jgi.p|Nanoce1779_2|596619, mRNA_6872 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|596619
Unique Name	mRNA_6872
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1906
Alignment location	scaffold_17:305856..307761 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	596705
Track	FilteredModels2
ProteinId	596619

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_17	supercontig	scaffold_17:305856..307761 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596619	gene_6872	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|596619	mRNA_6872-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_6872	CDS_6872	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_17:305856..307761+
coding sequence from alignment at scaffold_17:305856..307761+

mRNA sequence

>mRNA_6872 ID=mRNA_6872|Name=jgi.p|Nanoce1779_2|596619|organism=Nannochloropsis oceanica|type=mRNA|length=1906bp
ACAGTGACTCTCCCAAGAATGCTCTCCCGGTCGCCCCGGTGGTGCGTTAC
GACAATGATGATAACGCTTTTGCTGCGCTCCACCTCAGCTGGGATGGCCC
GCCGTGGTGCTGGAGCCGCTTTCATGGCCCCCTCAGGCGTTATTTTCCCT
CCCTTGGCGACCACAACCACGACTAGTAGCCGCACTCCATTCTCGTCTCC
CTCTGCTGCCCTGCCGGCGCGTCGTGGAGGTGCGGCGATGTGGCCTTTCT
CGAGCGCCACCCGTCTGTTTTCCACCACCAATGCCGACACAGGCATCTCC
TGGCGTACCCAAGCCCCGAGCGTCGCCAAGCTCGAGTCCCTGGCCGGCAT
GGGCGACGCTACCTTCAAAGTCGACTTACTTGTGCTCCCCGCCTTTCAGC
CCGAAGAGGATGGGGAGGATGTCCAGTTGGCTGTGGATACCCAACCCATT
CTGGCTGCTTGGGATAGTGCCTTGGGTGGCGCCATCGCCGACCTCGTCCA
AACTAAGGACTTCAAGGGCAAGGCTGGCTCGGCCGCACGTGTCCGCCTTG
GCAATAATTCCGCGGTTAAGAGCTTGACATTAGTGGGAATGGGTAAGAAG
AGTCAATTCAAAAGTGCACGTGCTATGGGACCGGCGGCCGCTACGGACAT
AAAGGCGGAGAAGCCGAAGACGGTTGCGGTGGTGCTGCCCGGAGGAGATT
GTTTGGGTGCTGTAGCGGAGGACATGCTCTCAGGTCTTTATTTGGATAAT
CGGTTCAAGACGGGGGAAGGGGTGGAAAAAGCGGCCATGGTTGAGAAGCT
GTCGTTTTACGGGGTTGAGGCGGGGAAGGATGCGGAGGGGGCCTTGAAGA
AGGCACAGGCTTTTTCGGAAGGCGTGAGGTTGACCAAGGACTTGGTTGGG
GCACCTGCGAATTACGTGACTCCTCAGGCATTGGCGGAGACGGCGCGAAG
CATCGCAGGGGAGTACGAAGGGTGGAGTGTCAAGGTGATGGGACGGAAGG
AGTGTGCTGATTTGAACATGGGAGCGTATCTTGCAGTGGCTCAAGGCTCG
ATGGACCCCCCTGAATTTATCCATTTGTCGTACAAACCTAAAGGAGAGGC
GAAGAAGAAGTTGGTATTGGTCGGGAAGGGATTGACCTTCGACAGTGGAG
GCTACAACCTGAAGGCAGGTGCTGGGTCCATGATTGAGTTGATGAAATTT
GATATGGGAGGGGCGGGGGCTGTGCTTGGAGCAGCGAAGATCCTTGCAGG
TTTGGCTCCGGAGGGAGTGGAAGTGCATGTGATTGTGGCGGCGTGTGAGA
ATATGATTAGCGCGCAGGCGTACCGGCCTGGCGATATATTGAAAGCATCG
AATGGAAAGACAATTGAGGTATTGAACACGGATGCCGAGGGAAGGTTGAC
ATTGGCAGACGCCTTGGTATACGCCGAGAAACTCGACCCGGACGCGATTG
TTGATGCGGCAACTCTCACTGGTGCGTGTATCATTGCGCTAGGAGGGGAA
TACGGTGGGATGTGGACTGGGGATGATAACTTAGCTGCTGCCCTCGAGGC
AGCAGCGACGACGAAGGGGGAGAATTTCTGGAGGATGCCGCTGGCAGAAG
AGTATAAGCCGAACATCAAGAGTGAGATTGCGGACTTGAAGAATGTGGGC
GGAAGGGAGGGGGGCTCCATCACGGCGGCGTTGTTTTTGCAGGAGTTTGT
GACGAAGAAAACGCCGTGGGCCCATTTGGATATTGCGGGGCCTGTGTGGA
ACCCGAAGAAGGGGGGGGCGACGGGGTTTGGTGCTAGAACGTTGGCGCAG
TGGGTGTTGTCGCAGGCATCATTGTAGATCGAGAGCAGGGAGGGAATGGA
GGGGAGGAGCGCGGGGAAAAAGGACAAAAATTGATGGCACATCATGCGGG
TCGAAG

