Properties
Property Name | Value |
TranscriptId | 596719 |
Track | FilteredModels2 |
ProteinId | 596633 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_17 | supercontig | scaffold_17:320935..323897 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_6876 ID=mRNA_6876|Name=jgi.p|Nanoce1779_2|596633|organism=Nannochloropsis oceanica|type=mRNA|length=2839bp AACAGATGGTACCTTCTCGACTTCTGTCGACCCCTTCTTGTGCCGACAAC CACTCCTCCCCCGCTGCTGGTGCCACCTCTTCCCTTTACGAGAATGACAA TGCCTTTTTGGAAGCCTCTCTCGATGCCACTGACATCCCGGCCAGTCCGG ACCCTGTAAAGGCTGCGGGACACTGCCAGTCCCCTCACCAAGCAGAACAG CAGCCCCCAGTCAGTTATGGGCCACCCCAGCAGCACCAGCACCAGCAGCA GCAAGATGTATCAGAACAAGCCAAAGGGGTGGCGATGCCTGACGATTCAT GCGACTTCTTGCTGCATATTTCAGACTCCCCTTTCTCCCGCCTTCGGGTC CGAGGAGGGGTCGCCTGTACCAGAGGCAGAGGGGATGATGCAGGTGGTAT CGGGGCCGACGAATTTGCCAGCACGTGCATGAGTCCAACCGCGGTTATTG GAGATCCTATCGAATCGACGATGATGGAGCTCAACTTCCTGGCGGACGCC GTGGGCCATCTGGAGGGCGTGGATGTGAACATGCTTGCTACACACGCAAC TTGCGGCTCAGGGCACAGTCTGTATGCCTTTCCCCTGGATAGAGCAGAAG GCGAACGACAACCCTCCCCATATTCGTATCACCCCGAGCACCAGCACAAG TACAAGCAGACCCAGCATCGTGCCGATAGCTATTCATTTTCCCCGCGACC CCACCATGGTCAACAAGAGCGGCAGCAGCAAAAGCATTATTTGTCTGACG CTTCCCATTACATGGCACATACGAACCAAGTTTCCTCTGTGGAAATAAAC AGCGAAAGGCAAGGCCTCGACTCCTACCACCACCAGCACCACCAGCACCA CCAGCAGCATCACCAGCAACCATATTATCAGCGCGATGCAAGCACCTCCA TTGCCAATAGCATTGAGAAGACAATCTTGCCTTCCTTCTCATCTCATCCT CATCCCCTTAAGCCTCACTGCCAACACCACCAGCACCATCTGCACGAGCG ATCCTGCACCTTGAAAGCTGATGTGAACCCCGCCCCTATCACCTCCCCGT GTTGCCTCTATCGCCACGGCAATACCACAGATAGCTTACACCCGCACATT AACAGCTCTTGCAACATCAATGCGGCAGGCTGTATCACCAATCGAGCCTC CGTGTTGTACGACGATAAGGGGGAGGAAGAGGTTGCCATCGGCAGCTGCA GTAGCACCTGCAGCACCTGCAGCGGTAGCAGCAGCATCAACGGTAGTGAG GAGGAGCTGCGCTTGCTTACGACGGAAAATTATGAAACTCATTTTGCGTC GAGCGCGGGAGCGGAAGCCTACATAGGCTCGAGTGGTGGGATTTCTTCTC CCTCTTTGACCACTTCTGAAGAGGATGATGAGGAGTTGCCGCATCATCAT TCTCTGCCCGCCACCTCGAGGATCAGGCGCAATGCTGCCATTGTAGCAGC TGCTGCTCTTGCCGCAGACTCGGGCAGCAGGAGCCGGAGGAGGTCGGTCC ATGTAGAGGGGTATAGCAGCACCAGGAGTAGCATCACCGGCGACAGCAGC AGCTCTTCCACTGCCACCTTCATTCTCCCTTTCCATCCCACCACCACCGC