jgi.p|Nanoce1779_2|596602, mRNA_6868 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596602
Unique NamemRNA_6868
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length368
Alignment locationscaffold_17:298033..298910 -

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Properties
Property NameValue
TranscriptId596688
TrackFilteredModels2
ProteinId596602
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:298033..298910 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596602gene_6868Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596602mRNA_6868-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6868CDS_6868Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6868 ID=mRNA_6868|Name=jgi.p|Nanoce1779_2|596602|organism=Nannochloropsis oceanica|type=mRNA|length=368bp
AGCAACCCGCACCATGGGAAAGAAGTCTGACGTGGTGCTGCCGGCCCGGG
AGCACACTGCACGGGAGGAACGGAAGGACGTCGTCGCCTGGGTCAAGGGA
CGCGAGGCACGTGCGCGGGAAGAGGCCATAGCCATCGAGATGGTGAAGAA
CTTGCGTGAGAAGGTCTCATGGTGCCAACGGGAGCACCCCGTGACTCACT
ACTATGACTGCGCCGACATTGTCGGCCAGTACCTTAAGCTGGTGAAGGAC
CCGTTGCGTGGCGTGCAGGTACCAGACGCGGCAGCCGAGGAGTAGGGATA
AAGGCGGCAGTATTGATTAAAGGGGATATTTCCTGATGGAGCTTGTGTGC
GTGCGAAGGGAATGCCGT
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protein sequence of jgi.p|Nanoce1779_2|596602

>mRNA_6868-protein ID=mRNA_6868-protein|Name=jgi.p|Nanoce1779_2|596602|organism=Nannochloropsis oceanica|type=polypeptide|length=94bp
MGKKSDVVLPAREHTAREERKDVVAWVKGREARAREEAIAIEMVKNLREK
VSWCQREHPVTHYYDCADIVGQYLKLVKDPLRGVQVPDAAAEE*
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mRNA from alignment at scaffold_17:298033..298910-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6868 ID=mRNA_6868|Name=jgi.p|Nanoce1779_2|596602|organism=Nannochloropsis oceanica|type=mRNA|length=878bp|location=Sequence derived from alignment at scaffold_17:298033..298910- (Nannochloropsis oceanica)
AGCAACCCGCACCATGGGAAAGAAGTCTGACGTGGTGCTGCCGGCCCGGG
AGCACACTGCACGGGAGGAACGGAAGGACGTCGTCGCCTGGGTCAAGGGA
CGCGAGGCACGGTACGTTGATGAGGTATTGCATGTATGGCGAGAGGAGGA
GCAAGGAGACGCCTTGGACGTGTGCGTGATTGCCATTTCACGCTGCACCA
ATAGTCTGTTAGTACGTTGCGCCATGAGTCTGTTTTTGTCGTGCGTCTCA
TGTAGCTGGTATAGCGAGCCCTTTGATTCTGCGTAGGTAGTACGAAAACG
TTAGCTTCACCTCTCTCTGGGCGTCGTGCCGCCGCCATCCCACATGTTCC
CATAAATCAACATACGTTCACACCTATAAAAACAAAGTGCGCGGGAAGAG
GCCATAGCCATCGAGATGGTGAAGAACTTGCGTGAGAAGGTCTCATGGTG
CCAACGGGAGCACCCCGTGACTCACTACTATGACTGCGCCGACATTGTCG
GCCAGTACCTTAAGCTGGTGAAGGTGAGAAGGATGGAGGGAAGGAGAGCG
AAAAGGAGGAAAGGAGAAAATAAAAGATTGATGCATGCGGTCCGGTTGAA
AGCGATGCGTCTTTTAAGTCATTCCCATGTCCGGGATGCTGGACAAGGCT
ACGCGAGGCTTGAGAGGCTCATTTTCCCCTTCCCTCCAACACCCATACAC
CCCCTTTCTCTTTGATTTTACACCACTAAAACACACACTCTCTCTACGCT
CTTTCAGGACCCGTTGCGTGGCGTGCAGGTACCAGACGCGGCAGCCGAGG
AGTAGGGATAAAGGCGGCAGTATTGATTAAAGGGGATATTTCCTGATGGA
GCTTGTGTGCGTGCGAAGGGAATGCCGT
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Coding sequence (CDS) from alignment at scaffold_17:298033..298910-

>mRNA_6868 ID=mRNA_6868|Name=jgi.p|Nanoce1779_2|596602|organism=Nannochloropsis oceanica|type=CDS|length=846bp|location=Sequence derived from alignment at scaffold_17:298033..298910- (Nannochloropsis oceanica)
GACCCGTTGCGTGGCGTGCAGGTACCAGACGCGGCAGCCGAGGAGTAGTG
CGCGGGAAGAGGCCATAGCCATCGAGATGGTGAAGAACTTGCGTGAGAAG
GTCTCATGGTGCCAACGGGAGCACCCCGTGACTCACTACTATGACTGCGC
CGACATTGTCGGCCAGTACCTTAAGCTGGTGAAGATGGGAAAGAAGTCTG
ACGTGGTGCTGCCGGCCCGGGAGCACACTGCACGGGAGGAACGGAAGGAC
GTCGTCGCCTGGGTCAAGGGACGCGAGGCACGGACCCGTTGCGTGGCGTG
CAGGTACCAGACGCGGCAGCCGAGGAGTAGTGCGCGGGAAGAGGCCATAG
CCATCGAGATGGTGAAGAACTTGCGTGAGAAGGTCTCATGGTGCCAACGG
GAGCACCCCGTGACTCACTACTATGACTGCGCCGACATTGTCGGCCAGTA
CCTTAAGCTGGTGAAGATGGGAAAGAAGTCTGACGTGGTGCTGCCGGCCC
GGGAGCACACTGCACGGGAGGAACGGAAGGACGTCGTCGCCTGGGTCAAG
GGACGCGAGGCACGGACCCGTTGCGTGGCGTGCAGGTACCAGACGCGGCA
GCCGAGGAGTAGTGCGCGGGAAGAGGCCATAGCCATCGAGATGGTGAAGA
ACTTGCGTGAGAAGGTCTCATGGTGCCAACGGGAGCACCCCGTGACTCAC
TACTATGACTGCGCCGACATTGTCGGCCAGTACCTTAAGCTGGTGAAGAT
GGGAAAGAAGTCTGACGTGGTGCTGCCGGCCCGGGAGCACACTGCACGGG
AGGAACGGAAGGACGTCGTCGCCTGGGTCAAGGGACGCGAGGCACG
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Synonyms
Publications