protein sequence of jgi.p|Nanoce1779_2|596619

>mRNA_6872-protein ID=mRNA_6872-protein|Name=jgi.p|Nanoce1779_2|596619|organism=Nannochloropsis oceanica|type=polypeptide|length=603bp
MLSRSPRWCVTTMMITLLLRSTSAGMARRGAGAAFMAPSGVIFPPLATTT
TTSSRTPFSSPSAALPARRGGAAMWPFSSATRLFSTTNADTGISWRTQAP
SVAKLESLAGMGDATFKVDLLVLPAFQPEEDGEDVQLAVDTQPILAAWDS
ALGGAIADLVQTKDFKGKAGSAARVRLGNNSAVKSLTLVGMGKKSQFKSA
RAMGPAAATDIKAEKPKTVAVVLPGGDCLGAVAEDMLSGLYLDNRFKTGE
GVEKAAMVEKLSFYGVEAGKDAEGALKKAQAFSEGVRLTKDLVGAPANYV
TPQALAETARSIAGEYEGWSVKVMGRKECADLNMGAYLAVAQGSMDPPEF
IHLSYKPKGEAKKKLVLVGKGLTFDSGGYNLKAGAGSMIELMKFDMGGAG
AVLGAAKILAGLAPEGVEVHVIVAACENMISAQAYRPGDILKASNGKTIE
VLNTDAEGRLTLADALVYAEKLDPDAIVDAATLTGACIIALGGEYGGMWT
GDDNLAAALEAAATTKGENFWRMPLAEEYKPNIKSEIADLKNVGGREGGS
ITAALFLQEFVTKKTPWAHLDIAGPVWNPKKGGATGFGARTLAQWVLSQA
SL*