AAGCAGCGGAGGGATAGGGGGAGGGTACTGGCCCCCCCTCAAGACGGTCA ATCGTCATAGTCGTCGGAAATATTCGATGGACCCAGCCAGTTTTGTCATC GTTCCCACCCCCAAGATACTACTCGGGAGCTGGTTTGATAAGCGGCCAAA CCGTCTGTGTCGGACACCTGGGTGTAGGAATCGGTATAGAACTCCTGGAT ACTTGTGTGAGTCTTGTGGGGGAGGAAAGTGTCAAGTAAAGGGGTGTAGA CGCTTGCATCAGGGGAAGCAGGGGTTGTCGGATCTGTTCTTTTGTCGGGC ACATCGGAACGTGTACGCGGCGTTGATGATGAAGGATGGGGGGGGATGCG CGGTGGAGGAACAGGAACGAGAGAAAGAGCAGGAGCAGGAGCAGGAGCTG GAGCTGGAGCTGGGGCGAGAAATGACGGCATGAGTGGAGGAAGTGCATGC CGCTGCCTTTTTAAAAGGTGTACGTGTTCTGTGCACATTCGAGCCCAAGC AACCAAAGTCTCCCCCTCCACACCACCTCCTTCCCTCCTGCCCTAATACC TTGGGTGGACGCTTGGGGAGGTTTCCTTCTATGTATGTATATATGTGCTC GTGGCGTTGTGTGTGTCCATGAATGAGCAAGATAGGATTAAATCAAGCCG GGATGCTTGAAGAAATCCTCGTCTCACTCCACCTACCGGATTAAATGACT GAGTTGATCACGGGTAAATAACAAACGAATATCCTCACGAATTAAAAGAC AGCATGTGCCCTCTAATGTCTCACTCCGTTTCCACCAGTTAGAGACGGCA TATATATGAATTAGGTTAATCGCCACTTAAGGCGATGCTTACCCGCCATA AAGGTTCAGTAACCGCAACTGCGACAATAGTTTTCTACCAGATTGCATGA GTAGTAGAGAAGAAAAAACCGAATTCGAGCTAGCAGAATGATCACAATAA AGCATCTTGCGGTAGCGATGCAATAGAATATAAGGAAAACAAATCCTGAT CTTGAGTGCCTGTGTATGGTGCGGAGAAGAAGGAGGTCCTTCTATACCTT ATTGTGCGTACAGAATATCCCATCTGCAGGAAGATGGCGCGCATAAGGGG GGAAGGGGAGGGAAAGAAGGCAGAGAGAAAGAGAGAAGGAGAGAGAGAGA GAGAGAGAGAGAATTGTAGAATGCCTTATGTTTTTGAATGAGCCCTAAAA CCGTCAAGCAAATCCTTATACTTTTGAAAAATAATATGT back to topprotein sequence of jgi.p|Nanoce1779_2|596633 >mRNA_6876-protein ID=mRNA_6876-protein|Name=jgi.p|Nanoce1779_2|596633|organism=Nannochloropsis oceanica|type=polypeptide|length=676bp MVPSRLLSTPSCADNHSSPAAGATSSLYENDNAFLEASLDATDIPASPDP VKAAGHCQSPHQAEQQPPVSYGPPQQHQHQQQQDVSEQAKGVAMPDDSCD FLLHISDSPFSRLRVRGGVACTRGRGDDAGGIGADEFASTCMSPTAVIGD PIESTMMELNFLADAVGHLEGVDVNMLATHATCGSGHSLYAFPLDRAEGE RQPSPYSYHPEHQHKYKQTQHRADSYSFSPRPHHGQQERQQQKHYLSDAS HYMAHTNQVSSVEINSERQGLDSYHHQHHQHHQQHHQQPYYQRDASTSIA NSIEKTILPSFSSHPHPLKPHCQHHQHHLHERSCTLKADVNPAPITSPCC LYRHGNTTDSLHPHINSSCNINAAGCITNRASVLYDDKGEEEVAIGSCSS TCSTCSGSSSINGSEEELRLLTTENYETHFASSAGAEAYIGSSGGISSPS LTTSEEDDEELPHHHSLPATSRIRRNAAIVAAAALAADSGSRSRRRSVHV EGYSSTRSSITGDSSSSSTATFILPFHPTTTASSGGIGGGYWPPLKTVNR