jgi.p|Nanoce1779_2|596627, mRNA_6875 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596627
Unique NamemRNA_6875
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1121
Alignment locationscaffold_17:319301..320421 +

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Properties
Property NameValue
TranscriptId596713
TrackFilteredModels2
ProteinId596627
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:319301..320421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596627gene_6875Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596627mRNA_6875-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6875CDS_6875Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6875 ID=mRNA_6875|Name=jgi.p|Nanoce1779_2|596627|organism=Nannochloropsis oceanica|type=mRNA|length=1121bp
GTCTCTTCACCCCTCCCCGCGCCCGCCTTGCCACACGCGAACCTAAAAGC
AGTTGCAATCCTTAGCGCCGCCGTGGGATCCTGGGCAGTGCTGCGAGCAC
CGGAAGTACGCACATGGTTCCAAGACGTGAGCCCGTTGCACTCGAAATAC
TTTCCCTTGTCCCGGCATCAAGTCCTCATCTTCCTTGCCTGGCTAACCAA
CAAGATCGCCGTCCGTGTCCCCGGTCGATCTGATGGCAAGAGCTGGAAAG
ACGCCATGGCTTCGCCTGTGCGTTTCTTTACTCCTTCTGGCTATGCATTT
GCGATTTGGGCCCCCATCTTCCTTGGGGAGCTCATGTTGACTTTTTACCA
ACTCGGGTCAAGCCGTCTCGCCCCTGCCCTCCACCCGTACCTCGCCAGGA
TTGCCCCTCCATTGGCGCAGGCCTTTGCGGCACAGAGCCTGTGGTGTTTG
GCGTTTCGGCCATGGGTTGGGCGGATGCAATTTGTGCCAACAGCATTGCT
GGCAATGACAGCAGTGGGCTTGTCACGCGTGCATACCATCTTGAGGGAAG
GTGTCGCGGCGGGTGCGATGCGGCCGTGGGATTATGTAATTGTGCATTTG
CCTTTGTCGCTTCACTTTGGCTGGATCACCTGCGCAACGCTCGTTAATTT
GAATGGGTGGTTTGCGGTTGCCCCCTCTCTGAGGACAGGAGACAAGCTGG
GACTTGCCCTCGCCTCGGTCAATGTCGCCGTAACATTGGGTGGACAAATC
ACTCTCGCGTCGGGCGATCCCGTTATTGCGCTGGTGGTGGCCTGGGCCCT
CTACGCAGTGGCAGATGACTTGCTACCATCCAAGTCGATCTTGAGAAAGA
ATGGTCTGGTGGGCGATGATGCACTGGATTGCCTGGAGATCTCGGCGCGG
GTCTCGGCGTTTCTGCAGGCAGGGTTGGCTGGTGCAGTGATGTTGTGGAA
GCTGCTACTTAGGGCTGGCGTGGTGGCTCCTGGAGATGCGGTTAGATTGA
TGACTGCGGCATATGAACCGGTAAAATCTCTTTTCACATGACGGAGGGAG
GGATGGAAGGAGGGAGTGGGAGAAGAAGGGAGGGGTAGATGATGGCAGTT
GTGGGGATGGGAGAGAATATA
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protein sequence of jgi.p|Nanoce1779_2|596627

