jgi.p|Nanoce1779_2|139665, mRNA_687 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|139665
Unique NamemRNA_687
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1446
Alignment locationscaffold_2:195267..197097 +

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Properties
Property NameValue
TranscriptId139751
TrackFilteredModels2
ProteinId139665
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_2supercontigscaffold_2:195267..197097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|139665gene_687Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|139665mRNA_687-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_687CDS_687Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_687 ID=mRNA_687|Name=jgi.p|Nanoce1779_2|139665|organism=Nannochloropsis oceanica|type=mRNA|length=1446bp
GTCTGAATCGTCACGAGGAGGGGATGGTCCGTCAGAAGCGACATCGGCCG
TTGACTTTCCTTCCAGTATAGAGTTCCCGGGTGACGAGGAAGAGAAGGAA
GAGGGGGAGGAGGAGGGCGGGGGGGGAGGGAGGGAACCAGGGACAGCAGA
GCGTGCCACAGCAGCTGTCGCCGGACGATTCCGGGTGTTCTGGAAAGGAG
ACATGTCCTGCTGCCGGTGCTGCTGCTCTCGAGCAGGAAGGTAAACGAAG
CTCAAGACGTGAAGGAAAAGGAGCTGGAGGAGGAGGAGGTAGGGTGGGTG
ATGAGAAGGAGGGAGGGAGGGAGGGAGAGGAGCAGGAAGAGCCTATGGCA
TTGGAGGATGAGGCGGGAATGCTCCTGGTTATTGGTGAAGAGGGGAGGAA
GGATGAAGAGATACAACGACAGCAGCAGCGGCAGCAGGAGAAAGAGGAGG
AGAAGGAGAAGGGGGAGAAGAATGGGAAGGAAGAGGATTCCATCTCTGTT
GATTCTCTTACCCTCGGCGCGATCGTCCGTCCCCTCCTCCCTCCCTCCGC
CCAAAACACACCGCCCACACTAAGGGATGACGTGGGCCACGAAGAGGAGG
AGGAAGAGGAGGCGAAGGAGGAGGAGGGAGGAATGGAGGAGCTGGTGTCG
GTATCACGTACTCGTGCCTCCCGAGGCAATGGAGGGCGCTTGTGGAACGC
TGCTGCACATCCCAGTCAGGACACTTATCGTCCTACCCCACGTGCTCCTC
CTGCTCCTCCGCCTCCTGCATGTTCTACGTCTCCTGGCGAGGGGGAAGAG
ACGCCGGACTCCCCTTCCTTGCTGCCGGAGAAAATGAAACAGAGTGAGGG
CATGGAGGGGGGCGATAAGGAAAAAGGCAGAAGGGGAAAGAGGACGGGCA
TGAAAATGGGGCCTGGAGGGAAGGAGGAAGGAGGGAGGAATAACCAGAAA
GACATGTGTCCGTCCTCATCCGCTCTCTCGCTCGTAGCAGCCCACAGGGC
GACGGAAACAGATAGGGAAAAGGCGTGCAAAGACGGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGTTGAGAGGAAGGGGGAGGAGGAAGCGGAAGAGG
ACGAGCGACCTTTTTCCACTGGAGGAGGACGAAAGTGTACGTCCCCTTCG
GCCATCACTTTCTCCCCTACTGGTGGTGTTGAAGCTGCCGCTGCAGACAC
TGCTGCTGCTGAAGGTGAGGAGACAGCCCTGTCGGCAGCGGCAGTGCAAG
CGCTGTTACTCGATGAACGGTTACGTGCCCGGGAGCAAGAATTGGACGCT
AGGGAGAGAGCATTGAACGAACGGGAGAGGAGATTAGATGGTCGGCAGGT
GGCCTTGGAGAGAATCAACAGGGTATTGATGACCGGAGGCCGGGCTATTT
CGGCCGAGCCTTTGTTTATGTCTCCTGTTGGGAAGGTAGGGGGGGG
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protein sequence of jgi.p|Nanoce1779_2|139665

>mRNA_687-protein ID=mRNA_687-protein|Name=jgi.p|Nanoce1779_2|139665|organism=Nannochloropsis oceanica|type=polypeptide|length=324bp