HSRRKYSMDPASFVIVPTPKILLGSWFDKRPNRLCRTPGCRNRYRTPGYL CESCGGGKCQVKGCRRLHQGKQGLSDLFFCRAHRNVYAALMMKDGGGCAV EEQEREKEQEQEQELELELGREMTA* back to topmRNA from alignment at scaffold_17:320935..323897- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_6876 ID=mRNA_6876|Name=jgi.p|Nanoce1779_2|596633|organism=Nannochloropsis oceanica|type=mRNA|length=2963bp|location=Sequence derived from alignment at scaffold_17:320935..323897- (Nannochloropsis oceanica) AACAGATGGTACCTTCTCGACTTCTGTCGACCCCTTCTTGTGCCGACAAC
CACTCCTCCCCCGCTGCTGGTGCCACCTCTTCCCTTTACGAGAATGACAA
TGCCTTTTTGGAAGCCTCTCTCGATGCCACTGACATCCCGGCCAGTCCGG
ACCCTGTAAAGGCTGCGGGACACTGCCAGTCCCCTCACCAAGCAGAACAG
CAGCCCCCAGTCAGTTATGGGCCACCCCAGCAGCACCAGCACCAGCAGCA
GCAAGATGTATCAGAACAAGCCAAAGGGGTGGCGATGCCTGACGATTCAT
GCGACTTCTTGCTGCATATTTCAGACTCCCCTTTCTCCCGCCTTCGGGTC
CGAGGAGGGGTCGCCTGTACCAGAGGCAGAGGGGATGATGCAGGTGGTAT
CGGGGCCGACGAATTTGCCAGCACGTGCATGAGTCCAACCGCGGTTATTG
GAGATCCTATCGAATCGACGATGATGGAGGTAAATTATGTTACTGGGTGC
ATGTATGGGTGTATTCGGTACATTCTGATCTCTACTGTCGATCCAGCAGT
CACTAACATCTTACACCTACATGAACCACAGCTCAACTTCCTGGCGGACG
CCGTGGGCCATCTGGAGGGCGTGGATGTGAACATGCTTGCTACACACGCA
ACTTGCGGCTCAGGGCACAGTCTGTATGCCTTTCCCCTGGATAGAGCAGA
AGGCGAACGACAACCCTCCCCATATTCGTATCACCCCGAGCACCAGCACA
AGTACAAGCAGACCCAGCATCGTGCCGATAGCTATTCATTTTCCCCGCGA
CCCCACCATGGTCAACAAGAGCGGCAGCAGCAAAAGCATTATTTGTCTGA
CGCTTCCCATTACATGGCACATACGAACCAAGTTTCCTCTGTGGAAATAA
ACAGCGAAAGGCAAGGCCTCGACTCCTACCACCACCAGCACCACCAGCAC
CACCAGCAGCATCACCAGCAACCATATTATCAGCGCGATGCAAGCACCTC
CATTGCCAATAGCATTGAGAAGACAATCTTGCCTTCCTTCTCATCTCATC
CTCATCCCCTTAAGCCTCACTGCCAACACCACCAGCACCATCTGCACGAG
CGATCCTGCACCTTGAAAGCTGATGTGAACCCCGCCCCTATCACCTCCCC
GTGTTGCCTCTATCGCCACGGCAATACCACAGATAGCTTACACCCGCACA
TTAACAGCTCTTGCAACATCAATGCGGCAGGCTGTATCACCAATCGAGCC
TCCGTGTTGTACGACGATAAGGGGGAGGAAGAGGTTGCCATCGGCAGCTG
CAGTAGCACCTGCAGCACCTGCAGCGGTAGCAGCAGCATCAACGGTAGTG
AGGAGGAGCTGCGCTTGCTTACGACGGAAAATTATGAAACTCATTTTGCG
TCGAGCGCGGGAGCGGAAGCCTACATAGGCTCGAGTGGTGGGATTTCTTC
TCCCTCTTTGACCACTTCTGAAGAGGATGATGAGGAGTTGCCGCATCATC