mRNA from alignment at scaffold_17:305856..307761+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6872 ID=mRNA_6872|Name=jgi.p|Nanoce1779_2|596619|organism=Nannochloropsis oceanica|type=mRNA|length=1906bp|location=Sequence derived from alignment at scaffold_17:305856..307761+ (Nannochloropsis oceanica)
ACAGTGACTCTCCCAAGAATGCTCTCCCGGTCGCCCCGGTGGTGCGTTAC
GACAATGATGATAACGCTTTTGCTGCGCTCCACCTCAGCTGGGATGGCCC
GCCGTGGTGCTGGAGCCGCTTTCATGGCCCCCTCAGGCGTTATTTTCCCT
CCCTTGGCGACCACAACCACGACTAGTAGCCGCACTCCATTCTCGTCTCC
CTCTGCTGCCCTGCCGGCGCGTCGTGGAGGTGCGGCGATGTGGCCTTTCT
CGAGCGCCACCCGTCTGTTTTCCACCACCAATGCCGACACAGGCATCTCC
TGGCGTACCCAAGCCCCGAGCGTCGCCAAGCTCGAGTCCCTGGCCGGCAT
GGGCGACGCTACCTTCAAAGTCGACTTACTTGTGCTCCCCGCCTTTCAGC
CCGAAGAGGATGGGGAGGATGTCCAGTTGGCTGTGGATACCCAACCCATT
CTGGCTGCTTGGGATAGTGCCTTGGGTGGCGCCATCGCCGACCTCGTCCA
AACTAAGGACTTCAAGGGCAAGGCTGGCTCGGCCGCACGTGTCCGCCTTG
GCAATAATTCCGCGGTTAAGAGCTTGACATTAGTGGGAATGGGTAAGAAG
AGTCAATTCAAAAGTGCACGTGCTATGGGACCGGCGGCCGCTACGGACAT
AAAGGCGGAGAAGCCGAAGACGGTTGCGGTGGTGCTGCCCGGAGGAGATT
GTTTGGGTGCTGTAGCGGAGGACATGCTCTCAGGTCTTTATTTGGATAAT
CGGTTCAAGACGGGGGAAGGGGTGGAAAAAGCGGCCATGGTTGAGAAGCT
GTCGTTTTACGGGGTTGAGGCGGGGAAGGATGCGGAGGGGGCCTTGAAGA
AGGCACAGGCTTTTTCGGAAGGCGTGAGGTTGACCAAGGACTTGGTTGGG
GCACCTGCGAATTACGTGACTCCTCAGGCATTGGCGGAGACGGCGCGAAG
CATCGCAGGGGAGTACGAAGGGTGGAGTGTCAAGGTGATGGGACGGAAGG
AGTGTGCTGATTTGAACATGGGAGCGTATCTTGCAGTGGCTCAAGGCTCG
ATGGACCCCCCTGAATTTATCCATTTGTCGTACAAACCTAAAGGAGAGGC
GAAGAAGAAGTTGGTATTGGTCGGGAAGGGATTGACCTTCGACAGTGGAG
GCTACAACCTGAAGGCAGGTGCTGGGTCCATGATTGAGTTGATGAAATTT
GATATGGGAGGGGCGGGGGCTGTGCTTGGAGCAGCGAAGATCCTTGCAGG
TTTGGCTCCGGAGGGAGTGGAAGTGCATGTGATTGTGGCGGCGTGTGAGA
ATATGATTAGCGCGCAGGCGTACCGGCCTGGCGATATATTGAAAGCATCG
AATGGAAAGACAATTGAGGTATTGAACACGGATGCCGAGGGAAGGTTGAC
ATTGGCAGACGCCTTGGTATACGCCGAGAAACTCGACCCGGACGCGATTG
TTGATGCGGCAACTCTCACTGGTGCGTGTATCATTGCGCTAGGAGGGGAA
TACGGTGGGATGTGGACTGGGGATGATAACTTAGCTGCTGCCCTCGAGGC
AGCAGCGACGACGAAGGGGGAGAATTTCTGGAGGATGCCGCTGGCAGAAG
AGTATAAGCCGAACATCAAGAGTGAGATTGCGGACTTGAAGAATGTGGGC
GGAAGGGAGGGGGGCTCCATCACGGCGGCGTTGTTTTTGCAGGAGTTTGT
GACGAAGAAAACGCCGTGGGCCCATTTGGATATTGCGGGGCCTGTGTGGA
ACCCGAAGAAGGGGGGGGCGACGGGGTTTGGTGCTAGAACGTTGGCGCAG
TGGGTGTTGTCGCAGGCATCATTGTAGATCGAGAGCAGGGAGGGAATGGA
GGGGAGGAGCGCGGGGAAAAAGGACAAAAATTGATGGCACATCATGCGGG
TCGAAG

