jgi.p|Nanoce1779_2|596597, mRNA_6866 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|596597
Unique NamemRNA_6866
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1001
Alignment locationscaffold_17:294654..295654 -

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Properties
Property NameValue
TranscriptId596683
TrackFilteredModels2
ProteinId596597
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:294654..295654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596597gene_6866Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|596597mRNA_6866-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_6866CDS_6866Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_6866 ID=mRNA_6866|Name=jgi.p|Nanoce1779_2|596597|organism=Nannochloropsis oceanica|type=mRNA|length=1001bp
ACAGACCCTGCTCCGTGGTCCTCCTTTGGCTGCCCTGGTGGATGACCCTC
TCGTGGTCTCGCAGCGCCCGCCGAGCTCTTTGCATCTCTGTGTTAGCCTC
CAACAGCACGGCCAGCCTCGCCTTCGCCTACATCACGCCTAGTGCCAACT
CACGCACTCGCGGACTTTCCAGCATGACACACAAAGCTTCGCGAAACGAC
AATTATGGCGGCGCTGGCGTGACACTGAACCCCATTGCCGGACCAGCCCA
ATCCTCAATTGTGTGGATGCACGGACTAGGGGACAGCGGGGAAGGATGGT
CAGGCGCCTTTAATCCTGCCCTATTTCCTTCGACCCGTTTGATTTTTCCC
ACGGCCCCCACCCGCCCCATTTCTTTGAATGGAGGCTTTCCGATGCCAGG
TTGGTTTGATATCAATGGTTTGGATGAGAGCAGCCCCGAGGATAAGGTGG
GGTTTGAAGAAGCAAAGAAGAGAATCGAAGGCATCGTTGCGGGTGAAATG
GCAGCAGGCGTGCCGGCAGAGAGAATCATTCTGGGTGGTTTCTCGCAAGG
GGGAGCCGTGACACTGCATGTGGCATTGCGTAGTAAGGTGAAGTTGGGAG
GAGCTGTGGTTTTATCGGGGTGGTTGCCCCTCAAGGCGGATTACCCCGCA
GCATTGACAGAGACAGGGAAGAGCATGGCCTATTTCCATGGGCATGGAGA
TGCGGATGGTGTGGTGAGGTACCAGTGGGGGCAGCATAGTGCGGAGAAAA
TGAAGGAGCTTGGGTTGGATTACACATTTAAGACATACAGGGGCCTGGAT
CATGGGGCAACTCCGGAAGAGATGCGAGACGCGACTACCTTTATGAAGGC
AATTCTTGAAAAGTAAGATCAAAGACATTAAGGCGGAAGAAAGAGTGAAG
AACTGATATCATGGGAATAGGTTGGGGGTATGCTCTGGGCGAGATGGCCT
TTGAGACGTAATGACATAATAGAAGGAAAGAAAGACGCTTGAGTACGACG
G
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protein sequence of jgi.p|Nanoce1779_2|596597

