
AAGGGGAAGTGCAACGGGCATATCAGAATCTCGCGCATGCCTTGCTAACG
GAAGCAGCCTCAGTCGTTGATTGGACGGGCCCAACCGCCAAGGTTGAGGA
AAGACGCTGTCCGCTTTCCATTATGCTGCAGCAACCCCGCCCTTCCTCCC
TCCCTGTGTCCCTCTCGGCCGATGCCTCGCTCTGTGTTCGTCCCCGAGGC
TCCCGTCTCCGCCCTCGTCTTCTTCTTGACACAGTGGCTGACTTGTTTGA
AAAGTTGGGGACTCAACGCTTCCGTGTCCGCAACACGTTTTTCGAACATG
CCCATACCAATGCACGGGAAACGCTGGAGTACAGTTTGGGAAGGCATTTG
GGGTTTTGTTGCGATCGGTGTGGTTGTTTAGATTTCAAGGGCCCACGGTT
TAAATGTTGTATATGCCAGGATTATGACTTGTGTCAGGCCTGTCGCCAGC
TGCCGGTGGAGACGCACCGGTACCGGTTTCAGGGCCGGGCATGGGCGAAG
GAGGAGTATCAAGGACATAGAGAAGGGCATGCCATGGTGTGCTTGCAACC
TATACCGGCGACGGTGGCCATGTTGAAAAGTTTTCGTGTAAGGGAGGAGG
AGGAAAGGAAGGAGGAGAGGAAGGTCGGAGAGGATGGGGGAGAGATGATG
GATTAGAGTTGGAGTGCCCGGGAAGGAGGGTAGAGTTAGATTGAATGAGG
CAGGAAGCGTGTTTACATACATACATAGAGGCATAGACATAGATGTACTC
AAGGACTCAAGACGGGCGGCTTTATGTTTCCATGAATGGCCAAATGAGAA
TCAAAGAGAAATGAAGCGAGCTACGGAGATGAGAAAAGAAAGAAGTAGAG
AATGAATGCTGATGCGA
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protein sequence of jgi.p|Nanoce1779_2|596635

>mRNA_6877-protein ID=mRNA_6877-protein|Name=jgi.p|Nanoce1779_2|596635|organism=Nannochloropsis oceanica|type=polypeptide|length=324bp
MSKEALPEEEGGREGGGKGLRIVVETPPTNWQSPALSDGEGNGGRGVERV
GGGSTAALDRQDCQKHEEYERGGSHFRCLDYHPTKTLKDLRLENGQILCF
FLVGQEGEVQRAYQNLAHALLTEAASVVDWTGPTAKVEERRCPLSIMLQQ
PRPSSLPVSLSADASLCVRPRGSRLRPRLLLDTVADLFEKLGTQRFRVRN
TFFEHAHTNARETLEYSLGRHLGFCCDRCGCLDFKGPRFKCCICQDYDLC
QACRQLPVETHRYRFQGRAWAKEEYQGHREGHAMVCLQPIPATVAMLKSF
RVREEEERKEERKVGEDGGEMMD*
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mRNA from alignment at scaffold_17:324846..326062-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6877 ID=mRNA_6877|Name=jgi.p|Nanoce1779_2|596635|organism=Nannochloropsis oceanica|type=mRNA|length=1217bp|location=Sequence derived from alignment at scaffold_17:324846..326062- (Nannochloropsis oceanica)
CATCACTACGCCCATTAAATTCCTCTTGGATTATATGTCCAAAGAGGCAC
TGCCTGAGGAGGAGGGAGGGAGGGAGGGAGGAGGGAAGGGGCTTCGGATT
GTCGTCGAGACACCACCGACGAACTGGCAGTCTCCTGCATTGAGTGATGG
AGAGGGAAACGGAGGGCGTGGGGTGGAGCGAGTGGGGGGTGGAAGTACGG
CGGCACTTGACCGGCAGGATTGTCAGAAGCATGAGGAATACGAAAGGGGA
GGATCGCATTTCCGGTGCTTGGACTATCACCCGACCAAAACTCTCAAAGA
TCTTCGGCTCGAAAATGGACAGATTCTGTGTTTCTTTCTGGTGGGACAGG
AAGGGGAAGTGCAACGGGCATATCAGAATCTCGCGCATGCCTTGCTAACG