Coding sequence (CDS) from alignment at scaffold_17:305856..307761+

>mRNA_6872 ID=mRNA_6872|Name=jgi.p|Nanoce1779_2|596619|organism=Nannochloropsis oceanica|type=CDS|length=1809bp|location=Sequence derived from alignment at scaffold_17:305856..307761+ (Nannochloropsis oceanica)
ATGCTCTCCCGGTCGCCCCGGTGGTGCGTTACGACAATGATGATAACGCT
TTTGCTGCGCTCCACCTCAGCTGGGATGGCCCGCCGTGGTGCTGGAGCCG
CTTTCATGGCCCCCTCAGGCGTTATTTTCCCTCCCTTGGCGACCACAACC
ACGACTAGTAGCCGCACTCCATTCTCGTCTCCCTCTGCTGCCCTGCCGGC
GCGTCGTGGAGGTGCGGCGATGTGGCCTTTCTCGAGCGCCACCCGTCTGT
TTTCCACCACCAATGCCGACACAGGCATCTCCTGGCGTACCCAAGCCCCG
AGCGTCGCCAAGCTCGAGTCCCTGGCCGGCATGGGCGACGCTACCTTCAA
AGTCGACTTACTTGTGCTCCCCGCCTTTCAGCCCGAAGAGGATGGGGAGG
ATGTCCAGTTGGCTGTGGATACCCAACCCATTCTGGCTGCTTGGGATAGT
GCCTTGGGTGGCGCCATCGCCGACCTCGTCCAAACTAAGGACTTCAAGGG
CAAGGCTGGCTCGGCCGCACGTGTCCGCCTTGGCAATAATTCCGCGGTTA
AGAGCTTGACATTAGTGGGAATGGGTAAGAAGAGTCAATTCAAAAGTGCA
CGTGCTATGGGACCGGCGGCCGCTACGGACATAAAGGCGGAGAAGCCGAA
GACGGTTGCGGTGGTGCTGCCCGGAGGAGATTGTTTGGGTGCTGTAGCGG
AGGACATGCTCTCAGGTCTTTATTTGGATAATCGGTTCAAGACGGGGGAA
GGGGTGGAAAAAGCGGCCATGGTTGAGAAGCTGTCGTTTTACGGGGTTGA
GGCGGGGAAGGATGCGGAGGGGGCCTTGAAGAAGGCACAGGCTTTTTCGG
AAGGCGTGAGGTTGACCAAGGACTTGGTTGGGGCACCTGCGAATTACGTG
ACTCCTCAGGCATTGGCGGAGACGGCGCGAAGCATCGCAGGGGAGTACGA
AGGGTGGAGTGTCAAGGTGATGGGACGGAAGGAGTGTGCTGATTTGAACA
TGGGAGCGTATCTTGCAGTGGCTCAAGGCTCGATGGACCCCCCTGAATTT
ATCCATTTGTCGTACAAACCTAAAGGAGAGGCGAAGAAGAAGTTGGTATT
GGTCGGGAAGGGATTGACCTTCGACAGTGGAGGCTACAACCTGAAGGCAG
GTGCTGGGTCCATGATTGAGTTGATGAAATTTGATATGGGAGGGGCGGGG
GCTGTGCTTGGAGCAGCGAAGATCCTTGCAGGTTTGGCTCCGGAGGGAGT
GGAAGTGCATGTGATTGTGGCGGCGTGTGAGAATATGATTAGCGCGCAGG
CGTACCGGCCTGGCGATATATTGAAAGCATCGAATGGAAAGACAATTGAG
GTATTGAACACGGATGCCGAGGGAAGGTTGACATTGGCAGACGCCTTGGT
ATACGCCGAGAAACTCGACCCGGACGCGATTGTTGATGCGGCAACTCTCA
CTGGTGCGTGTATCATTGCGCTAGGAGGGGAATACGGTGGGATGTGGACT
GGGGATGATAACTTAGCTGCTGCCCTCGAGGCAGCAGCGACGACGAAGGG
GGAGAATTTCTGGAGGATGCCGCTGGCAGAAGAGTATAAGCCGAACATCA
AGAGTGAGATTGCGGACTTGAAGAATGTGGGCGGAAGGGAGGGGGGCTCC
ATCACGGCGGCGTTGTTTTTGCAGGAGTTTGTGACGAAGAAAACGCCGTG
GGCCCATTTGGATATTGCGGGGCCTGTGTGGAACCCGAAGAAGGGGGGGG
CGACGGGGTTTGGTGCTAGAACGTTGGCGCAGTGGGTGTTGTCGCAGGCA
TCATTGTAG

Synonyms

Publications