>mRNA_6866-protein ID=mRNA_6866-protein|Name=jgi.p|Nanoce1779_2|596597|organism=Nannochloropsis oceanica|type=polypeptide|length=275bp
MTLSWSRSARRALCISVLASNSTASLAFAYITPSANSRTRGLSSMTHKAS
RNDNYGGAGVTLNPIAGPAQSSIVWMHGLGDSGEGWSGAFNPALFPSTRL
IFPTAPTRPISLNGGFPMPGWFDINGLDESSPEDKVGFEEAKKRIEGIVA
GEMAAGVPAERIILGGFSQGGAVTLHVALRSKVKLGGAVVLSGWLPLKAD
YPAALTETGKSMAYFHGHGDADGVVRYQWGQHSAEKMKELGLDYTFKTYR
GLDHGATPEEMRDATTFMKAILEK*
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mRNA from alignment at scaffold_17:294654..295654-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6866 ID=mRNA_6866|Name=jgi.p|Nanoce1779_2|596597|organism=Nannochloropsis oceanica|type=mRNA|length=1001bp|location=Sequence derived from alignment at scaffold_17:294654..295654- (Nannochloropsis oceanica)
ACAGACCCTGCTCCGTGGTCCTCCTTTGGCTGCCCTGGTGGATGACCCTC
TCGTGGTCTCGCAGCGCCCGCCGAGCTCTTTGCATCTCTGTGTTAGCCTC
CAACAGCACGGCCAGCCTCGCCTTCGCCTACATCACGCCTAGTGCCAACT
CACGCACTCGCGGACTTTCCAGCATGACACACAAAGCTTCGCGAAACGAC
AATTATGGCGGCGCTGGCGTGACACTGAACCCCATTGCCGGACCAGCCCA
ATCCTCAATTGTGTGGATGCACGGACTAGGGGACAGCGGGGAAGGATGGT
CAGGCGCCTTTAATCCTGCCCTATTTCCTTCGACCCGTTTGATTTTTCCC
ACGGCCCCCACCCGCCCCATTTCTTTGAATGGAGGCTTTCCGATGCCAGG
TTGGTTTGATATCAATGGTTTGGATGAGAGCAGCCCCGAGGATAAGGTGG
GGTTTGAAGAAGCAAAGAAGAGAATCGAAGGCATCGTTGCGGGTGAAATG
GCAGCAGGCGTGCCGGCAGAGAGAATCATTCTGGGTGGTTTCTCGCAAGG
GGGAGCCGTGACACTGCATGTGGCATTGCGTAGTAAGGTGAAGTTGGGAG
GAGCTGTGGTTTTATCGGGGTGGTTGCCCCTCAAGGCGGATTACCCCGCA
GCATTGACAGAGACAGGGAAGAGCATGGCCTATTTCCATGGGCATGGAGA
TGCGGATGGTGTGGTGAGGTACCAGTGGGGGCAGCATAGTGCGGAGAAAA
TGAAGGAGCTTGGGTTGGATTACACATTTAAGACATACAGGGGCCTGGAT
CATGGGGCAACTCCGGAAGAGATGCGAGACGCGACTACCTTTATGAAGGC
AATTCTTGAAAAGTAAGATCAAAGACATTAAGGCGGAAGAAAGAGTGAAG
AACTGATATCATGGGAATAGGTTGGGGGTATGCTCTGGGCGAGATGGCCT
TTGAGACGTAATGACATAATAGAAGGAAAGAAAGACGCTTGAGTACGACG
G
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Coding sequence (CDS) from alignment at scaffold_17:294654..295654-

>mRNA_6866 ID=mRNA_6866|Name=jgi.p|Nanoce1779_2|596597|organism=Nannochloropsis oceanica|type=CDS|length=825bp|location=Sequence derived from alignment at scaffold_17:294654..295654- (Nannochloropsis oceanica)
ATGACCCTCTCGTGGTCTCGCAGCGCCCGCCGAGCTCTTTGCATCTCTGT
GTTAGCCTCCAACAGCACGGCCAGCCTCGCCTTCGCCTACATCACGCCTA
GTGCCAACTCACGCACTCGCGGACTTTCCAGCATGACACACAAAGCTTCG
CGAAACGACAATTATGGCGGCGCTGGCGTGACACTGAACCCCATTGCCGG
ACCAGCCCAATCCTCAATTGTGTGGATGCACGGACTAGGGGACAGCGGGG
AAGGATGGTCAGGCGCCTTTAATCCTGCCCTATTTCCTTCGACCCGTTTG
ATTTTTCCCACGGCCCCCACCCGCCCCATTTCTTTGAATGGAGGCTTTCC
GATGCCAGGTTGGTTTGATATCAATGGTTTGGATGAGAGCAGCCCCGAGG
ATAAGGTGGGGTTTGAAGAAGCAAAGAAGAGAATCGAAGGCATCGTTGCG
GGTGAAATGGCAGCAGGCGTGCCGGCAGAGAGAATCATTCTGGGTGGTTT
CTCGCAAGGGGGAGCCGTGACACTGCATGTGGCATTGCGTAGTAAGGTGA
AGTTGGGAGGAGCTGTGGTTTTATCGGGGTGGTTGCCCCTCAAGGCGGAT
TACCCCGCAGCATTGACAGAGACAGGGAAGAGCATGGCCTATTTCCATGG
GCATGGAGATGCGGATGGTGTGGTGAGGTACCAGTGGGGGCAGCATAGTG
CGGAGAAAATGAAGGAGCTTGGGTTGGATTACACATTTAAGACATACAGG
GGCCTGGATCATGGGGCAACTCCGGAAGAGATGCGAGACGCGACTACCTT
TATGAAGGCAATTCTTGAAAAGTAA
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Synonyms
Publications