MALEDEAGMLLVIGEEGRKDEEIQRQQQRQQEKEEEKEKGEKNGKEEDSI
SVDSLTLGAIVRPLLPPSAQNTPPTLRDDVGHEEEEEEEAKEEEGGMEEL
VSVSRTRASRGNGGRLWNAAAHPSQDTYRPTPRAPPAPPPPACSTSPGEG
EETPDSPSLLPEKMKQSEGMEGGDKEKGRRGKRTGMKMGPGGKEEGGRNN
QKDMCPSSSALSLVAAHRATETDREKACKDGRRRRRRRRRRLRGRGRRKR
KRTSDLFPLEEDESVRPLRPSLSPLLVVLKLPLQTLLLLKVRRQPCRQRQ
CKRCYSMNGYVPGSKNWTLGREH*
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mRNA from alignment at scaffold_2:195267..197097+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_687 ID=mRNA_687|Name=jgi.p|Nanoce1779_2|139665|organism=Nannochloropsis oceanica|type=mRNA|length=1831bp|location=Sequence derived from alignment at scaffold_2:195267..197097+ (Nannochloropsis oceanica)
GTCTGAATCGTCACGAGGAGGGGATGGTCCGTCAGAAGCGACATCGGCCG
TTGACTTTCCTTCCAGTATAGAGTTCCCGGGTGACGAGGAAGAGAAGGAA
GAGGGGGAGGAGGAGGGCGGGGGGGGAGGGAGGGAACCAGGGACAGCAGA
GCGTGCCACAGCAGCTGTCGCCGGACGATTCCGGGTGTTCTGGAAAGGAG
ACATGTCCTGCTGCCGGTGCTGCTGCTCTCGAGCAGGAAGGTAAACGAAG
CTCAAGACGTGAAGGAAAAGGAGCTGGAGGAGGAGGAGGTAGGGTGGGTG
ATGAGAAGGAGGGAGGGAGGGAGGGAGAGGAGCAGGAAGAGCCTATGGCA
TTGGAGGATGAGGCGGGAATGCTCCTGGTTATTGGTGAAGAGGGGAGGAA
GGATGAAGAGATACAACGACAGCAGCAGCGGCAGCAGGAGAAAGAGGAGG
AGAAGGAGAAGGGGGAGAAGAATGGGAAGGAAGAGGATTCCATCTCTGTT
GATTCTCTTACCCTCGGCGCGATCGTCCGTCCCCTCCTCCCTCCCTCCGC
CCAAAACACACCGCCCACACTAAGGGATGACGTGGGCCACGAAGAGGAGG
AGGAAGAGGAGGCGAAGGAGGAGGAGGGAGGAATGGAGGAGCTGGTGTCG
GTATCACGTACTCGTGCCTCCCGAGGCAATGGAGGGCGCTTGTGGAACGC
TGCTGCACATCCCAGTCAGGACACTTATCGTCCTACCCCACGTGCTCCTC
CTGCTCCTCCGCCTCCTGCATGTTCTACGTCTCCTGGCGAGGGGGAAGAG
ACGCCGGACTCCCCTTCCTTGCTGCCGGAGAAAATGAAACAGAGTGAGGG
CATGGAGGGGGGCGATAAGGAAAAAGGCAGAAGGGGAAAGAGGACGGGCA
TGAAAATGGGGCCTGGAGGGAAGGAGGAAGGAGGGAGGAATAACCAGAAA
GACATGTGTCCGTCCTCATCCGCTCTCTCGCTCGTAGCAGCCCACAGGGC
GACGGAAACAGATAGGGAAAAGGCGTGCAAAGACGGGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAGAGGGA
AAAGAGCGGGGTAGGAAGGGCGGGCGGGTGGTACCACGACGGGTGGCGCC
GCTTGCGGATGAAGGATGGCTTACCACCAAGGGGGCCGTACTCAAGAGAC
GCGTTTTTCCTGCTGCCGAAGCAGCGGCGGCAGCAGCGGGGACGGGGAAG
GGGGGAGGAGAAAGCGAGCATCTGCAAGGAAAGGAGCAGCAGCGACAAGC
AGCGGTAGCAGTTCTGTATCGACGTCGTCAGAAAAGGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGTTGAGAGGAAGGGGGAGGAGGAAGCGGAAGAGGACGAGCGACCTTTTT
CCACTGGAGGAGGACGAAAGTGTACGTCCCCTTCGGCCATCACTTTCTCC
CCTACTGGTGGTGTTGAAGCTGCCGCTGCAGACACTGCTGCTGCTGAAGG
TGAGGAGACAGCCCTGTCGGCAGCGGCAGTGCAAGCGCTGTTACTCGATG
AACGGTTACGTGCCCGGGAGCAAGAATTGGACGCTAGGGAGAGAGCATTG
AACGAACGGGAGAGGAGATTAGATGGTCGGCAGGTGGCCTTGGAGAGAAT