ATTCTCTGCCCGCCACCTCGAGGATCAGGCGCAATGCTGCCATTGTAGCA
GCTGCTGCTCTTGCCGCAGACTCGGGCAGCAGGAGCCGGAGGAGGTCGGT
CCATGTAGAGGGGTATAGCAGCACCAGGAGTAGCATCACCGGCGACAGCA
GCAGCTCTTCCACTGCCACCTTCATTCTCCCTTTCCATCCCACCACCACC
GCAAGCAGCGGAGGGATAGGGGGAGGGTACTGGCCCCCCCTCAAGACGGT
CAATCGTCATAGTCGTCGGAAATATTCGATGGACCCAGCCAGTTTTGTCA
TCGTTCCCACCCCCAAGATACTACTCGGGAGCTGGTTTGATAAGCGGCCA
AACCGTCTGTGTCGGACACCTGGGTGTAGGAATCGGTATAGAACTCCTGG
ATACTTGTGTGAGTCTTGTGGGGGAGGAAAGTGTCAAGTAAAGGGGTGTA
GACGCTTGCATCAGGGGAAGCAGGGGTTGTCGGATCTGTTCTTTTGTCGG
GCACATCGGAACGTGTACGCGGCGTTGATGATGAAGGATGGGGGGGGATG
CGCGGTGGAGGAACAGGAACGAGAGAAAGAGCAGGAGCAGGAGCAGGAGC
TGGAGCTGGAGCTGGGGCGAGAAATGACGGCATGAGTGGAGGAAGTGCAT
GCCGCTGCCTTTTTAAAAGGTGTACGTGTTCTGTGCACATTCGAGCCCAA
GCAACCAAAGTCTCCCCCTCCACACCACCTCCTTCCCTCCTGCCCTAATA
CCTTGGGTGGACGCTTGGGGAGGTTTCCTTCTATGTATGTATATATGTGC
TCGTGGCGTTGTGTGTGTCCATGAATGAGCAAGATAGGATTAAATCAAGC
CGGGATGCTTGAAGAAATCCTCGTCTCACTCCACCTACCGGATTAAATGA
CTGAGTTGATCACGGGTAAATAACAAACGAATATCCTCACGAATTAAAAG
ACAGCATGTGCCCTCTAATGTCTCACTCCGTTTCCACCAGTTAGAGACGG
CATATATATGAATTAGGTTAATCGCCACTTAAGGCGATGCTTACCCGCCA
TAAAGGTTCAGTAACCGCAACTGCGACAATAGTTTTCTACCAGATTGCAT
GAGTAGTAGAGAAGAAAAAACCGAATTCGAGCTAGCAGAATGATCACAAT
AAAGCATCTTGCGGTAGCGATGCAATAGAATATAAGGAAAACAAATCCTG
ATCTTGAGTGCCTGTGTATGGTGCGGAGAAGAAGGAGGTCCTTCTATACC
TTATTGTGCGTACAGAATATCCCATCTGCAGGAAGATGGCGCGCATAAGG
GGGGAAGGGGAGGGAAAGAAGGCAGAGAGAAAGAGAGAAGGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATTGTAGAATGCCT
TATGTTTTTGAATGAGCCCTAAAACCGTCAAGCAAATCCTTATACTTTTG
AAAAATAATATGT back to topCoding sequence (CDS) from alignment at scaffold_17:320935..323897- >mRNA_6876 ID=mRNA_6876|Name=jgi.p|Nanoce1779_2|596633|organism=Nannochloropsis oceanica|type=CDS|length=4056bp|location=Sequence derived from alignment at scaffold_17:320935..323897- (Nannochloropsis oceanica) CTCAACTTCCTGGCGGACGCCGTGGGCCATCTGGAGGGCGTGGATGTGAA CATGCTTGCTACACACGCAACTTGCGGCTCAGGGCACAGTCTGTATGCCT TTCCCCTGGATAGAGCAGAAGGCGAACGACAACCCTCCCCATATTCGTAT CACCCCGAGCACCAGCACAAGTACAAGCAGACCCAGCATCGTGCCGATAG