GAAGCAGCCTCAGTCGTTGATTGGACGGGCCCAACCGCCAAGGTTGAGGA
AAGACGCTGTCCGCTTTCCATTATGCTGCAGCAACCCCGCCCTTCCTCCC
TCCCTGTGTCCCTCTCGGCCGATGCCTCGCTCTGTGTTCGTCCCCGAGGC
TCCCGTCTCCGCCCTCGTCTTCTTCTTGACACAGTGGCTGACTTGTTTGA
AAAGTTGGGGACTCAACGCTTCCGTGTCCGCAACACGTTTTTCGAACATG
CCCATACCAATGCACGGGAAACGCTGGAGTACAGTTTGGGAAGGCATTTG
GGGTTTTGTTGCGATCGGTGTGGTTGTTTAGATTTCAAGGGCCCACGGTT
TAAATGTTGTATATGCCAGGATTATGACTTGTGTCAGGCCTGTCGCCAGC
TGCCGGTGGAGACGCACCGGTACCGGTTTCAGGGCCGGGCATGGGCGAAG
GAGGAGTATCAAGGACATAGAGAAGGGCATGCCATGGTGTGCTTGCAACC
TATACCGGCGACGGTGGCCATGTTGAAAAGTTTTCGTGTAAGGGAGGAGG
AGGAAAGGAAGGAGGAGAGGAAGGTCGGAGAGGATGGGGGAGAGATGATG
GATTAGAGTTGGAGTGCCCGGGAAGGAGGGTAGAGTTAGATTGAATGAGG
CAGGAAGCGTGTTTACATACATACATAGAGGCATAGACATAGATGTACTC
AAGGACTCAAGACGGGCGGCTTTATGTTTCCATGAATGGCCAAATGAGAA
TCAAAGAGAAATGAAGCGAGCTACGGAGATGAGAAAAGAAAGAAGTAGAG
AATGAATGCTGATGCGA
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Coding sequence (CDS) from alignment at scaffold_17:324846..326062-

>mRNA_6877 ID=mRNA_6877|Name=jgi.p|Nanoce1779_2|596635|organism=Nannochloropsis oceanica|type=CDS|length=972bp|location=Sequence derived from alignment at scaffold_17:324846..326062- (Nannochloropsis oceanica)
ATGTCCAAAGAGGCACTGCCTGAGGAGGAGGGAGGGAGGGAGGGAGGAGG
GAAGGGGCTTCGGATTGTCGTCGAGACACCACCGACGAACTGGCAGTCTC
CTGCATTGAGTGATGGAGAGGGAAACGGAGGGCGTGGGGTGGAGCGAGTG
GGGGGTGGAAGTACGGCGGCACTTGACCGGCAGGATTGTCAGAAGCATGA
GGAATACGAAAGGGGAGGATCGCATTTCCGGTGCTTGGACTATCACCCGA
CCAAAACTCTCAAAGATCTTCGGCTCGAAAATGGACAGATTCTGTGTTTC
TTTCTGGTGGGACAGGAAGGGGAAGTGCAACGGGCATATCAGAATCTCGC
GCATGCCTTGCTAACGGAAGCAGCCTCAGTCGTTGATTGGACGGGCCCAA
CCGCCAAGGTTGAGGAAAGACGCTGTCCGCTTTCCATTATGCTGCAGCAA
CCCCGCCCTTCCTCCCTCCCTGTGTCCCTCTCGGCCGATGCCTCGCTCTG
TGTTCGTCCCCGAGGCTCCCGTCTCCGCCCTCGTCTTCTTCTTGACACAG
TGGCTGACTTGTTTGAAAAGTTGGGGACTCAACGCTTCCGTGTCCGCAAC
ACGTTTTTCGAACATGCCCATACCAATGCACGGGAAACGCTGGAGTACAG
TTTGGGAAGGCATTTGGGGTTTTGTTGCGATCGGTGTGGTTGTTTAGATT
TCAAGGGCCCACGGTTTAAATGTTGTATATGCCAGGATTATGACTTGTGT
CAGGCCTGTCGCCAGCTGCCGGTGGAGACGCACCGGTACCGGTTTCAGGG
CCGGGCATGGGCGAAGGAGGAGTATCAAGGACATAGAGAAGGGCATGCCA
TGGTGTGCTTGCAACCTATACCGGCGACGGTGGCCATGTTGAAAAGTTTT
CGTGTAAGGGAGGAGGAGGAAAGGAAGGAGGAGAGGAAGGTCGGAGAGGA
TGGGGGAGAGATGATGGATTAG
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Synonyms
Publications