CAACAGGGTATTGATGACCGGAGGCCGGGCTATTTCGGCCGAGCCTTTGT
TTATGTCTCCTGTTGGGAAGGTAGGGGGGGG
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Coding sequence (CDS) from alignment at scaffold_2:195267..197097+

>mRNA_687 ID=mRNA_687|Name=jgi.p|Nanoce1779_2|139665|organism=Nannochloropsis oceanica|type=CDS|length=1944bp|location=Sequence derived from alignment at scaffold_2:195267..197097+ (Nannochloropsis oceanica)
ATGGCATTGGAGGATGAGGCGGGAATGCTCCTGGTTATTGGTGAAGAGGG
GAGGAAGGATGAAGAGATACAACGACAGCAGCAGCGGCAGCAGGAGAAAG
AGGAGGAGAAGGAGAAGGGGGAGAAGAATGGGAAGGAAGAGGATTCCATC
TCTGTTGATTCTCTTACCCTCGGCGCGATCGTCCGTCCCCTCCTCCCTCC
CTCCGCCCAAAACACACCGCCCACACTAAGGGATGACGTGGGCCACGAAG
AGGAGGAGGAAGAGGAGGCGAAGGAGGAGGAGGGAGGAATGGAGGAGCTG
GTGTCGGTATCACGTACTCGTGCCTCCCGAGGCAATGGAGGGCGCTTGTG
GAACGCTGCTGCACATCCCAGTCAGGACACTTATCGTCCTACCCCACGTG
CTCCTCCTGCTCCTCCGCCTCCTGCATGTTCTACGTCTCCTGGCGAGGGG
GAAGAGACGCCGGACTCCCCTTCCTTGCTGCCGGAGAAAATGAAACAGAG
TGAGGGCATGGAGGGGGGCGATAAGGAAAAAGGCAGAAGGGGAAAGAGGA
CGGGCATGAAAATGGGGCCTGGAGGGAAGGAGGAAGGAGGGAGGAATAAC
CAGAAAGACATGTGTCCGTCCTCATCCGCTCTCTCGCTCGTAGCAGCCCA
CAGGGCGACGGAAACAGATAGGGAAAAGGCGTGCAAAGACGGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGTTGAGAGGAAGGGGGAGGAGGAAGCGG
AAGAGGACGAGCGACCTTTTTCCACTGGAGGAGGACGAAAGTGTACGTCC
CCTTCGGCCATCACTTTCTCCCCTACTGGTGGTGTTGAAGCTGCCGCTGC
AGACACTGCTGCTGCTGAAGGTGAGGAGACAGCCCTGTCGGCAGCGGCAG
TGCAAGCGCTGTTACTCGATGAACGGTTACGTGCCCGGGAGCAAGAATTG
GACGCTAGGGAGAGAGCATTGAATGGCATTGGAGGATGAGGCGGGAATGC
TCCTGGTTATTGGTGAAGAGGGGAGGAAGGATGAAGAGATACAACGACAG
CAGCAGCGGCAGCAGGAGAAAGAGGAGGAGAAGGAGAAGGGGGAGAAGAA
TGGGAAGGAAGAGGATTCCATCTCTGTTGATTCTCTTACCCTCGGCGCGA
TCGTCCGTCCCCTCCTCCCTCCCTCCGCCCAAAACACACCGCCCACACTA
AGGGATGACGTGGGCCACGAAGAGGAGGAGGAAGAGGAGGCGAAGGAGGA
GGAGGGAGGAATGGAGGAGCTGGTGTCGGTATCACGTACTCGTGCCTCCC
GAGGCAATGGAGGGCGCTTGTGGAACGCTGCTGCACATCCCAGTCAGGAC
ACTTATCGTCCTACCCCACGTGCTCCTCCTGCTCCTCCGCCTCCTGCATG
TTCTACGTCTCCTGGCGAGGGGGAAGAGACGCCGGACTCCCCTTCCTTGC
TGCCGGAGAAAATGAAACAGAGTGAGGGCATGGAGGGGGGCGATAAGGAA
AAAGGCAGAAGGGGAAAGAGGACGGGCATGAAAATGGGGCCTGGAGGGAA
GGAGGAAGGAGGGAGGAATAACCAGAAAGACATGTGTCCGTCCTCATCCG
CTCTCTCGCTCGTAGCAGCCCACAGGGCGACGGAAACAGATAGGGAAAAG
GCGTGCAAAGACGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTTGAG
AGGAAGGGGGAGGAGGAAGCGGAAGAGGACGAGCGACCTTTTTCCACTGG
AGGAGGACGAAAGTGTACGTCCCCTTCGGCCATCACTTTCTCCCCTACTG
GTGGTGTTGAAGCTGCCGCTGCAGACACTGCTGCTGCTGAAGGTGAGGAG
ACAGCCCTGTCGGCAGCGGCAGTGCAAGCGCTGTTACTCGATGAACGGTT
ACGTGCCCGGGAGCAAGAATTGGACGCTAGGGAGAGAGCATTGA
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Synonyms
Publications