CTATTCATTTTCCCCGCGACCCCACCATGGTCAACAAGAGCGGCAGCAGC AAAAGCATTATTTGTCTGACGCTTCCCATTACATGGCACATACGAACCAA GTTTCCTCTGTGGAAATAAACAGCGAAAGGCAAGGCCTCGACTCCTACCA CCACCAGCACCACCAGCACCACCAGCAGCATCACCAGCAACCATATTATC AGCGCGATGCAAGCACCTCCATTGCCAATAGCATTGAGAAGACAATCTTG CCTTCCTTCTCATCTCATCCTCATCCCCTTAAGCCTCACTGCCAACACCA CCAGCACCATCTGCACGAGCGATCCTGCACCTTGAAAGCTGATGTGAACC CCGCCCCTATCACCTCCCCGTGTTGCCTCTATCGCCACGGCAATACCACA GATAGCTTACACCCGCACATTAACAGCTCTTGCAACATCAATGCGGCAGG CTGTATCACCAATCGAGCCTCCGTGTTGTACGACGATAAGGGGGAGGAAG AGGTTGCCATCGGCAGCTGCAGTAGCACCTGCAGCACCTGCAGCGGTAGC AGCAGCATCAACGGTAGTGAGGAGGAGCTGCGCTTGCTTACGACGGAAAA TTATGAAACTCATTTTGCGTCGAGCGCGGGAGCGGAAGCCTACATAGGCT CGAGTGGTGGGATTTCTTCTCCCTCTTTGACCACTTCTGAAGAGGATGAT GAGGAGTTGCCGCATCATCATTCTCTGCCCGCCACCTCGAGGATCAGGCG CAATGCTGCCATTGTAGCAGCTGCTGCTCTTGCCGCAGACTCGGGCAGCA GGAGCCGGAGGAGGTCGGTCCATGTAGAGGGGTATAGCAGCACCAGGAGT AGCATCACCGGCGACAGCAGCAGCTCTTCCACTGCCACCTTCATTCTCCC TTTCCATCCCACCACCACCGCAAGCAGCGGAGGGATAGGGGGAGGGTACT GGCCCCCCCTCAAGACGGTCAATCGTCATAGTCGTCGGAAATATTCGATG GACCCAGCCAGTTTTGTCATCGTTCCCACCCCCAAGATACTACTCGGGAG CTGGTTTGATAAGCGGCCAAACCGTCTGTGTCGGACACCTGGGTGTAGGA ATCGGTATAGAACTCCTGGATACTTGTGTGAGTCTTGTGGGGGAGGAAAG TGTCAAGTAAAGGGGTGTAGACGCTTGCATCAGGGGAAGCAGGGGTTGTC GGATCTGTTCTTTTGTCGGGCACATCGGAACGTGTACGCGGCGTTGATGA TGAAGGATGGGGGGGGATGCGCGGTGGAGGAACAGGAACGAGAGAAAGAG CAGGAGCAGGAGCAGGAGCTGGAGCTGGAGCTGGGGCGAGAAATGACGGC ATGAATGGTACCTTCTCGACTTCTGTCGACCCCTTCTTGTGCCGACAACC ACTCCTCCCCCGCTGCTGGTGCCACCTCTTCCCTTTACGAGAATGACAAT GCCTTTTTGGAAGCCTCTCTCGATGCCACTGACATCCCGGCCAGTCCGGA CCCTGTAAAGGCTGCGGGACACTGCCAGTCCCCTCACCAAGCAGAACAGC AGCCCCCAGTCAGTTATGGGCCACCCCAGCAGCACCAGCACCAGCAGCAG CAAGATGTATCAGAACAAGCCAAAGGGGTGGCGATGCCTGACGATTCATG CGACTTCTTGCTGCATATTTCAGACTCCCCTTTCTCCCGCCTTCGGGTCC GAGGAGGGGTCGCCTGTACCAGAGGCAGAGGGGATGATGCAGGTGGTATC GGGGCCGACGAATTTGCCAGCACGTGCATGAGTCCAACCGCGGTTATTGG AGATCCTATCGAATCGACGATGATGGAGCTCAACTTCCTGGCGGACGCCG TGGGCCATCTGGAGGGCGTGGATGTGAACATGCTTGCTACACACGCAACT TGCGGCTCAGGGCACAGTCTGTATGCCTTTCCCCTGGATAGAGCAGAAGG