>mRNA_6875-protein ID=mRNA_6875-protein|Name=jgi.p|Nanoce1779_2|596627|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MASPVRFFTPSGYAFAIWAPIFLGELMLTFYQLGSSRLAPALHPYLARIA
PPLAQAFAAQSLWCLAFRPWVGRMQFVPTALLAMTAVGLSRVHTILREGV
AAGAMRPWDYVIVHLPLSLHFGWITCATLVNLNGWFAVAPSLRTGDKLGL
ALASVNVAVTLGGQITLASGDPVIALVVAWALYAVADDLLPSKSILRKNG
LVGDDALDCLEISARVSAFLQAGLAGAVMLWKLLLRAGVVAPGDAVRLMT
AAYEPVKSLFT*
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mRNA from alignment at scaffold_17:319301..320421+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6875 ID=mRNA_6875|Name=jgi.p|Nanoce1779_2|596627|organism=Nannochloropsis oceanica|type=mRNA|length=1121bp|location=Sequence derived from alignment at scaffold_17:319301..320421+ (Nannochloropsis oceanica)
GTCTCTTCACCCCTCCCCGCGCCCGCCTTGCCACACGCGAACCTAAAAGC
AGTTGCAATCCTTAGCGCCGCCGTGGGATCCTGGGCAGTGCTGCGAGCAC
CGGAAGTACGCACATGGTTCCAAGACGTGAGCCCGTTGCACTCGAAATAC
TTTCCCTTGTCCCGGCATCAAGTCCTCATCTTCCTTGCCTGGCTAACCAA
CAAGATCGCCGTCCGTGTCCCCGGTCGATCTGATGGCAAGAGCTGGAAAG
ACGCCATGGCTTCGCCTGTGCGTTTCTTTACTCCTTCTGGCTATGCATTT
GCGATTTGGGCCCCCATCTTCCTTGGGGAGCTCATGTTGACTTTTTACCA
ACTCGGGTCAAGCCGTCTCGCCCCTGCCCTCCACCCGTACCTCGCCAGGA
TTGCCCCTCCATTGGCGCAGGCCTTTGCGGCACAGAGCCTGTGGTGTTTG
GCGTTTCGGCCATGGGTTGGGCGGATGCAATTTGTGCCAACAGCATTGCT
GGCAATGACAGCAGTGGGCTTGTCACGCGTGCATACCATCTTGAGGGAAG
GTGTCGCGGCGGGTGCGATGCGGCCGTGGGATTATGTAATTGTGCATTTG
CCTTTGTCGCTTCACTTTGGCTGGATCACCTGCGCAACGCTCGTTAATTT
GAATGGGTGGTTTGCGGTTGCCCCCTCTCTGAGGACAGGAGACAAGCTGG
GACTTGCCCTCGCCTCGGTCAATGTCGCCGTAACATTGGGTGGACAAATC
ACTCTCGCGTCGGGCGATCCCGTTATTGCGCTGGTGGTGGCCTGGGCCCT
CTACGCAGTGGCAGATGACTTGCTACCATCCAAGTCGATCTTGAGAAAGA
ATGGTCTGGTGGGCGATGATGCACTGGATTGCCTGGAGATCTCGGCGCGG
GTCTCGGCGTTTCTGCAGGCAGGGTTGGCTGGTGCAGTGATGTTGTGGAA
GCTGCTACTTAGGGCTGGCGTGGTGGCTCCTGGAGATGCGGTTAGATTGA
TGACTGCGGCATATGAACCGGTAAAATCTCTTTTCACATGACGGAGGGAG
GGATGGAAGGAGGGAGTGGGAGAAGAAGGGAGGGGTAGATGATGGCAGTT
GTGGGGATGGGAGAGAATATA
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Coding sequence (CDS) from alignment at scaffold_17:319301..320421+

>mRNA_6875 ID=mRNA_6875|Name=jgi.p|Nanoce1779_2|596627|organism=Nannochloropsis oceanica|type=CDS|length=786bp|location=Sequence derived from alignment at scaffold_17:319301..320421+ (Nannochloropsis oceanica)
ATGGCTTCGCCTGTGCGTTTCTTTACTCCTTCTGGCTATGCATTTGCGAT
TTGGGCCCCCATCTTCCTTGGGGAGCTCATGTTGACTTTTTACCAACTCG
GGTCAAGCCGTCTCGCCCCTGCCCTCCACCCGTACCTCGCCAGGATTGCC
CCTCCATTGGCGCAGGCCTTTGCGGCACAGAGCCTGTGGTGTTTGGCGTT
TCGGCCATGGGTTGGGCGGATGCAATTTGTGCCAACAGCATTGCTGGCAA
TGACAGCAGTGGGCTTGTCACGCGTGCATACCATCTTGAGGGAAGGTGTC
GCGGCGGGTGCGATGCGGCCGTGGGATTATGTAATTGTGCATTTGCCTTT
GTCGCTTCACTTTGGCTGGATCACCTGCGCAACGCTCGTTAATTTGAATG
GGTGGTTTGCGGTTGCCCCCTCTCTGAGGACAGGAGACAAGCTGGGACTT
GCCCTCGCCTCGGTCAATGTCGCCGTAACATTGGGTGGACAAATCACTCT
CGCGTCGGGCGATCCCGTTATTGCGCTGGTGGTGGCCTGGGCCCTCTACG
CAGTGGCAGATGACTTGCTACCATCCAAGTCGATCTTGAGAAAGAATGGT
CTGGTGGGCGATGATGCACTGGATTGCCTGGAGATCTCGGCGCGGGTCTC
GGCGTTTCTGCAGGCAGGGTTGGCTGGTGCAGTGATGTTGTGGAAGCTGC
TACTTAGGGCTGGCGTGGTGGCTCCTGGAGATGCGGTTAGATTGATGACT
GCGGCATATGAACCGGTAAAATCTCTTTTCACATGA
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Synonyms
Publications