CGAACGACAACCCTCCCCATATTCGTATCACCCCGAGCACCAGCACAAGT ACAAGCAGACCCAGCATCGTGCCGATAGCTATTCATTTTCCCCGCGACCC CACCATGGTCAACAAGAGCGGCAGCAGCAAAAGCATTATTTGTCTGACGC TTCCCATTACATGGCACATACGAACCAAGTTTCCTCTGTGGAAATAAACA GCGAAAGGCAAGGCCTCGACTCCTACCACCACCAGCACCACCAGCACCAC CAGCAGCATCACCAGCAACCATATTATCAGCGCGATGCAAGCACCTCCAT TGCCAATAGCATTGAGAAGACAATCTTGCCTTCCTTCTCATCTCATCCTC ATCCCCTTAAGCCTCACTGCCAACACCACCAGCACCATCTGCACGAGCGA TCCTGCACCTTGAAAGCTGATGTGAACCCCGCCCCTATCACCTCCCCGTG TTGCCTCTATCGCCACGGCAATACCACAGATAGCTTACACCCGCACATTA ACAGCTCTTGCAACATCAATGCGGCAGGCTGTATCACCAATCGAGCCTCC GTGTTGTACGACGATAAGGGGGAGGAAGAGGTTGCCATCGGCAGCTGCAG TAGCACCTGCAGCACCTGCAGCGGTAGCAGCAGCATCAACGGTAGTGAGG AGGAGCTGCGCTTGCTTACGACGGAAAATTATGAAACTCATTTTGCGTCG AGCGCGGGAGCGGAAGCCTACATAGGCTCGAGTGGTGGGATTTCTTCTCC CTCTTTGACCACTTCTGAAGAGGATGATGAGGAGTTGCCGCATCATCATT CTCTGCCCGCCACCTCGAGGATCAGGCGCAATGCTGCCATTGTAGCAGCT GCTGCTCTTGCCGCAGACTCGGGCAGCAGGAGCCGGAGGAGGTCGGTCCA TGTAGAGGGGTATAGCAGCACCAGGAGTAGCATCACCGGCGACAGCAGCA GCTCTTCCACTGCCACCTTCATTCTCCCTTTCCATCCCACCACCACCGCA AGCAGCGGAGGGATAGGGGGAGGGTACTGGCCCCCCCTCAAGACGGTCAA TCGTCATAGTCGTCGGAAATATTCGATGGACCCAGCCAGTTTTGTCATCG TTCCCACCCCCAAGATACTACTCGGGAGCTGGTTTGATAAGCGGCCAAAC CGTCTGTGTCGGACACCTGGGTGTAGGAATCGGTATAGAACTCCTGGATA CTTGTGTGAGTCTTGTGGGGGAGGAAAGTGTCAAGTAAAGGGGTGTAGAC GCTTGCATCAGGGGAAGCAGGGGTTGTCGGATCTGTTCTTTTGTCGGGCA CATCGGAACGTGTACGCGGCGTTGATGATGAAGGATGGGGGGGGATGCGC GGTGGAGGAACAGGAACGAGAGAAAGAGCAGGAGCAGGAGCAGGAGCTGG AGCTGGAGCTGGGGCGAGAAATGACGGCATGAATGGTACCTTCTCGACTT CTGTCGACCCCTTCTTGTGCCGACAACCACTCCTCCCCCGCTGCTGGTGC CACCTCTTCCCTTTACGAGAATGACAATGCCTTTTTGGAAGCCTCTCTCG ATGCCACTGACATCCCGGCCAGTCCGGACCCTGTAAAGGCTGCGGGACAC TGCCAGTCCCCTCACCAAGCAGAACAGCAGCCCCCAGTCAGTTATGGGCC ACCCCAGCAGCACCAGCACCAGCAGCAGCAAGATGTATCAGAACAAGCCA AAGGGGTGGCGATGCCTGACGATTCATGCGACTTCTTGCTGCATATTTCA GACTCCCCTTTCTCCCGCCTTCGGGTCCGAGGAGGGGTCGCCTGTACCAG AGGCAGAGGGGATGATGCAGGTGGTATCGGGGCCGACGAATTTGCCAGCA CGTGCATGAGTCCAACCGCGGTTATTGGAGATCCTATCGAATCGACGATG ATGGAG back to top
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